rna966, rna966 (mRNA) Nannochloropsis gaditana

Overview
Namerna966
Unique Namerna966
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length854
Alignment locationCM002456.1:851633..853854 +

Link to JBrowse

Properties
Property NameValue
Productmitochondrial pyruvate dehydrogenase kinase
Orig transcript idgnl|cribi|Naga_100124g14.8339.mrna
Orig protein idgnl|cribi|Naga_100124g14.8339
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:851633..853854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100124g14gene929Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna966rna966-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29718.1cds966Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna966 ID=rna966|Name=rna966|organism=Nannochloropsis gaditana|type=mRNA|length=854bp
CACAGAGAGGGCTCTCTGGATACTGTACCTGCACATGCTCCGCCTGGCCT
TGCGACCCGGCGACGCGGACACATTTATGAATAGGATCGTCGGATGTGGC
CTAATGATGCTCACGATTGTCCAGGGGTACAACCTAGGTGGCAAGAGCAC
TATCAATAGGCTAGGATCCCGTCAGATGCAACGGCAGAATATTTTCACAT
CATATTCGGCGTCATCGAATAACTTTTACAGCAGCTCTTTTCAACCCTTG
GGGGCCCCGCCAAGAACAATTGAGCAGGAGGAAGGTTTCTCGCTCGGCTT
GCAGGCGGAGAAATCGGGGGGGCAGTTTGAGGAGTACGTTGTCAACGTGA
GCAAGCCTTTGGGTGTGGCAGTCGAGGAGGCGGGAGACGGCTCTGGTATG
GTGTACGTGGTAGAGGCGAACGAGAAGGCCCAGGCAGCTGGAGTCGAAGT
CGGCGACGTTATAGTGGGATGCTCCTTCATATTTGATGACTCTTACCTGG
TGAACGTGACGGGCAAGGGCGTGGAGCGGGTTGAGTCACTCATTCGCTCC
CGGGGGCCTGACTACGTTTGCCTGCGTCTGCGCAAAGGGTGTGACTACCA
TCTCCTCGAGAGGGGGGACCTTGACGCGCGGCGAGAAACATATGATGATG
AGGCGACCCTTGAGCCTGAGGAGCAGGAGGCGCGGTGGATCCGCCGAGCA
GAAAGCATTTTCATAGACGAGTGGGGCTGGCAGACCCCGGAGGGAGAGGG
GGACGAAGAGCAAGAGAACTGGTAACGTGGCATAATGAAGAGTAGCACGA
AATGTAAACGACGGTAAAACACTATCTCTCGTGCATTTACGAATTCTTCA
GAGA
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protein sequence of rna966

