|
|
Properties
| Property Name | Value |
|---|
| Product | ctd small phosphatase |
| Orig transcript id | gnl|cribi|Naga_100221g2.4575.mrna |
| Orig protein id | gnl|cribi|Naga_100221g2.4575 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037255.1 | supercontig | KK037255.1:79240..81559 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9658 ID=rna9658|Name=rna9658|organism=Nannochloropsis gaditana|type=mRNA|length=2889bp
TTTTCACTCCTCCTTACCATATTGAGCGACAAAGCAAAGCACTCGCTGCC
TCGCCTGCCTCGATTTTTGATATGCAATGGCCCTCAACACTCGTTCGCAC
GCGTGCGCGGCCTTCCCTTTCTTTCGTTGGGGGGTTGCCGGCGTACCTTG
TTAGATTTTGACACCCAATTCCCTACAAATGACCACCATAATGCTTTTTA
TGTGAACGTAACCGTTGGGCACATTTTATGCGTGAGGTTGCAATGTCTCC
TGGAGTGTACGTCCCAAAACTCAGGTCCTTTCCCCCCCGGTTACCCTGTA
ACTCAACACACGCACTCATCCTTCTGTATATTCACCTTTTCATTTTACAG
AAACCCAACAAAGATAAAAAAATGTACGCCACGCACACCCACCACTTTTT
CCGGCGTGAGGAGGACGGTATGGTCCGTTCCACGGTGAAGCGTGTGGATG
GTGTCAGCCTGCAAGGACACCTCCATGCCTTGAACAATGAAGGTTTCCAT
GAGGATGTAAAGCGCACAACCAGACACATACAATGCGCGTCAAACCTTGT
CGAAGCCTTGAAGACGACAAAGAAGAGCAGGAGAAGTGGCCGTTACCCCC
CCCAGACCGATGAAGGCCTCACCATCGGCAGCAGCAATAACTTCGACAGG
AGGGAAGGGAGCACAGGGATCAACGCACGTCCTAGCTTTCATTGCAATGA
CAATAATGCGCCTCGGCGTCCAGCGCTCCCGCCGATCGACCTCCGTTTCC
ACAACCACCGCAACGCCAGCCAGCTCGTCAGCACTGGCACCTCTTCCCCT
CCCTCCCCATCCTCCTCCACTACCACCTCGTCCGCTACCTCCCCTTCCCA
TGCCTGCCTGTCCGCCTGCGCCGTCCTCACCAAAGCCAACGTCTCGCAGT
TACCTTTCCTCTCCGCCCCCCCTCCCTGCCCCCGGACCTGCCACTGCCCT
GCCTCTGCCTCCCTGGCCCGACCGAGCATTCCCCAAACGAGGAGGAGCCC
AAACCGCCTGCCCGGCACCTACACAGGCAAGCTCGCCACCATCCACAACG
TGCACAACAATGATCCCACCGCCGGGAGCGTCCAAAGTACCTCCTTGCCT
CGCATTGCTCCCCTCTCCTTCACCCCTCCCCCGCCACCCTTCAGCAATTT
CTATCCTGGACGCACACTCCAATTCTCTGCCTCCCTCCGCTCCTACCGCC
TTCTCCACGGCGTCGGCGGCCTCGATCATTGCAAGCCTCAAACCCACGTG
ATGGCCGCCCAGGCCCTGTCCTCGAGCGGCGCCGCCCCCAAGGTCGCCGT
CAAGATAGTCCAGCAAGCCTGGATCCAACGACATGCCTCCCCGTCCCCTC
CCTTCTCTCCCCTGGCCGCGCCCTTCCTACCCAGTATCTGCAGGCCGGTG
GGTGAGCTGGAGGCGGTGCGACTCCTCAGCTACAGCTCCGTTCACCCCAA
CGTGATGCCCGTGCTTGACGTCGAACAGGACAAGGACTACCTATACTTGG
TCTTCCCCTACGCAGGGGGAGGGGAGCTCTTCGAGAAGGTTTCGGCCTAT
