rna9670, rna9670 (mRNA) Nannochloropsis gaditana

Overview
Namerna9670
Unique Namerna9670
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2760
Alignment locationKK037255.1:110215..111197 +

Link to JBrowse

Properties
Property NameValue
Productankyrin unc44
Orig transcript idgnl|cribi|Naga_100422g4.3148.mrna
Orig protein idgnl|cribi|Naga_100422g4.3148
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:110215..111197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100422g4gene9390Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9670rna9670-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21034.1cds9639Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9670 ID=rna9670|Name=rna9670|organism=Nannochloropsis gaditana|type=mRNA|length=2760bp
ATGGTGATCCCTGCGGTGTCCCCGGCGGATTTGGAGGCGGTGGAGGCGGC
GCGTCGGAAGAAGGAGAAGGAGAAGTTGAAGAAGGGAGGCAAGTATGGGG
AGGAAGAGCGGGGGGGGGCGATAGGGAAAGGGGGGAGGGGCGGGGGGAGG
AAGGGGGGAAGGTTCGAGGGCGACGTGGAGGACGTGGACGCTGTTTTGGG
GGGGGGAGGGAGCAAGTACCGGAAGAAGGGGGGAAGGAAGGGCGGCAGGG
GGGGATACGAAGAGCCCGTGGCCCAAGGGCCCAAGGTGGTGGTGCTGGAT
GAACCTACCTTAACCATCGCCGCCCTGAGCGAGCGGATGGACGTGCGGGC
GGGCGAAATCATCAAGTACCTTATGGTAAACATGGGGGTGATGGCGACGA
TCACCCAGAGCATCGACGCGGAGACGGGGGTGCGGGTGGCGGAGGCCTTT
GGCCGGCAGGTCCGGCGGGGGCGGGAGGAGGACGAGGGGGAGGGGGAGGA
CGGGGAGGAGGAACTGAGCGTGCTCACGGAGGGGTACGGTTGGGAGGAGG
AGGACGCCGCGAGCCTCCTCCCACGCGCCCCCGTGGTGACGATTATGGGC
CACGTCGACCACGGGAAGACGAGTTTGCTGGACGCTGTGCGGGAGTCGAG
CGTTGCCACGGGGGAGGCGGGCGGGATCACGCAGCACATTGGGGCCTACC
AGGTCACCCACGCTCACCGCACCATCACCTTCATCGACACCCCCGGCCAT
GCCGCTTTCTCGGAAATGCGGGCCCGGGGCGCGAACGTGACGGACCTGGT
CGTCCTGGTGGTGGCGGCGGACGAAGGCGTGAAAGAGCAGACCATCGACT
CCATCCGCTGCGCCAAGCAGGCCCACGTGCCCATCCTCCTGGCCGTGAAC
AAGGTGGACAAGCCGGGGGCGGACCCATCCCGGGTGACGCAGGAGCTGAT
GAAGTACGACGTGCTCTTGGAAGAGTACGGGGGCGACGTCCTTTCCGCCG
AGGTCTCGGCCAAGAAGCGCTTGAACCTGGACGGTCTTCTCGAGAAGATC
CTCTTGCAGGCGGAAATTCTGGATTTGAAGGCAAACCCGAACCGGTCCGC
GGTCGGGGCGGTGGTGGAGTCCCGGATGGAGAAAGGCTTGGGCCCGGTTA
CCACGGTCCTGGTGCAGAAAGGCACCTTGCGCGTCGGGGATTGCATCGTG
GCCGGGGCTGCCTACGGAAAAGTCCGAAGCCTCACGGACGAACGGGGGAA
ACGGCTGGAAACGGCGGGGCCCTCGGTGCCGGCCGTGCTGAGCGGGTGGG
ATGGAGTCCCTGCCGCGGGCGATACTTTGATCGTGGTGGAAAGCGAAATG
CAAGCCCGGAATGTGGCGGAGGCCCGCCGGCGCTTGGAACGGGAGCGATC
GGGGAGTGCGACCATGGGGAGCATGCAGGCCCAAGTCCTGTCGATATTCG
GTACGGACGGGGTGAAAAAACGCCAGGAGGTGACGGTGGTGATCAAAGCC
GACGTCCAAGGCTCCGCGGAAGCCATCGCCACGGCCGTGAGTGCCATCCA
CGTGGAGGACGACCGGGCGGAAGTTGGGGTTAAGGTGTTGTCATCGGGCG
TAGGGGATGTCACCCAGAACGACGTGGCGTTGGCAGGCGTCAGCCAAGCC
ACGATTTTGGCCTTCAATGTGGCGGCGGACATGAACGCACAGGAGGAAGC
CCGGAAGACGGGGGTGGAGATCGAGTACCACACGGTGATCTACGACATCT
TGGACAAGTTGGAGGCGAAGGTGCAAGAGATCTTGTCCCCGACGCCGGAG
GGTGAGTACGTGGGCGCGGCCCGGGTGAAAATGGTGTTTGAAATCGGGAA
AGTCGGGAAGGTGGCGGGCTGCGAGGTCACGGACGGGACGATCAAGCGGG
GGGGCACGGTCCGGGTCTTGCGGGGGAGCGAGATCGTCTACAAGGGCCCT
CTGCGCACCCTCCGGAACGTCAAGAGCGATGTGCAGGAGATGAGCGCGGG
TCAGGAGTGCGGGATGAGCTTCAAGGACTACGAGGACTTCCGGCCCGACG
ACATTGTCGAGTGCTACGTGGTGGACAAGAAGAAGTAGGGCGGGAGGGAG
GGCGGGGGGGAGGGCGAGGGGGAGGGCGGGGCGAGGGGCCGATGCCCCGG
ATCTTAAACCAGAAGAGCGCTACTTGTGAAGGGATGGAGAGAAGGCGGTA
GTGGGTGGGAGGATGGAGAGGGGCCAAAGGGGGCCCAGAGGGAAGGAAGG
AGAGGAAGGGCGTCGGGGGGAGGACGGGCGACGGTCGAATCTCTCGACGT
GGAGGAGGGAGGGGGGAAGGGAGGGAGAAAGGGAGGTAAGGACGGTGGCA
GGGTGGACGAAGGCCTCTTTCTTGTTGAAGGGAGGGTGGAGAGGGGACAG
GACTACTTGCACGGCTTATCCCTCTTGGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGAAGGGCGTGCGAAGGTGTTGTTGGTTGGGAGGGGTGCGGATGG
AGAGGGGATGGGTGTCAAAAATGTGGTCGAGGGGAAGGAAAGCTCCATTT
GAGAGGAGTTCCTGGGCCGGGAAGGTGATGGATGTGGAAGGGCATACGAC
GGGGATTTTCGGCGGGATTAGCTGAGTAAGGGGAAAGAAGGAGCGAGGAG
CGTAATGGTAAAGTCTTGACAAGGGAGGAAGTGGCTAAAAAGAGATTGAA
AGAAGGTTTTTGCATCATGGCAGGCGATCGGAGCCGACGTGGTTGTTGAG
ATTTTATTTC
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protein sequence of rna9670

