rna9666, rna9666 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9666
Unique Name	rna9666
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1470
Alignment location	KK037255.1:95997..97336 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100680g1.3113.mrna
Orig protein id	gnl\|cribi\|Naga_100680g1.3113
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:95997..97336 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100680g1	gene9386	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9666	rna9666-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21039.1	cds9635	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:95997..97336-
coding sequence from alignment at KK037255.1:95997..97336-

mRNA sequence

>rna9666 ID=rna9666|Name=rna9666|organism=Nannochloropsis gaditana|type=mRNA|length=1470bp
ATGAACCAGATATACGTGGACGAGGAGGGACGCCTTCGCTTGGGCGGGTT
TGAAGAAGCCACGCTCTACCATGCGGGGGGGGGCGGAGGGACCGGGGGAG
AGGGAGGAAGCGAAGGAGGGCGGGGGAAAGGGAAAAGGAAAGAGGTAGAC
TTGGACGTGGGCCGCCGCAATTTGGAAGAAGTGTGGGAGGAAGGAAAACG
GCGGCGGAAGAATTTAACGGCCCCGGAGGTCCTCTTGGGAGGAGAAGCGA
ACTTTGCCAGCGACGTCTGGTCGGTAGGGTGCGTGCTCTCCGCCCTCCTC
CTGGGCCGCCTCGCGTTCGAAGCCCGGACGGGGCGGCAGTTGATGGAACA
CATTTACCGGGGCGTGGGCTCCTACGACAATGTCTGGAAGCTGGGGCAAT
TCTTGCCGTACTACCCCCTCTGTAAACCACAACGGGCCTCCGGGTACGCG
CCCCGCACGCACAAACATGTCCGCGAATTGCTCGCAGTGGCCCGGGGGAA
GAAGAAATTGCCAATTTCCGATGAGGCAGCAGCCTTGCTCCCAGCCCTCT
TGCATCTGAACCCGATGGAACGACCGAGCGCACGGGAGTGCCTGGAGGTG
GCCCCGTACTTTCAAATTTTCAAAAAACCGTTGCCTGGGACCCTTATCTC
CGGGATGGGAATCGGAGCGGGAGAAGGGAGCCGGGCGCGCGCGGCGTTGC
TGCAGGAGGCGAAGGACGCGTGGATCCAGATCACGGCGGTCGTCCCTGCC
CTCCTCCCCGGCATGTCACCCCGGCCCTTTCAAGGATGGGTGGAGGAAGG
GAGCGAGGCTGCGGGGGAGGGTGGAGAAGCCCGGAATGGCGGCGGGACTA
GGGCCCCAGGCTGGAAAAAGGATCCGGAGGCACTGGCAAACCTTTTCACC
TTCTCATCCGGCGCCCCTCCCGACTCCACTGGGAGAAAGGAGGGCAAAAC
CAAGGCCGTTTTTACCTCCTCATCTTCCGGCACGGACTCTCGAGGTGAAA
ACGGTCGCTCCCTCCCTTCGTCCCTCATGTCCTCCTTCCCTTCCTCCGCC
CCTGGCGCCCGCAGCAGCCAGCCTTCGTCCCTTCCGCCCGAGGGGGACGA
CGTGGACATGGAGATCTCGTCGGAGGACGAGGAGAATTATCGTTCGAAAG
CGGCGCATCGTGCCGACGAAGAGCGGCGGGATGGTGGGAAAACACAGGCA
GGGGGAGATAGGCCCTCTTCCTCTCGCATTGTCGTGAAGGAGGACGGAGA
GAGCGAGTGGAGCGCCGTTTGCTGTCGCATCCTCATCAGCGAGCGGACAC
AAACGGCATGGAGAGTCTCTACTGTGATTTTTGAAAAGAATTTGATGACG
AATTTCACAGGAGGTGGACGTGAAATTGACGAAGAAGATACAAATCTAGG
GTCGAAGCCGAACTTTCCTTGCATATCTGGTAGGTATAGTAAAGAAAAAA
ATATGAAGCACAGCACGTAA

protein sequence of rna9666

>rna9666-protein ID=rna9666-protein|Name=rna9666|organism=Nannochloropsis gaditana|type=polypeptide|length=94bp
MADVFSNGAISVDGFLFHAVTTQHELLSFFRLALSFISSLSAANRMREAL
CASTAILFRIYGHAHATPSKCFHMLMPVGSHLRLNTSSTLVAAI