CCCCAGGGTCTCCCGGAATCAACGGCCCAACGGTTTTTCAAGGAAATGTG
TGATGGTTTGGCGCATTTGAAAAGGCACAATTTGAGCCACGGGGACGTGA
GTTTGGAAAATGTGATGCTGTACGATCCCGAGGAAGGAGGAAGGGGAGGA
GGGAGGGAGGGAGCGACCGAGCGAGGGATGGGAAGGAGTGAAATGGGGAT
TTCGTGTGGACATGATGATTCGACGGAGGGGGAGGAAGAAGAGGAGAAAG
CACCCGAAGGAGGCTTAGACAGGCTCCACTGTCGCCTGATCGACTTGGAA
ATGGCCCGCTACGTGCCTACCTCCTCCTGCCCTTCCTCTCCTCCCTCCTA
CTACCCCATGGGCGGAAAGTCCAGCTACGCCCCCCCCGAGGCATTCTACA
ACCGCCCGTCTTCCCCCTACCCCCTGGACCCGTATGCCTGCGACATCTGG
GCCCTGGGTATTTGTCTCTACATGCTCTGCACCGGCCGGCCGCTGTACCA
AGGTCCTGAGGACGACGCTTTCCTCCTTCTGGCGTCGGGAGGGGCACCGG
GGCTCCTGAACCATTACGAGGAGGCGTACGGGTTGACTTTGCCGCGCTCG
GTCCACAAGCTTTTGGCTGGCATGCTCTGCCCCGAAGGAGACCAGCGGAT
GACGCTGGAGGAGGTGATGAGGTGGAAGTGGGTGCAGGCGGGAGGGAGGG
AGGAGGAGGAGGAGGAGGAGGAGGAGTCCTCGGCCGGCTGTTGGTCCCCA
GCAACAACAGTGGAGGACGAGGGGGAGGACGGGGAGGAAGGGGAAGAAGG
TGTGCGGTGCGAGGCATTGCCCATTTTGGTCTTCCCGTGACTGGGAGACC
AGGCGGGAGGGCGTCTAAGGAGTGAGAGGAAAGAGGGGAAAGCGACTGCT
GGACTAGAGGGACCTGTAGGCTTAGGCCAGAAGTAATTCCTGGGTGCATG
ATGACTGATTCGTGCCATGGAGGGGAATGCAAACAAACGATAGACAAGAT
TCCGAGTGAAAAAAGTGCAATAGATGAAGGCCAGCGTAGACGCCGAAAAA
ATGTTTCCGATATAGATGTAAATTTAGCGTGATTAGATGTGTTGGCGAAC
TCAACATTTAGATTGTCTGATACTGTGTTTGATGGCGATGTATTCCGGCG
ACAGCTGGCAACTACACTAACGGGAGCAAAGGGAGGCGGATCACAGAGAA
GAAAGGAAGGGATCAGGCGGGGGCGGAATGGAAGGAAGCTTGTAAGATAC
GTAGCAAGCAGAGCGATCGTCCGGACGGGAGGAGTGGATGCAGTCCTCCC
TGTGGAAGAAAGAAAACAAGTAAAAGGCAGCACGTTGCC back to topprotein sequence of rna9658 >rna9658-protein ID=rna9658-protein|Name=rna9658|organism=Nannochloropsis gaditana|type=polypeptide|length=378bp
MRSSLALCAVGMVGRPGQGMASTRRAALGKAVASRDLSGVIFSKWSRLFH
AQSFGYVGGMTKAVKAGSSSLVNSTGKRPPALEASRTCTARHGGRSLVCG
SRYGDAKWMQGQGRRFSVYRKREKLTVVLDMDECLLHSRFEEDMRDERGR
ELAHQLLPNGDSESFHYQHQADVGEALGDVRHRSVDYFWLELEEGERVRV
NLRPGVEAFLQRLSDEYNVFVFTAATETYARPVLDRLDPTGSLLDGRFYR
PACRHVHGTYLKDLRRIQAGLGKADLSRVVLVDNNPLSFVPQPENGILVP
SFYDDAEDRTLEAVGEMIDRRLAPLDDVRPFLGDLFQLRAQLQLVRRRLL
GAEERKEAGEEAGGEAGEGQWQGQEKSG back to topmRNA from alignment at KK037255.1:79240..81559- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9658 ID=rna9658|Name=rna9658|organism=Nannochloropsis gaditana|type=mRNA|length=2320bp|location=Sequence derived from alignment at KK037255.1:79240..81559- (Nannochloropsis gaditana)