>rna966-protein ID=rna966-protein|Name=rna966|organism=Nannochloropsis gaditana|type=polypeptide|length=523bp
MIARHVQFLKTNLYQYASKRRFAQIATSSTLFPHQSHLQQHQQHGQGGAA
GRSTPSFLQQQTLKADKLHTPTKIAGASVPWSNSAHNVSDSKSDILRDEE
ATILSYAKKRSERVSLRSLAEVGLGTRPWLSSLRDAMSLENPLCSLNVRL
CRVSDPHSPAQKGLLRMATFLHRELPIRFARGITFIDKLDSSRQAPSLRV
VREWYRESFRDVVSSPCPVTDGCEESFVKVLTRVRDRHADELLLVARGVF
ELRAKLGMDALDGRGGREALHAQLDELHLKRIALRILVGHYLALHQPPRP
NYVGIICTRTKLQDVIETAAADARWICKQRFDGCAPRVEVIGGEGMVMAC
IPESLYYLSMELIKNSLRAVAERYNEALFRDGSMAHGAGGDEGCVPSIKV
ILSREYSLTEGQQVVIEVRDEGGGIPPEDLGKVFCYLFSTAADADVQQLV
MDRHASGLGGERSKHNRGNSKKVPLAGLGYGLGIAKSYALYFGGELELKN
RPGDGCSVFVTLSRLGECKEPLV
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mRNA from alignment at CM002456.1:851633..853854+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna966 ID=rna966|Name=rna966|organism=Nannochloropsis gaditana|type=mRNA|length=2222bp|location=Sequence derived from alignment at CM002456.1:851633..853854+ (Nannochloropsis gaditana)
TCCTGTCTGCCATGCGCTAACGCTAGCACTGCGCCCAGGTCATTTGAGAG
AGGTACTACCTACTGTAGTATAGTATGATGCCAGAGGACTTCGGGCGAGC
AAGGGTAGAGAAGCGTGCCTGACACTTCAAGCTCGAAAGAGTTGTGCATT
GCTGTCGGCATATTATCTGATGTAAACTTTTTCGCACCActcaggagaag
gaggagggagttgTAGGTACGCTGGGGCATCGATCTCTACAGGGATATTC
CCAGAAAGCCAGGAAGCCAGGTGTTtccgggagaaggcgagctGTGTGTA
GGGGAGCAGAGATTTCTACGGCAACTAGCCATGATAGCACGTCATGTACA
GTTTTTGAAAACAAATTTATATCAGTATGCGTCAAAGCGTAGATTTGCAC
AGATCGCCACTTCCTCTaccctttttccccatcAGTCGCATctccagcag
caccagcaacacggacagggaggcgCTGCAGGACGCTCCACGCCATCTTT
TTTGCAACAGCAGACTCTTAAAGCAGATAAATTACATACGCCTACGAAAA
TAGCAGGTGCATCCGTGCCTTGGTCAAATTCAGCTCACAACGTAAGCGAT
TCCAAATCGGATATCCTCCGAGACGAAGAAGCGACTATACTTTCATATGC
GAAGAAACGGTCGGAACGGGTGTCTCTGCGCAGTCTAGCGGAAGTGGGCT
TAGGAACACGACCTTGGCTGTCGAGTCTGAGAGATGCCATGTCCCTTGAA
AATCCCCTCTGTTCCTTGAACGTGCGTCTTTGCAGGGTGTCTGACCCCCA
CTCCCCGGCCCAGAAGGGGCTTCTGCGCATGGCGACCTTCTTGCACCGAG
AGCTCCCGATTCGCTTCGCACGCGGCATCACTTTCATCGACAAATTAGAT
TCAAGTCGACAGGCGCCCAGTTTACGTGTGGTTCGAGAGTGGTACAGGGA
ATCCTTTCGAGACGTGGTGTCAAGCCCGTGCCCCGTCACCGACGGCTGCG
AGGAGAGCTTCGTGAAGGTGCTGACGCGTGTCCGGGACAGGCACGCGGAC
GAACTCTTGCTGGTTGCGCGAGGGGTCTTTGAACTGCGAGCCAAGCTAGG
TATGGACGCATtggacgggaggggcggtcGGGAAGCTCTCCATGCGCAAC
TCGACGAACTCCATCTGAAGCGCATAGCCCTCCGCATCCTCGTGGGTCAT
TACCTGGCTCTGCACCAGCCCCCTCGCCCCAATTACGTGGGGATAATCTG
CACGCGCACAAAACTTCAAGATGTGATCGAGACGGCGGCTGCGGACGCAC
GCTGGATTTGCAAGCAACGCTTCGACGGTTGCGCCCCGCGAGTGGAGGTg
attgggggggagggtatgGTGATGGCCTGCATTCCGGAAAGCTTATACTA
TCTGTCGATGGAACTCATCAAAAATTCATTGCGGGCAGTAGCAGAGCGCT
ACAATGAGGCTTTGTTTCGTGACGGATCAATGGCAcatggcgcgggcggg
gacgaagggTGTGTGCCCTCGATCAAAGTCATTCTCAGCCGAGAGTACAG
TTTGACAGAAGGGCAACAGGTGGTGATCGAGGtgcgggacgaaggggggg
ggattccGCCTGAGGATCTAGGTAAGGTTTTCTGTTACCTTTTTTCCACT
GCGGCTGATGCGGATGTGCAGCAACTCGTTATGGACCGTCACGCCTCGGG
GcttgggggggaaaggagtaAGCATAACAGAGGGAACTCAAAGAAAGTGC
CTCTCGCAGGTCTGGGGTATGGTTTGGGCATTGCCAAGTCATATGCTTTG
TATTTTGGGGGGGAGTTGGAATTAAAAAATCGGCCAGGAGATGGCTGCTC
TGTGTTTGTGACTTTGAGCCGGCTTGGTGAGTGCAAGGAGCCATTGGTCT
AAGGTCAGAGTGGGAGTGACCTGGTCATGTATATAGTGCTGCATCTGTGG
AAAAGCGATCGACAATGACTTTTGTACTACGTGTGAAAAAATACTTGCAA
AGTTAATTATCTTCATCATGGGGATGGGAGGCCTTCGAGTGCGAGGTGGA
TGTTGAGAAGGTAATCAAATTAATGTATGTGCAAGGGTTACTTCATTACT
TGATACGCTAAACTGGATTTTGTTCGACAAATCTGGGAAAAGGTGCCATA
CCCTTCTTTTAAAGTCTGTTCATCTAGCGTCGGCTCATTAAGAAAAAAAA
CGTAAATTGTCTCTCATCTACA
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Coding sequence (CDS) from alignment at CM002456.1:851633..853854+