mRNA from alignment at KK037255.1:95997..97336-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9666 ID=rna9666|Name=rna9666|organism=Nannochloropsis gaditana|type=mRNA|length=1340bp|location=Sequence derived from alignment at KK037255.1:95997..97336- (Nannochloropsis gaditana)
ATGGCTGACGTCTTCAGGTAAAGGGGGGTGATTATGCTCCTCAACTAGAT
CATCCTTGAAAAGCCCCAACATTGCTTTCGATTTCTTTTGAAGGTTCTGT
GGACGGATCAACAAGTCCTTTGCATCTGTGGGGGCTGGAGGAAAGGAAAT
CGTTTTCAGCTGGCTGCCAGAGCTGTGTACGTGCCCAACGAATGTTCCCG
CCGATAACGTTGACGAATCCTTGTTGCGCACCATACATACGAGACTTTCC
CCTTTAAAAAGTTCTCACGTACCCTCGCTACTGACGCGACACATTCAGGT
CCATTTTGGGGAAGGCGCACGGTTCCGAGGCCCCGACAACATTCGACATT
GCTTAACACGGAAGGCAACGTGACGTCACATTGTTTTTTCTACATAGGAC
ATCACTCCACCGAGGATAACCCCGCATTTATAAAACTACGAGCAATGGCG
CTATATCTGTGGACGGATTTTTATTCCATGCGGTGCGTGAAATCAAGATG
CTGGACGGGTAAGCAATGGCAGGGGCTCGTTCACTCGGGCAGGCAAGCTG
TCTCACCCACTCGGCGACGGCCTCTACCATGACAAGCCCAGCCTGCCCCT
TGTTCATTGTTCCTCTCATTATGTCGACGTACTACTTTTGGTACGGACTC
GCAGTGTGCTGCTTTAACACGTCGGTGTTTGCTGGTCAAGCCACACGTCT
ATGGGAATGAGCACATTCGGAAGTCTGGAGGAAAGGGCCTCGAATGCCTT
CTCGTATGGGTCCATTCTTGTTCGTTTCTTCCTAAGCTTCTGTGTGTGTA
TTGACTTTTGTGGTTGTCTCTTTTATTGCATTCTTCATCTTTTTTCTACA
CTAGGTGACGACACAACATGAATTGCTGAGTTTTTTTCGCCTTGCCCTTA
GCTTCATCTCCTCCCTTTCTGCGGCCAACCGCATGAGAGAAGCTCTGTGC
GCTTCCACGGCTATCCTTTTCAGGATTTGTTGGATTTGAGCGGCCGAAAT
GTCGTAGGAGGAGTGGCGTTCGCACCCAATAAAGCGCATACGCTCTGCAT
GCTCCGCCCACCGCCGGATGGCCCGGCCGACCTGGTCGTCTGGGGAGGGG
CGGGCGTCGCCTTTCGTCAGGAGGCAGAGGACCTTTCCTTGAGGACTTCT
ACCTGGTGCATTGGCGGGGTGGAGAATGGGGACGGCGGGAACTGGATGAG
TGGGAAGGCTTATCTTTCGAGGAGACAAAATGGCAGATGGGCATGCGCAC
GCGACGCCTTCTAAGTGTTTTCATATGTTGATGCCTGTAGGCTCGCATTT
ACGTTTAAATACATCCAGCACCCTGGTTGCGGCGATATAA

Coding sequence (CDS) from alignment at KK037255.1:95997..97336-

>rna9666 ID=rna9666|Name=rna9666|organism=Nannochloropsis gaditana|type=CDS|length=1140bp|location=Sequence derived from alignment at KK037255.1:95997..97336- (Nannochloropsis gaditana)
ATGGGCATGCGCACGCGACGCCTTCTAAGTGTTTTCATATGTTGATGCCT
GTAGGCTCGCATTTACGTTTAAATACATCCAGCACCCTGGTTGCGGCGAT
ATAAGTGACGACACAACATGAATTGCTGAGTTTTTTTCGCCTTGCCCTTA
GCTTCATCTCCTCCCTTTCTGCGGCCAACCGCATGAGAGAAGCTCTGTGC
GCTTCCACGGCTATCCTTTTCAGGATTTCAATGGCGCTATATCTGTGGAC
GGATTTTTATTCCATGCGATGGCTGACGTCTTCAGATGGGCATGCGCACG
CGACGCCTTCTAAGTGTTTTCATATGTTGATGCCTGTAGGCTCGCATTTA
CGTTTAAATACATCCAGCACCCTGGTTGCGGCGATATAAGTGACGACACA
ACATGAATTGCTGAGTTTTTTTCGCCTTGCCCTTAGCTTCATCTCCTCCC
TTTCTGCGGCCAACCGCATGAGAGAAGCTCTGTGCGCTTCCACGGCTATC
CTTTTCAGGATTTCAATGGCGCTATATCTGTGGACGGATTTTTATTCCAT
GCGATGGCTGACGTCTTCAGATGGGCATGCGCACGCGACGCCTTCTAAGT
GTTTTCATATGTTGATGCCTGTAGGCTCGCATTTACGTTTAAATACATCC
AGCACCCTGGTTGCGGCGATATAAGTGACGACACAACATGAATTGCTGAG
TTTTTTTCGCCTTGCCCTTAGCTTCATCTCCTCCCTTTCTGCGGCCAACC
GCATGAGAGAAGCTCTGTGCGCTTCCACGGCTATCCTTTTCAGGATTTCA
ATGGCGCTATATCTGTGGACGGATTTTTATTCCATGCGATGGCTGACGTC
TTCAGATGGGCATGCGCACGCGACGCCTTCTAAGTGTTTTCATATGTTGA
TGCCTGTAGGCTCGCATTTACGTTTAAATACATCCAGCACCCTGGTTGCG
GCGATATAAGTGACGACACAACATGAATTGCTGAGTTTTTTTCGCCTTGC
CCTTAGCTTCATCTCCTCCCTTTCTGCGGCCAACCGCATGAGAGAAGCTC
TGTGCGCTTCCACGGCTATCCTTTTCAGGATTTCAATGGCGCTATATCTG
TGGACGGATTTTTATTCCATGCGATGGCTGACGTCTTCAG

Synonyms

Publications