CCGACGAGTCCCTCCCGCGGGCCTAGAGTGGCCCTGGATCAAGAGACGTT
GCCCTTTGGTCGCGGCATATCACCGCTGTCCTCGTTTTGCGCCGGTCGAT
GGCTCAAAGCTTATATAAATGCACCACATGGAAAATCCGACGATTTCTTG
CTTCCTTGCTGCCACTGGATATACATCGTTCCGAGTTGCTCCTCCCGGTT
GTGGGGGTTTCCTGCACGCGATTGTCGCAGATCTGTTCCATGATATTCCC
CAACCGTACACTGGACATTACAGGCAACCACAAGGGAAGGTTTTACCTTT
TCTGTAGCCAGCCGCAGTCATGCGTTCAAGTCTCGCCCTATGTGCGGTGG
GCATGGTGGGCCGGCCGGGGCAAGGGATGGCAAGCACCAGAAGAGCAGCA
CTTGGGAAGGCAGTTGCCTCGCGCGACCTGTCCGGAGTCATTTTCAGCAA
GTGGAGTCGCTTGTTCCACGCTCAAAGCTTTGGCTACGTGGGTGGCATGA
CGAAGGCCGTGAAGGCCGGAAGTAGCAGCCTGGTAAACAGCACAGGAAAA
CGACCGCCGGCCCTGGAGGCCTCGCGCACGTGCACAGCTCGACACGGTGG
ACGGTCCCTTGTGTGTGGTAGCAGATACGGAGATGCCAAGTGGATGCAGG
GGCAGGGACGGAGATTCTCCGTCTACAGGAAGCGAGAGAAGTTGACGGTG
GTGCTGGTAAGCCTTTGGAGGGGGGGAATCAAGGCCTGCGTATTCCGTGC
GTCCGGTGCATACCGGGTCTTTCTCTCTCACTCGTCGTCTAACTGGGTGT
CCCTTTTTTTCTCTGTGTTTGTGACGGCTTGTATTGGGTTCTAGGGGAGA
TATCGGAAACGATGGGCACCTCCACAACCCTTCCTTCCCTCCAGAAGTAA
CCACTTTTTAACCCCCGCCTTCTCCCTTCACCGACGTTCCACTCCCTCCC
TCCCATGTCCCTTCCTTCCTTTCTCCCTCCCTCCCTCCCTGCGCCCCTCC
CTTCCTCCCTCCCGCCCTCCCTCCCTCCTTCTCTCCCTGCAGGACATGGA
CGAATGCCTGCTCCACAGCCGTTTCGAGGAGGACATGCGGGACGAACGGG
GCCGGGAGCTGGCCCATCAACTTCTTCCCAACGGTGACTCGGAGTCTTTC
CACTACCAGCACCAGGCGGATGTAGGGGAGGCCTTGGGAGACGTTCGCCA
CCGGAGTGTGGATTATTTTTGGCTAGAGTTGGAGGAGGGAGAGCGGGTGC
GAGGTGGGTGAAACGTGATTAGAAAGGCCCGCTGGGGGGGGGGAGGGGTT
CAGTTTTTTTGGTAGGGGGGGCATTCGGTCTTTTCTTCCGTATCTTTTGG
GAAAGTTTCGGACGTGGGTTGACGGGGGGAAACGTCTCTTCCTTGCCTTG
TCGGAAGCGGCACGAATGCTGTTGAATAGGCTGAGCGGTCGTGGGGCGTT
GAAAAGACGGTCATCGCGTGTTAGTCGCGCGCCACCCTTTCAGTCGCTTG
AGACGATGAAAGGCGGTGTTTGACCTTCCCTCATTCCCTCCTTCCCTCCC
TCCTTCGCTTCCTACCTCCCTCATTCCTTCCAGTTAACCTCCGGCCCGGT
GTAGAGGCCTTCCTGCAGCGCCTGAGCGACGAGTACAACGTCTTTGTGTT
CACAGCCGCCACAGAGACCTATGCTCGACCAGTGTTGGACCGGTTAGACC
CCACCGGTTCCCTGTTGGACGGCCGCTTCTACCGACCCGCCTGTCGGCAT
GTGCACGGCACGTATCTGAAGGACTTAAGGAGGATTCAAGCGGGCTTGGG
GAAGGCGGATTTGTCCCGGGTGGTGCTGGTGGACAACAACCCCTTGTCCT
