rna9661, rna9661 (mRNA) Nannochloropsis gaditana

Overview
Namerna9661
Unique Namerna9661
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1038
Alignment locationKK037255.1:86026..86549 +

Link to JBrowse

Properties
Property NameValue
ProductABC-2 type transporter
Orig transcript idgnl|cribi|Naga_102883g1.6585.mrna
Orig protein idgnl|cribi|Naga_102883g1.6585
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:86026..86549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102883g1gene9381Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9661rna9661-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21043.1cds9630Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9661 ID=rna9661|Name=rna9661|organism=Nannochloropsis gaditana|type=mRNA|length=1038bp
ATGGAAACGCTCTCCCAGTATTTCTTCTGGCGCCCTGTCTTCGTCCACGA
GCTCAACAGCCACACCTACTCCCCTCTCTCCTTCCTCCTCGCCTCCCCCC
TCACCCTCCTACCCTGGGTGGGCTCGGCCTACCTCCTCTTCCTCTTCCTC
TCCTTCCTGATGGCCGACATCCCCACCCCGTTCTTTCCCTCCTTTCTCCT
CCCCCTCCTCCTCATCTACCTCGTCCTTCTCACCACCTACTTCCTCACGC
TGGGCCTCTGTGCCCGGTTGAAACGTCCGGAGCTTGCCTACGTCCTAACA
CCCATCACCTTCGTCATCATGGGCTCTTTGACAGGTTTCATGGTCATCCC
CTCCCAGACCCCCTTCCTGTGGCAGCAGATCCAACGTGTCCTCTACACTC
GCTGGGCTTACCGCGGCGTGGTCCTCCTCCTCTTCGCCTCCCGTCCGGAC
AAGGCGGCCGTTTTGGACCGTTTGGGATTTGAATTCAAATTTGAAGGGGA
GAGGGAGGAGATTGGGACCTGTTTTGCGGTGGTGCTGGGGTGGTGTTTGC
TCTTGGGGAGCGGGGAGATGATGGCAGTCATGGGCCCGTCCGGGTCTGGG
AAGTCCACCTTCCTGGACGTGTTGGCGGGGCGGAAGACGCAGGGGAGGGT
GGGGGGGCAGGTGGTGTGGGAGGCGGGGGAACAGGCCGGTGGCCGGTGCC
GATGGGCCTACGTGACGCAGGAGGACGTGCACTTGCCCAGCCTGACGGTA
CGAGAAACACTGTGGTACGCGGCCTTGCTGCGGTTGGAGGAAAGCGTGGG
GCCACAGACGCGGCTGGCGCGTGTGGAGGCGCTAGAGGGCATGTTGGGCT
TGAGTGAGGTCCGAGACACCAGCGTGGGAGGGGCCGGCTTCAAAAATCCC
TTAAGCGGGGGAGAACGGCGGCGGTTGAGCGTCGGGGTGGAGATCATCGA
CCTACCGACAGTCCTTCTCGGGGACGAGGTGACCACGGGTTTGGATTCTG
CCACGGCGCTGGAGGTCCTGGGGGTGGGGGGCATGTGA
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protein sequence of rna9661

>rna9661-protein ID=rna9661-protein|Name=rna9661|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
MPSLFDVRPLYYKEKGANVVRTLAFCLSLDTPYLLINACTSCLFTLVLHL
LVPLRPGLGPFLYYAGALLLMSWTSLSLIVFLSSTLPSIRRLSSLWSFLG
YVITVSAGFMARVPSMPAWANLATLFIPGAFM
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mRNA from alignment at KK037255.1:86026..86549+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9661 ID=rna9661|Name=rna9661|organism=Nannochloropsis gaditana|type=mRNA|length=524bp|location=Sequence derived from alignment at KK037255.1:86026..86549+ (Nannochloropsis gaditana)
atgccctccctctttgacGTCCGCCCGCTGTACTacaaggaaaaaggcgc
gaacgTGGTCCGTACCTTAGCTttctgcctctccctcgacacCCCGTACC
TCCTCATCAACGCCTgcacctcctgcctcttcaccctcgtcctccacctc
ctggtGCCGCtccgccccggcctcggtcccttcctctactacgccggcgc
cctcctcctcatgtcctggacctccctctccctcatcgtcttcctctcct
ccaccctcccctccatccgccgCCTCAGTTCCCTCTGGAGCTTCCTGGGC
TACGTCATCACTGTCTCAGCCGGCTTTATGGCCCGAGTGCCTTCCATGCC
CGCCTGGGCGAACCTGGCCACGCTCTTCATgtgcgtcctcccgccctccg
tccttccctccctcgttccctccttctctccctccctctgtccctccatg
tttccatccttcctttctttgtcCTGGGGCCGTGTTGatcctcgtccttc
ctcaGTCCTGGTGCTTTTATGTAA
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Coding sequence (CDS) from alignment at KK037255.1:86026..86549+

>rna9661 ID=rna9661|Name=rna9661|organism=Nannochloropsis gaditana|type=CDS|length=798bp|location=Sequence derived from alignment at KK037255.1:86026..86549+ (Nannochloropsis gaditana)
atgccctccctctttgacGTCCGCCCGCTGTACTacaaggaaaaaggcgc
gaacgTGGTCCGTACCTTAGCTttctgcctctccctcgacacCCCGTACC
TCCTCATCAACGCCTgcacctcctgcctcttcaccctcgtcctccacctc
ctggtGCCGCtccgccccggcctcggtcccttcctctactacgccggcgc
cctcctcctcatgtcctggacctccctctccctcatcgtcttcctctcct
ccaccctcccctccatccgccgCCTCAGTTCCCTCTGGAGCTTCCTGGGC
TACGTCATCACTGTCTCAGCCGGCTTTATGGCCCGAGTGCCTTCCATGCC
CGCCTGGGCGAACCTGGCCACGCTCTTCATTCCTGGTGCTTTTATGTAAa
tgccctccctctttgacGTCCGCCCGCTGTACTacaaggaaaaaggcgcg
aacgTGGTCCGTACCTTAGCTttctgcctctccctcgacacCCCGTACCT
CCTCATCAACGCCTgcacctcctgcctcttcaccctcgtcctccacctcc
tggtGCCGCtccgccccggcctcggtcccttcctctactacgccggcgcc
ctcctcctcatgtcctggacctccctctccctcatcgtcttcctctcctc
caccctcccctccatccgccgCCTCAGTTCCCTCTGGAGCTTCCTGGGCT
ACGTCATCACTGTCTCAGCCGGCTTTATGGCCCGAGTGCCTTCCATGCCC
GCCTGGGCGAACCTGGCCACGCTCTTCATTCCTGGTGCTTTTATGTAA
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Synonyms
Publications