rna9659, rna9659 (mRNA) Nannochloropsis gaditana

Overview
Namerna9659
Unique Namerna9659
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1654
Alignment locationKK037255.1:81896..82721 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100221g1.4574.mrna
Orig protein idgnl|cribi|Naga_100221g1.4574
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:81896..82721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100221g1gene9379Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9659rna9659-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21050.1cds9628Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9659 ID=rna9659|Name=rna9659|organism=Nannochloropsis gaditana|type=mRNA|length=1654bp
CCGACGAGTCCCTCCCGCGGGCCTAGAGTGGCCCTGGATCAAGAGACGTT
GCCCTTTGGTCGCGGCATATCACCGCTGTCCTCGTTTTGCGCCGGTCGAT
GGCTCAAAGCTTATATAAATGCACCACATGGAAAATCCGACGATTTCTTG
CTTCCTTGCTGCCACTGGATATACATCGTTCCGAGTTGCTCCTCCCGGTT
GTGGGGGTTTCCTGCACGCGATTGTCGCAGATCTGTTCCATGATATTCCC
CAACCGTACACTGGACATTACAGGCAACCACAAGGGAAGGTTTTACCTTT
TCTGTAGCCAGCCGCAGTCATGCGTTCAAGTCTCGCCCTATGTGCGGTGG
GCATGGTGGGCCGGCCGGGGCAAGGGATGGCAAGCACCAGAAGAGCAGCA
CTTGGGAAGGCAGTTGCCTCGCGCGACCTGTCCGGAGTCATTTTCAGCAA
GTGGAGTCGCTTGTTCCACGCTCAAAGCTTTGGCTACGTGGGTGGCATGA
CGAAGGCCGTGAAGGCCGGAAGTAGCAGCCTGGTAAACAGCACAGGAAAA
CGACCGCCGGCCCTGGAGGCCTCGCGCACGTGCACAGCTCGACACGGTGG
ACGGTCCCTTGTGTGTGGTAGCAGATACGGAGATGCCAAGTGGATGCAGG
GGCAGGGACGGAGATTCTCCGTCTACAGGAAGCGAGAGAAGTTGACGGTG
GTGCTGGACATGGACGAATGCCTGCTCCACAGCCGTTTCGAGGAGGACAT
GCGGGACGAACGGGGCCGGGAGCTGGCCCATCAACTTCTTCCCAACGGTG
ACTCGGAGTCTTTCCACTACCAGCACCAGGCGGATGTAGGGGAGGCCTTG
GGAGACGTTCGCCACCGGAGTGTGGATTATTTTTGGCTAGAGTTGGAGGA
GGGAGAGCGGGTGCGAGTTAACCTCCGGCCCGGTGTAGAGGCCTTCCTGC
AGCGCCTGAGCGACGAGTACAACGTCTTTGTGTTCACAGCCGCCACAGAG
ACCTATGCTCGACCAGTGTTGGACCGGTTAGACCCCACCGGTTCCCTGTT
GGACGGCCGCTTCTACCGACCCGCCTGTCGGCATGTGCACGGCACGTATC
TGAAGGACTTAAGGAGGATTCAAGCGGGCTTGGGGAAGGCGGATTTGTCC
CGGGTGGTGCTGGTGGACAACAACCCCTTGTCCTTCGTGCCTCAGCCCGA
GAACGGCATCCTCGTCCCCTCCTTCTACGACGACGCCGAGGATCGAACCC
TGGAGGCAGTGGGTGAGATGATCGACCGGCGCTTAGCCCCCTTGGACGAC
GTCCGTCCCTTTTTGGGCGACTTGTTTCAATTGCGCGCTCAGCTCCAGCT
GGTCCGACGCCGCCTGTTGGGAGCGGAGGAGCGGAAAGAGGCCGGGGAGG
AGGCTGGGGGGGAGGCTGGGGAGGGGCAGTGGCAAGGCCAGGAGAAGAGC
GGATGATCACGCAAAGCCGTGGTGCGGGAAGGGCTTGTCCGAGGAGCGTG
CAGCATGTACATAGCATTTGAGCATCTAAATAAGCCACTGGTGACTTGAT
CAGGGGCAGGGGGAAAAACCTTGCAGCACAGAGAGGCACGTCCCTGCATC
TTGCAAGGGCGTGGGTTTTGTAACGGCCTAAGAAAAGAATTGCCATGTCA
ATTT
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protein sequence of rna9659

