rna968, rna968 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna968
Unique Name	rna968
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3164
Alignment location	CM002456.1:857467..859362 +

Link to JBrowse

Properties


Property Name	Value
Product	polynucleotide adenylyltransferase region
Orig transcript id	gnl\|cribi\|Naga_100124g16.8324.mrna
Orig protein id	gnl\|cribi\|Naga_100124g16.8324
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:857467..859362 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100124g16	gene931	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna968	rna968-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29703.1	cds968	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:857467..859362+
coding sequence from alignment at CM002456.1:857467..859362+

mRNA sequence

>rna968 ID=rna968|Name=rna968|organism=Nannochloropsis gaditana|type=mRNA|length=3164bp
GGACACTCTCTTAGCCGCCTTCTGTCCGAGAATCCTTCCGCTGTTTGAAG
AATATTGAGCCCCTGCAAATACATAGTGGGATCATACATGAGCTTATCGC
CACACTTTCGTTGGCCTCACCGATCACTAATGCTTTCGGCAACAAGAGAT
CTTTGAGCAGTCGTCGAGGCTCTCAATTGCTTACAGAAGCGGTCGCTGTT
GTATCGCCCTTAAAAAGAGGACATGGAAATGTTCCGTCATGTCTCATCTT
GGAAGAACTCATCTTAGCGCCTTTGCGTCACCACGACACCGCCGTCCATC
GCAATACAGTCCGCAAACGGTGAAAGTTGAGTTGGTCGCTGGACGGCCTA
GACACGACCGCTCTACACGCAGGAGTGAGAGATGGTGAGACTGGGCGTCA
GACTGGTTCCGCCCCCCGGGAAGCAGACCGCTAAACTCCTATTTGGATTT
CTGGCAGCCGGAGGAGCCATCGCAGCTGTCGTTGTTATACTTCATCGTCA
ACGTGAGAAGAGGTTTTTGAGAGAAGGCCCTCGGCGCGCTCCAAAAAAGC
CGCATAAGGTGCTCTTTGGCAAAGTGGAAGGGGAGAATCGAGGCCCTCGG
ATGGAGGCACTCATGGATCCACCTATTGAGCTAGAGGATCCACTCTTCTG
GCTCCGCGACGACAGTCGCAACAACCCGGAGGTGCTGAACCTGATCAAGG
AAGAAAATAGGTTTACGGAGGCTAGGACGCGGCATAGCAAGCCGTTTCAG
CAGAAGATATATGCGGATCTTTTGCGGCATATGAAGCAGACGGATGTTCA
GGTGCCCTATTTATGGGGAGAACATTACTACTACTCCCGCACCGTGGAGG
GCAAGAGCTACGGGTACGTATGTCGGCGCTGCGGCTCCATGGATGCGCCT
GAAGAAATAGTGTTGGACTTGAACGCTCTGGCAAAGGGACAGAAGTACCT
GGACGTTGGAGAGTGGTCGCCCGCTCCCCCTGCGCACGCGTTGCTCGCCT
ACTCTGTGGACACGACTGGCTACGAGACGTATGAAATCCGCTTCAAATCT
TTGTCGGAGGGCATTAGGAAAGGACGGGAGATGAGGAAGCTCACTGCCAA
TGTCGCGTGCAATGACCTGATACCGGGAACAAGCGGGAGCTTTGTGTGGG
GCAACGATAGCTCCACTATATATTATGAAAAACTCGATGCCAGCCATCGC
CCTTATCAGCTTTGGCGGCACGCCATGGGCACCCCAACCTCGGAGGATGT
GTTGCTCTTTACTGAGGACGACGAGAGGCTGTGGATGGGTCTCGACAAGA
CGGACTCTGGTCGCTTCTTGGTCTTGTCGCTCTCCGGGAAGCAGCAGAAC
GAGACCTGGGTGCTAGATCTCGAGAACGCCGAGGGGCCGATCGAGCATTC
TGCCCGGCAGTTGAGACTTGTTGAAAAGCGCGCAGAGAACATTCGGTACT
CTGTCGAGCATCACGGGGAACACTTGTACATTATCACCAACAACTTCAAG
GGGAGGGAGTGCCTGAACTCGATGCTAGTGCGAGCACCTGTAATTACCCC
GAGCTCCGCGCATTGGGAGGAGGTCTTCGCCTATGATCCAGCCGAACAGC
TCAAACACCTGACCTGCTTTCGAGACGCGATCGTGATTCATGGTCGAGCT
CAAGGGTACGCGCAATTCTGGATCTACCATCCCCCGATCACGCCCTGTCG
CAGCCGCAGCGGCAAGAATTTGGACGAGGGAACAGCGACACTGAAGAAAG
AGACCCATCGCAAAGTCCCGGTAACGCATCCCGAGAGTGTGTATTGCGTG
CATTCGGGTCAAAACCGAACCTACGACTCTAGTTGCTTCCGTTATGAGTA
TTCCAGCCTCGTGACTCCTCGTCAGACCATCGACTATAACTTGCTCACTG
GTGCCAAGACCATCTTGAAGCAAGTTGAGGTTCCATACTATGACGCCTCC
CGTTTTGGCTGTGAACGCCTTGAGGCGCCCTCAGCTGCTCCCGATCGCCG
CGGAATTCCGCTCTCAATTGTTTACAAGAAGAGTGTCCTGCCCGAAGGAG
TCTCCAAGCCTGCGGCGCCTCTGCCGGTGTTCCTGACCGCATACGGATCT
TACGGTGCGTGCAACGATCCCTCTTTTGACAGCAATCGACTGGCCTTGCT
CGAGCGAGGCGTCGTCTACGTGATTGCGCACATACGGGGTGGAGGGGAGA
TGGGCCGGCCCTGGTATGAGAAAGAGGGAAAATTCTTGGCCAAAAAGAAC
ACTTTTCTCGACTTCGTGGGTTCGGCGGAACACCTTGTCTCGCAGGGTCT
GACGGCTCCTGACCGTTTGGCCATCTCTGGTGGCTCAGCTGGTGGACTGC
TCATCACGGCGTGCCTCAATATGCGGGGTGCTCAGCTTTTCAAGGCAGCT
ATATGCGACGTTCCATTTTGCGATGTGCTCTGCACGATGTCTGATGCAAC
CATTCCGCTCACAGTTGTGGAATGGGAGGAATGGGGTAACCCAAACGAGT
CAGCATTTCACGACTACATTCATAGTTATTGCCCTATTACCAACATTCGG
CCTCAGCAGTACCCGGCCATCCTCGTCTTGGGGGGCTTGCACGACCCTCG
CGTTGCTTATTGGGAGCCTCTGAAGTATGTGAAAAAACTCAGGGAGAATC
TTACTGCGGACAGCGGACAGCTTTTGCTGAAAATCGACATGTCCTCGGGG
CACTTTAGTGCAAGTGATCGATACAAATATTTACGGGAGAAAGCGTTTAA
TTACGCCTTTGTTTTGGAACAACTTCTCATTTTCGAATAAGTTCTTCGTA
CGGCGTCAATTAGAACATGGACAAAAAGGCGGAAAAATGATTAATTGACA
AATAGGCACAGGAAATGTGATAGACAGAGTACACTTAAAAGCAAAGAAAT
CGTCGCTGACTTGAGTCATCTGCGTGTGTGCGGCAGAAATGCACGCGGTG
AATCTTGTAGATGAGAGACAATTTACGTTTTTTTTCTTAATGAGCCGACG
CTAGATGAACAGACTTTAAAAGAAGGGTATGGCACCTTTTCCCAGATTTG
TCGAACAAAATCCAGTTTAGCGTATCAAGTAATGAAGTAACCCTTGCACA
TACATTAATTTGATTACCTTCTCAACATCCACCTCGCACTCGAAGGCCTC
CCATCCCCATGATG