>rna966 ID=rna966|Name=rna966|organism=Nannochloropsis gaditana|type=CDS|length=1572bp|location=Sequence derived from alignment at CM002456.1:851633..853854+ (Nannochloropsis gaditana)
ATGATAGCACGTCATGTACAGTTTTTGAAAACAAATTTATATCAGTATGC
GTCAAAGCGTAGATTTGCACAGATCGCCACTTCCTCTaccctttttcccc
atcAGTCGCATctccagcagcaccagcaacacggacagggaggcgCTGCA
GGACGCTCCACGCCATCTTTTTTGCAACAGCAGACTCTTAAAGCAGATAA
ATTACATACGCCTACGAAAATAGCAGGTGCATCCGTGCCTTGGTCAAATT
CAGCTCACAACGTAAGCGATTCCAAATCGGATATCCTCCGAGACGAAGAA
GCGACTATACTTTCATATGCGAAGAAACGGTCGGAACGGGTGTCTCTGCG
CAGTCTAGCGGAAGTGGGCTTAGGAACACGACCTTGGCTGTCGAGTCTGA
GAGATGCCATGTCCCTTGAAAATCCCCTCTGTTCCTTGAACGTGCGTCTT
TGCAGGGTGTCTGACCCCCACTCCCCGGCCCAGAAGGGGCTTCTGCGCAT
GGCGACCTTCTTGCACCGAGAGCTCCCGATTCGCTTCGCACGCGGCATCA
CTTTCATCGACAAATTAGATTCAAGTCGACAGGCGCCCAGTTTACGTGTG
GTTCGAGAGTGGTACAGGGAATCCTTTCGAGACGTGGTGTCAAGCCCGTG
CCCCGTCACCGACGGCTGCGAGGAGAGCTTCGTGAAGGTGCTGACGCGTG
TCCGGGACAGGCACGCGGACGAACTCTTGCTGGTTGCGCGAGGGGTCTTT
GAACTGCGAGCCAAGCTAGGTATGGACGCATtggacgggaggggcggtcG
GGAAGCTCTCCATGCGCAACTCGACGAACTCCATCTGAAGCGCATAGCCC
TCCGCATCCTCGTGGGTCATTACCTGGCTCTGCACCAGCCCCCTCGCCCC
AATTACGTGGGGATAATCTGCACGCGCACAAAACTTCAAGATGTGATCGA
GACGGCGGCTGCGGACGCACGCTGGATTTGCAAGCAACGCTTCGACGGTT
GCGCCCCGCGAGTGGAGGTgattgggggggagggtatgGTGATGGCCTGC
ATTCCGGAAAGCTTATACTATCTGTCGATGGAACTCATCAAAAATTCATT
GCGGGCAGTAGCAGAGCGCTACAATGAGGCTTTGTTTCGTGACGGATCAA
TGGCAcatggcgcgggcggggacgaagggTGTGTGCCCTCGATCAAAGTC
ATTCTCAGCCGAGAGTACAGTTTGACAGAAGGGCAACAGGTGGTGATCGA
GGtgcgggacgaagggggggggattccGCCTGAGGATCTAGGTAAGGTTT
TCTGTTACCTTTTTTCCACTGCGGCTGATGCGGATGTGCAGCAACTCGTT
ATGGACCGTCACGCCTCGGGGcttgggggggaaaggagtaAGCATAACAG
AGGGAACTCAAAGAAAGTGCCTCTCGCAGGTCTGGGGTATGGTTTGGGCA
TTGCCAAGTCATATGCTTTGTATTTTGGGGGGGAGTTGGAATTAAAAAAT
CGGCCAGGAGATGGCTGCTCTGTGTTTGTGACTTTGAGCCGGCTTGGTGA
GTGCAAGGAGCCATTGGTCTAA
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Synonyms
Publications