TCGTGCCTCAGCCCGAGAACGGCATCCTCGTCCCCTCCTTCTACGACGAC
GCCGAGGATCGAACCCTGGAGGCAGTGGGTGAGATGATCGACCGGCGCTT
AGCCCCCTTGGACGACGTCCGTCCCTTTTTGGGCGACTTGTTTCAATTGC
GCGCTCAGCTCCAGCTGGTCCGACGCCGCCTGTTGGGAGCGGAGGAGCGG
AAAGAGGCCGGGGAGGAGGCTGGGGGGGAGGCTGGGGAGGGGCAGTGGCA
AGGCCAGGAGAAGAGCGGATGATCACGCAAAGCCGTGGTGCGGGAAGGGC
TTGTCCGAGGAGCGTGCAGCATGTACATAGCATTTGAGCATCTAAATAAG
CCACTGGTGACTTGATCAGGGGCAGGGGGAAAAACCTTGCAGCACAGAGA
GGCACGTCCCTGCATCTTGCAAGGGCGTGGGTTTTGTAACGGCCTAAGAA
AAGAATTGCCATGTCAATTT back to topCoding sequence (CDS) from alignment at KK037255.1:79240..81559- >rna9658 ID=rna9658|Name=rna9658|organism=Nannochloropsis gaditana|type=CDS|length=3411bp|location=Sequence derived from alignment at KK037255.1:79240..81559- (Nannochloropsis gaditana)
TTAACCTCCGGCCCGGTGTAGAGGCCTTCCTGCAGCGCCTGAGCGACGAG
TACAACGTCTTTGTGTTCACAGCCGCCACAGAGACCTATGCTCGACCAGT
GTTGGACCGGTTAGACCCCACCGGTTCCCTGTTGGACGGCCGCTTCTACC
GACCCGCCTGTCGGCATGTGCACGGCACGTATCTGAAGGACTTAAGGAGG
ATTCAAGCGGGCTTGGGGAAGGCGGATTTGTCCCGGGTGGTGCTGGTGGA
CAACAACCCCTTGTCCTTCGTGCCTCAGCCCGAGAACGGCATCCTCGTCC
CCTCCTTCTACGACGACGCCGAGGATCGAACCCTGGAGGCAGTGGGTGAG
ATGATCGACCGGCGCTTAGCCCCCTTGGACGACGTCCGTCCCTTTTTGGG
CGACTTGTTTCAATTGCGCGCTCAGCTCCAGCTGGTCCGACGCCGCCTGT
TGGGAGCGGAGGAGCGGAAAGAGGCCGGGGAGGAGGCTGGGGGGGAGGCT
GGGGAGGGGCAGTGGCAAGGCCAGGAGAAGAGCGGATGAGACATGGACGA
ATGCCTGCTCCACAGCCGTTTCGAGGAGGACATGCGGGACGAACGGGGCC
GGGAGCTGGCCCATCAACTTCTTCCCAACGGTGACTCGGAGTCTTTCCAC
TACCAGCACCAGGCGGATGTAGGGGAGGCCTTGGGAGACGTTCGCCACCG
GAGTGTGGATTATTTTTGGCTAGAGTTGGAGGAGGGAGAGCGGGTGCGAG
ATGCGTTCAAGTCTCGCCCTATGTGCGGTGGGCATGGTGGGCCGGCCGGG
GCAAGGGATGGCAAGCACCAGAAGAGCAGCACTTGGGAAGGCAGTTGCCT
CGCGCGACCTGTCCGGAGTCATTTTCAGCAAGTGGAGTCGCTTGTTCCAC
GCTCAAAGCTTTGGCTACGTGGGTGGCATGACGAAGGCCGTGAAGGCCGG
AAGTAGCAGCCTGGTAAACAGCACAGGAAAACGACCGCCGGCCCTGGAGG
CCTCGCGCACGTGCACAGCTCGACACGGTGGACGGTCCCTTGTGTGTGGT
AGCAGATACGGAGATGCCAAGTGGATGCAGGGGCAGGGACGGAGATTCTC
CGTCTACAGGAAGCGAGAGAAGTTGACGGTGGTGCTGTTAACCTCCGGCC
CGGTGTAGAGGCCTTCCTGCAGCGCCTGAGCGACGAGTACAACGTCTTTG
TGTTCACAGCCGCCACAGAGACCTATGCTCGACCAGTGTTGGACCGGTTA