>rna9670-protein ID=rna9670-protein|Name=rna9670|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MMSSLLAISSRALALALAPSFLLLLTGPSNLLPPDHARVIFSASIARIGG
NQSALATLVSQALLHYPDAVHAPPDFDVWPWVPPLLHASAGGNVELTEVL
LQAGADPLRGSRRHRDPPSQDKDGDRVGRGGEGETPFYVACQGGYEGVVR
RLGDVQAVREQEGRVTNTGLMAASEGGHVGVVRYLLACLYAPHLPSSRSR
LPPLDIDAQDARGASALHLACRRDRAEVVSLLLAAGASLEARVGGRAGRR
EGGREGGREGGRKVGREGGRE
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mRNA from alignment at KK037255.1:110215..111197+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9670 ID=rna9670|Name=rna9670|organism=Nannochloropsis gaditana|type=mRNA|length=983bp|location=Sequence derived from alignment at KK037255.1:110215..111197+ (Nannochloropsis gaditana)
CTCGACGCGCTTTCGTCGCTATCATTAAGGACACGGGGGCCTCGTCCTGT
AGCCATGCTGCCCGTCctgcacctccttcttccctccgcttcaccctcct
cgcctgACAACATCCATCACCCGTAGCTATTACCACCGCCTCTATCCCTT
GTTAAAAAGGATTGCACGATGATGTCGTCACTCCTTGCCATCTCTTCCCG
CGCCCTGGCCCTCGCTCttgccccttcctttctcctcctgctcactGGtc
cctccaacctcctccctcctgaccacGCCCGGGTCATTTTCTCCGCCTCT
ATCGCCCGAATAGGAGGGAATCAAAGTGCCCTCGCCACTCTCGTCTCGCA
AGCCTTGCTGCACTATCCCGATGCAGTCCACGCGCCCCCCGACTTCGATG
TTTGGCCGTGGGTGCCGCCGTTGCTGCATGCCTCTGCTGGGGGGAACGTG
GAGCTCACCGAGGTTCTTTTGCAAGCCGGCGCCGACCCCCTCCGTGGATC
CCGGCGACACCGCGACCCGCCCTCACAGGATAAGGATGGGGACAGGGTGg
gacgcggcggggagggagagacgccGTTTTATGTGGCCTGCCAGGGCGGG
TACGAAGGGGTGGTGAGGCGCCTGGGGGACGTGCAGGCGGTGCGGGAACA
GGAGGGACGGGTAACGAACACGGGGCTGATGGCCGCCAGCGAAGGGGGCC
ACGTGGGGGTGGTTCGTTACCTACTGGCATGCTTGTatgccccccacctc
ccctcctctcgctctcgccttccccccctcgacaTCGACGCCCAAGACGC
CCGCGGGGCTTCTGCTCTTCACTTGGCCTGTCGCCGAGACCGCGCGGAag
tcgtctccctccttcttgcagCCGGGGCCAGCTTGGAGGCGCGagtggga
ggacgggcggggaggcgggagggagggagggagggagggagggagggagg
gaggaaggtaggtagggagggagggagggagag
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Coding sequence (CDS) from alignment at KK037255.1:110215..111197+