protein sequence of rna968

>rna968-protein ID=rna968-protein|Name=rna968|organism=Nannochloropsis gaditana|type=polypeptide|length=631bp
MNDRLPKHTRSALILLAILCTVKGSPHLALQPCGALQASLAFSRPSARDA
STSSLPSPCAHRTRQRRYGEQPAFPVWMQSSDSLEISEAAQQHKVARIRK
FSPGPLVPAADGESATPQAINVVLTHAIADFDSLAAAVGLAKYWSHQNPE
TEAYVCMPQGAHPSVEAFLALHSVLFPLRALGTIDPSHVHKLGVVDASTK
DRLGAGQGLLASAREVHVFDHHAMKVPDIEATALNLEDVGSVTTMVVERL
READVNITDAEATLLAIGIHADTGSMTYDCTTVRDVEALAWVMRHGARQP
VIAEFCHQRLTQHQQHFLSESFVRLNTTLYEGVNIGTVVVDCQEYVGGLA
RVAQHVLELTSCDVLVWGGLYVQGSGRKQTRRLVLIGRARSGVNFVNFDE
IFKPLGGGGHMKAAAANIKFGEDPAFAQGAEEAVMKDVVESLKRQVASRQ
DFKLAKDIMSSPVLTVYRDTTMAQVAQLLRKYNIHAVPVVGANEARAPQR
PEEAAIVRGVVTDVEVLKAFKAGKMESPVSGWLLKKIGAVDVDTPVDQVK
RVMAENDGRDVLVMDRQGKLVGLISRTDILQSYQFYSVGSFAPKEAFCGK
ELATAVLQAGEVVKVEHCTTCSAHTDCRDFR

