rna9682, rna9682 (mRNA) Nannochloropsis gaditana

Overview
Namerna9682
Unique Namerna9682
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length786
Alignment locationKK037255.1:145145..146212 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100271g5.8579.mrna
Orig protein idgnl|cribi|Naga_100271g5.8579
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:145145..146212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100271g5gene9402Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9682rna9682-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21021.1cds9651Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9682 ID=rna9682|Name=rna9682|organism=Nannochloropsis gaditana|type=mRNA|length=786bp
ATGGGCGATACAAGAGGTTTTATGTTCTGTCTTTCCATCCAACGCGGCCT
TTTGGCAGCATTTTCACTCTCAGGACGCATGGCCATCTACGAGGGGGAGC
AACCGAATGCATACATGCAATCCACGGGGCGTTCTGGCTCTAATCCCTGG
CAGCTTTTCCTCTACTTTATTTTTCCAATTCCTCTGGTCTTCCTGGTGCT
GATCTCGCTACCTTTCCCCGCCCGGTATCGAGCCAAGATCCGTGTGGGCA
TCCTGAATGCCCTCAACAGGATCTCTTTTTTACGCTTTGACTACGGGGGC
GCAAGCATTTCCTTGATCGCCATCATCATTTTGATTGCACTGCTGGGCCT
GATCTTCTCCGCAAACGACTCCTTGAACGCGCGGAGGGCGGAGAATCAAG
CGCATTTCTTCGCCGAGAAAAAGGAACTTCGGTGCAAGCGCTGGCGGGCA
GAGCGGAATTTTTGGCTGTCGGTGCTCGGCTGTGTGCTTTGGGTGGTGCT
TTTGCGGATTCAGACGTTGTTGATGGACGTGGGTCCTCTGGAAGAGCGGT
TGAAAAGGGCGGAGGAGGAGAGGGACGCGGCGGCGAAGGAGAGCAAGGAG
AAGGAGGGGGTCCTGAGGCGTTTGCGGGAGGCAGTGGAGCAGGGCGTGCG
AGAGGGGAAGGAGAAGGAAGGGGTGATTCTGACTCTACGGGAGAAGATGG
GAGAGGTGGAGGGTCTGAAGAAACGTGTGGTGATCTTGGAGGAGGAGAAG
GAGGCGCTGAGAAAGGGATCGAAGAAGACGAGCTGA
back to top

protein sequence of rna9682

>rna9682-protein ID=rna9682-protein|Name=rna9682|organism=Nannochloropsis gaditana|type=polypeptide|length=144bp
MYTVQIPHPQDLEGGVHGLDDFLRAEIEHVVHATLILILLGRVPTHFGVD
VVSLPWHASKGPAQEAFTLSVPRGCVDQINACFKSTKDNLDSFVFVLDRC
KDAAQRGSTQRQGRHLHVCATQRIVRHSPKSVQVLVETLDISTG
back to top

mRNA from alignment at KK037255.1:145145..146212+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9682 ID=rna9682|Name=rna9682|organism=Nannochloropsis gaditana|type=mRNA|length=1068bp|location=Sequence derived from alignment at KK037255.1:145145..146212+ (Nannochloropsis gaditana)
TCTAGCAGGGTGCAGTGCGCGTAGGTAAGGCAAGTGTCCAGGGACACCGG
GGCTTCTCGGACCAGGCGAGTCagaacagggagggggtaTCCAGCCACCC
CTATGTAACGcaccaggccctcctccttcagcttTGCAAGGGCGGGCAAG
GTCTCCTCCAGGACGATCCTCAAGTCCGGGGAGAACTCCGGGTCGTGCAC
ATGTACACAGTCCAGATACCGCACCCCCAGGATCTCGAGGGAGGCGTGCA
CGGACTCGACGACTTTCTCCGCGCGGAAATCGAACATGTTGTACATGcca
ccctcatcctcattcTCTTGGGGCGGGTACCTACCCACTTTGGTGTTGAT
GTAGTAAGCCTGCCGTGGCACGCGTCGAAGGGCCCCGCCCAGGAGGCGTT
CACTCTTTCTGTACCAAGGGGCTGTGTCGATCAGATTAATGCCTGCTTTA
AGAGCACGAAGGACAACCTCGACagcttcgtcttcgtcctcgaccGCTGC
AAAGATGCCGCCCAGCGAGGAAGCACCCAGAGACAGGGAAGACACCTTCA
TGTCTGTGCGACCCAAAGAATTGTAAGACATTCGCCGAAGAGCGTCCAGG
TCCTGGTGGAAACCTTGGACATAAGTACCGGGTAGGGTCGAAAGATGGGG
TTCAGTGGAGACAGAGCCCACTGAGGAGGGTGATGGCATGTTGCGGTTTG
TCGTTATGAGGTCACCAGAGGAcagcaaagaggaggcgaagaatACGGGT
GGGATGTCAACCTACGAATTTTGACAACGTCatagagaaagaaaaagcac
tGAGCTGTAATTATGCTGCCATCCGATCCAATCTTTAGACgctggaaaaa
aaagcaTGAGAGGTATTGGCACATGAAGAGACgagagcctggagggaggc
ataTAACCTCCCAAAGGTGCCACCAAGGGACAACATGCCAAAGCTGGCAG
TAAGTGGGACATCAGGGAGCAAAATTTTAAGTCCTTTGCGAAAAGCATAT
TCTGTGCGAGTGTACATGTGGCCACGTTCAGACGCAAGTGACAGGATGGG
CCGTGAAGTTGCCTTAGC
back to top

Coding sequence (CDS) from alignment at KK037255.1:145145..146212+

>rna9682 ID=rna9682|Name=rna9682|organism=Nannochloropsis gaditana|type=CDS|length=435bp|location=Sequence derived from alignment at KK037255.1:145145..146212+ (Nannochloropsis gaditana)
ATGTACACAGTCCAGATACCGCACCCCCAGGATCTCGAGGGAGGCGTGCA
CGGACTCGACGACTTTCTCCGCGCGGAAATCGAACATGTTGTACATGcca
ccctcatcctcattcTCTTGGGGCGGGTACCTACCCACTTTGGTGTTGAT
GTAGTAAGCCTGCCGTGGCACGCGTCGAAGGGCCCCGCCCAGGAGGCGTT
CACTCTTTCTGTACCAAGGGGCTGTGTCGATCAGATTAATGCCTGCTTTA
AGAGCACGAAGGACAACCTCGACagcttcgtcttcgtcctcgaccGCTGC
AAAGATGCCGCCCAGCGAGGAAGCACCCAGAGACAGGGAAGACACCTTCA
TGTCTGTGCGACCCAAAGAATTGTAAGACATTCGCCGAAGAGCGTCCAGG
TCCTGGTGGAAACCTTGGACATAAGTACCGGGTAG
back to top
Synonyms
Publications