>rna9670 ID=rna9670|Name=rna9670|organism=Nannochloropsis gaditana|type=CDS|length=815bp|location=Sequence derived from alignment at KK037255.1:110215..111197+ (Nannochloropsis gaditana)
ATGATGTCGTCACTCCTTGCCATCTCTTCCCGCGCCCTGGCCCTCGCTCt
tgccccttcctttctcctcctgctcactGGtccctccaacctcctccctc
ctgaccacGCCCGGGTCATTTTCTCCGCCTCTATCGCCCGAATAGGAGGG
AATCAAAGTGCCCTCGCCACTCTCGTCTCGCAAGCCTTGCTGCACTATCC
CGATGCAGTCCACGCGCCCCCCGACTTCGATGTTTGGCCGTGGGTGCCGC
CGTTGCTGCATGCCTCTGCTGGGGGGAACGTGGAGCTCACCGAGGTTCTT
TTGCAAGCCGGCGCCGACCCCCTCCGTGGATCCCGGCGACACCGCGACCC
GCCCTCACAGGATAAGGATGGGGACAGGGTGggacgcggcggggagggag
agacgccGTTTTATGTGGCCTGCCAGGGCGGGTACGAAGGGGTGGTGAGG
CGCCTGGGGGACGTGCAGGCGGTGCGGGAACAGGAGGGACGGGTAACGAA
CACGGGGCTGATGGCCGCCAGCGAAGGGGGCCACGTGGGGGTGGTTCGTT
ACCTACTGGCATGCTTGTatgccccccacctcccctcctctcgctctcgc
cttccccccctcgacaTCGACGCCCAAGACGCCCGCGGGGCTTCTGCTCT
TCACTTGGCCTGTCGCCGAGACCGCGCGGAagtcgtctccctccttcttg
cagCCGGGGCCAGCTTGGAGGCGCGagtgggaggacgggcggggaggcgg
gagggagggagggagggagggagggagggagggaggaaggtaggtaggga
gggagggagggagag
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Synonyms
Publications