mRNA from alignment at CM002456.1:857467..859362+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna968 ID=rna968|Name=rna968|organism=Nannochloropsis gaditana|type=mRNA|length=1896bp|location=Sequence derived from alignment at CM002456.1:857467..859362+ (Nannochloropsis gaditana)
ATGAACGACCGCCTACCAAAACACACACGGTCGGCCTTGATACTCTTGGC
TATTTTGTGTACTGTGAAGGGATCCCCACACCTTGCTTTACAGCCATGTG
GCGCCCTACAAGCTTCCCTTGCgttttcccgcccctctgcTCGAGacgcc
tcgacctcctccctgccaaGCCCCTGTGCGCACAGGACACGCCAAAGAAG
ATATGGAGAACAACCTGCCTTCCCTGTGTGGATGCAGTCATCAGACAGCT
TGGAGATATCTGAAGCAGCCCAGCAGCATAAAGTGGCAAGAATAAGAAAA
TTTTCACCAGGACCACTCGTGCCAGCCGCCGATGGAGAAAGCGCCACACC
ACAGGCAATTAATGTAGTCTTGACGCATGCCATCGCCGACTTCGACTCTC
TTGCCGCGGCAGTTGGACTTGCAAAATACTGGAGCCACCAAAATCCAGAA
ACCGAGGCCTACGTGTGCATGCCGCAGGGGGCGCATCCGTCCGTGGAGGC
CTTCCTGGCCTTGCACAGCGTGCTCTTCCCGCTCCGGGCCCTGGGCACCA
TCGACCCGAGCCACGTCCACAAGCTCGGCGTAGTGGATGCGTCCACCAAA
GATAGGCTGGGagcgggccagggcctgtTGGCGTCGGCGCGAGAGGTGCA
TGTGTTCGACCACCATGCGATGAAGGTCCCGGACATCGAGGCTACTGCCC
TCAACCTGGAGGACGTCGGGTCCGTGACAACCATGGTCGTTGAGCGTCTC
CGAGAGGCTGACGTAAATATCACAGACGCGGAAGCCACCCTCCTGGCCAT
CGGCATCCACGCGGACACCGGGTCGATGACCTACGACTGCACGACGGTGA
GGGACGTCGAGGCGCTGGCGTGGGTGATGCGGCACGGGGCCAGACAGCCA
GTCATAGCGGAGTTCTGCCACCAGCGATTGACGCAACACCAGCAGCACTT
CCTCTCCGAGTCGTTCGTGCGGCTGAACACGACGCTCTACGAGGGCGTGA
ACATCGGGACCGTGGTTGTGGACTGCCAGGAGTACGTGGGCGGGCTCGCC
CGTGTGGCGCAGCATGTGCTTGAGCTCACGTCCTGCGACGTGCTTGTTTG
GGGAGGCCTTTATGTGCAGGGTTCTGGTCGAAAGCAAACGCGACGTCTGG
TGTTGATCGGGCGGGCCCGCAGCGGCGTAAACTTTGTCAACTTCGACGAG
ATTTTTAAGCCcctcggtggaggcggacacaTGAAGGCTGCGGCAGCAAA
TATAAAGTTTGGGGAAGACCCTGCTTTTGCACAGGGTGCGGAGGAAGCTG
TTATGAAGGACGTAGTCGAGAGCTTAAAGCGACAGGTTGCTAGCCGGCAA
GATTTTAAATTGGCGAAGGACATCATGAGCTCGCCAGTCTTGACAGTCTA
CCGCGACACGACCATGGCTCAGGTCGCACAGCTCCTACGCAAGTATAACA
TACATGCGGTGCCTGTGGTAGGCGCAAACGAGGCTAGAGCGCCTCAAAGG
CCCGAAGAGGCAGCAATTGTGCGGGGAGTGGTCACGGACGTAGAGGTGCT
GAAAGCATTCAAAGCTGGAAAAATGGAGTCTCCAGTGTCTGGATGGCTGC
TGAAAAAAATTGGGGCGGTAGACGTCGATACCCCAGTGGATCAGGTGAAG
CGCGTGATGGCTGAGAACGACGGAAGAGACGTGTTGGTCATGGACCGCCA
AGGGAAGCTTGTGGGACTCATATCGCGCACCGATATCCTGCAGAGTTACC
AGTTTTATTCCGTCGGATCGTTTGCACCTAAGGAAGCATTTTGCGGGAAA
GAACTTGCGACAGCCGTACTGCAGGCAGGAGAAGTAGTAAAAGTTGAACA
TTGCACCACATGCTCAGCCCACACGGACTGTCGTGATTTTAGATAA