>rna9659-protein ID=rna9659-protein|Name=rna9659|organism=Nannochloropsis gaditana|type=polypeptide|length=113bp
MKKIKEGPVEARLEPPAHGTSTPLLKYQRRTHRNKSRRKFHSYRQKAGTA
TVRCRARRQKNGRRTLVRRTKELRFVSRSPRTMCPTTFLPAALPFPPASL
LSSSLPPTGPEGQ
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mRNA from alignment at KK037255.1:81896..82721+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9659 ID=rna9659|Name=rna9659|organism=Nannochloropsis gaditana|type=mRNA|length=826bp|location=Sequence derived from alignment at KK037255.1:81896..82721+ (Nannochloropsis gaditana)
TAAAACAGCTAGGGCAGGACATGGATAGAGCGTCCTTTGAAGGGAACGAC
AGGCAGGAGGGTGGAATATCTGGTATTGTGCGGCATCATGAAaaagatca
aggaggggcCGGTCGAAGCCCGGCTCGAGCCCCCGGCCCACGGCACCAgc
acccccctcctcaaaTACCAGAGGCGCACGCATCGCAACAAGAGCAGGAG
AAAATTCCATTCCTATCGCCAGAAAGCGGGGACTGCGACTGTCAGGTGCA
GGGCTCGGAGGCAGaagaacgggaggaggaccctggtgaggaggacgaag
gagctGCGGTTCGTATCACGGTGAGTGTGACACATGCCGATTCTTATAGA
GGCGGGTAGTAAGTATTACGAGAGATTATCCGTGGGGAACAGGTGCCAAG
AAAGATAAGCGTGTAACCTCAACATGGACGGGCCGTGCCTGATaggcccc
tccttcctttcatcACCCTGCCgcactcctcctcgtttGTCGCTCCTGCC
TTTTTGAAAACCATCGCTCCCTTacctcctttgccttcctccctgcaccC
TCCACTCTGCAGGTCACCGCGGACAATGTGTCCTactaccttcctccccg
ctgcccttccctttcctcctgcctccctgctttcctcctccctccctccc
accggaCCCGAAGGTCAGTGACCGGGAAGCGACAGCTCACGGGCAAGGCG
CTGCTGCAGAACGTGACGTTCCAAGTCACTCCTGGGCGCCTTACCTACAT
CATGGGTCCGTCTGGGGCGGGTAAAAGCACTTTGTTGAACCTCCTGGCTC
GTCGATTGAAGCGGGGGtcgatgggg
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Coding sequence (CDS) from alignment at KK037255.1:81896..82721+

>rna9659 ID=rna9659|Name=rna9659|organism=Nannochloropsis gaditana|type=CDS|length=684bp|location=Sequence derived from alignment at KK037255.1:81896..82721+ (Nannochloropsis gaditana)
ATGAAaaagatcaaggaggggcCGGTCGAAGCCCGGCTCGAGCCCCCGGC
CCACGGCACCAgcacccccctcctcaaaTACCAGAGGCGCACGCATCGCA
ACAAGAGCAGGAGAAAATTCCATTCCTATCGCCAGAAAGCGGGGACTGCG
ACTGTCAGGTGCAGGGCTCGGAGGCAGaagaacgggaggaggaccctggt
gaggaggacgaaggagctGCGGTTCGTATCACGGTCACCGCGGACAATGT
GTCCTactaccttcctccccgctgcccttccctttcctcctgcctccctg
ctttcctcctccctccctcccaccggaCCCGAAGGTCAGTGAATGAAaaa
gatcaaggaggggcCGGTCGAAGCCCGGCTCGAGCCCCCGGCCCACGGCA
CCAgcacccccctcctcaaaTACCAGAGGCGCACGCATCGCAACAAGAGC
AGGAGAAAATTCCATTCCTATCGCCAGAAAGCGGGGACTGCGACTGTCAG
GTGCAGGGCTCGGAGGCAGaagaacgggaggaggaccctggtgaggagga
cgaaggagctGCGGTTCGTATCACGGTCACCGCGGACAATGTGTCCTact
accttcctccccgctgcccttccctttcctcctgcctccctgctttcctc
ctccctccctcccaccggaCCCGAAGGTCAGTGA
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Synonyms
Publications