Coding sequence (CDS) from alignment at CM002456.1:857467..859362+

>rna968 ID=rna968|Name=rna968|organism=Nannochloropsis gaditana|type=CDS|length=1896bp|location=Sequence derived from alignment at CM002456.1:857467..859362+ (Nannochloropsis gaditana)
ATGAACGACCGCCTACCAAAACACACACGGTCGGCCTTGATACTCTTGGC
TATTTTGTGTACTGTGAAGGGATCCCCACACCTTGCTTTACAGCCATGTG
GCGCCCTACAAGCTTCCCTTGCgttttcccgcccctctgcTCGAGacgcc
tcgacctcctccctgccaaGCCCCTGTGCGCACAGGACACGCCAAAGAAG
ATATGGAGAACAACCTGCCTTCCCTGTGTGGATGCAGTCATCAGACAGCT
TGGAGATATCTGAAGCAGCCCAGCAGCATAAAGTGGCAAGAATAAGAAAA
TTTTCACCAGGACCACTCGTGCCAGCCGCCGATGGAGAAAGCGCCACACC
ACAGGCAATTAATGTAGTCTTGACGCATGCCATCGCCGACTTCGACTCTC
TTGCCGCGGCAGTTGGACTTGCAAAATACTGGAGCCACCAAAATCCAGAA
ACCGAGGCCTACGTGTGCATGCCGCAGGGGGCGCATCCGTCCGTGGAGGC
CTTCCTGGCCTTGCACAGCGTGCTCTTCCCGCTCCGGGCCCTGGGCACCA
TCGACCCGAGCCACGTCCACAAGCTCGGCGTAGTGGATGCGTCCACCAAA
GATAGGCTGGGagcgggccagggcctgtTGGCGTCGGCGCGAGAGGTGCA
TGTGTTCGACCACCATGCGATGAAGGTCCCGGACATCGAGGCTACTGCCC
TCAACCTGGAGGACGTCGGGTCCGTGACAACCATGGTCGTTGAGCGTCTC
CGAGAGGCTGACGTAAATATCACAGACGCGGAAGCCACCCTCCTGGCCAT
CGGCATCCACGCGGACACCGGGTCGATGACCTACGACTGCACGACGGTGA
GGGACGTCGAGGCGCTGGCGTGGGTGATGCGGCACGGGGCCAGACAGCCA
GTCATAGCGGAGTTCTGCCACCAGCGATTGACGCAACACCAGCAGCACTT
CCTCTCCGAGTCGTTCGTGCGGCTGAACACGACGCTCTACGAGGGCGTGA
ACATCGGGACCGTGGTTGTGGACTGCCAGGAGTACGTGGGCGGGCTCGCC
CGTGTGGCGCAGCATGTGCTTGAGCTCACGTCCTGCGACGTGCTTGTTTG
GGGAGGCCTTTATGTGCAGGGTTCTGGTCGAAAGCAAACGCGACGTCTGG
TGTTGATCGGGCGGGCCCGCAGCGGCGTAAACTTTGTCAACTTCGACGAG
ATTTTTAAGCCcctcggtggaggcggacacaTGAAGGCTGCGGCAGCAAA
TATAAAGTTTGGGGAAGACCCTGCTTTTGCACAGGGTGCGGAGGAAGCTG
TTATGAAGGACGTAGTCGAGAGCTTAAAGCGACAGGTTGCTAGCCGGCAA
GATTTTAAATTGGCGAAGGACATCATGAGCTCGCCAGTCTTGACAGTCTA
CCGCGACACGACCATGGCTCAGGTCGCACAGCTCCTACGCAAGTATAACA
TACATGCGGTGCCTGTGGTAGGCGCAAACGAGGCTAGAGCGCCTCAAAGG
CCCGAAGAGGCAGCAATTGTGCGGGGAGTGGTCACGGACGTAGAGGTGCT
GAAAGCATTCAAAGCTGGAAAAATGGAGTCTCCAGTGTCTGGATGGCTGC
TGAAAAAAATTGGGGCGGTAGACGTCGATACCCCAGTGGATCAGGTGAAG
CGCGTGATGGCTGAGAACGACGGAAGAGACGTGTTGGTCATGGACCGCCA
AGGGAAGCTTGTGGGACTCATATCGCGCACCGATATCCTGCAGAGTTACC
AGTTTTATTCCGTCGGATCGTTTGCACCTAAGGAAGCATTTTGCGGGAAA
GAACTTGCGACAGCCGTACTGCAGGCAGGAGAAGTAGTAAAAGTTGAACA
TTGCACCACATGCTCAGCCCACACGGACTGTCGTGATTTTAGATAA

Synonyms

Publications