GACCCCACCGGTTCCCTGTTGGACGGCCGCTTCTACCGACCCGCCTGTCG
GCATGTGCACGGCACGTATCTGAAGGACTTAAGGAGGATTCAAGCGGGCT
TGGGGAAGGCGGATTTGTCCCGGGTGGTGCTGGTGGACAACAACCCCTTG
TCCTTCGTGCCTCAGCCCGAGAACGGCATCCTCGTCCCCTCCTTCTACGA
CGACGCCGAGGATCGAACCCTGGAGGCAGTGGGTGAGATGATCGACCGGC
GCTTAGCCCCCTTGGACGACGTCCGTCCCTTTTTGGGCGACTTGTTTCAA
TTGCGCGCTCAGCTCCAGCTGGTCCGACGCCGCCTGTTGGGAGCGGAGGA
GCGGAAAGAGGCCGGGGAGGAGGCTGGGGGGGAGGCTGGGGAGGGGCAGT
GGCAAGGCCAGGAGAAGAGCGGATGAGACATGGACGAATGCCTGCTCCAC
AGCCGTTTCGAGGAGGACATGCGGGACGAACGGGGCCGGGAGCTGGCCCA
TCAACTTCTTCCCAACGGTGACTCGGAGTCTTTCCACTACCAGCACCAGG
CGGATGTAGGGGAGGCCTTGGGAGACGTTCGCCACCGGAGTGTGGATTAT
TTTTGGCTAGAGTTGGAGGAGGGAGAGCGGGTGCGAGATGCGTTCAAGTC
TCGCCCTATGTGCGGTGGGCATGGTGGGCCGGCCGGGGCAAGGGATGGCA
AGCACCAGAAGAGCAGCACTTGGGAAGGCAGTTGCCTCGCGCGACCTGTC
CGGAGTCATTTTCAGCAAGTGGAGTCGCTTGTTCCACGCTCAAAGCTTTG
GCTACGTGGGTGGCATGACGAAGGCCGTGAAGGCCGGAAGTAGCAGCCTG
GTAAACAGCACAGGAAAACGACCGCCGGCCCTGGAGGCCTCGCGCACGTG
CACAGCTCGACACGGTGGACGGTCCCTTGTGTGTGGTAGCAGATACGGAG
ATGCCAAGTGGATGCAGGGGCAGGGACGGAGATTCTCCGTCTACAGGAAG
CGAGAGAAGTTGACGGTGGTGCTGTTAACCTCCGGCCCGGTGTAGAGGCC
TTCCTGCAGCGCCTGAGCGACGAGTACAACGTCTTTGTGTTCACAGCCGC
CACAGAGACCTATGCTCGACCAGTGTTGGACCGGTTAGACCCCACCGGTT
CCCTGTTGGACGGCCGCTTCTACCGACCCGCCTGTCGGCATGTGCACGGC
ACGTATCTGAAGGACTTAAGGAGGATTCAAGCGGGCTTGGGGAAGGCGGA
TTTGTCCCGGGTGGTGCTGGTGGACAACAACCCCTTGTCCTTCGTGCCTC
AGCCCGAGAACGGCATCCTCGTCCCCTCCTTCTACGACGACGCCGAGGAT
CGAACCCTGGAGGCAGTGGGTGAGATGATCGACCGGCGCTTAGCCCCCTT
GGACGACGTCCGTCCCTTTTTGGGCGACTTGTTTCAATTGCGCGCTCAGC
TCCAGCTGGTCCGACGCCGCCTGTTGGGAGCGGAGGAGCGGAAAGAGGCC
GGGGAGGAGGCTGGGGGGGAGGCTGGGGAGGGGCAGTGGCAAGGCCAGGA
GAAGAGCGGATGAGACATGGACGAATGCCTGCTCCACAGCCGTTTCGAGG
AGGACATGCGGGACGAACGGGGCCGGGAGCTGGCCCATCAACTTCTTCCC
AACGGTGACTCGGAGTCTTTCCACTACCAGCACCAGGCGGATGTAGGGGA
GGCCTTGGGAGACGTTCGCCACCGGAGTGTGGATTATTTTTGGCTAGAGT
TGGAGGAGGGAGAGCGGGTGCGAGATGCGTTCAAGTCTCGCCCTATGTGC
GGTGGGCATGGTGGGCCGGCCGGGGCAAGGGATGGCAAGCACCAGAAGAG
CAGCACTTGGGAAGGCAGTTGCCTCGCGCGACCTGTCCGGAGTCATTTTC
AGCAAGTGGAGTCGCTTGTTCCACGCTCAAAGCTTTGGCTACGTGGGTGG
CATGACGAAGGCCGTGAAGGCCGGAAGTAGCAGCCTGGTAAACAGCACAG
GAAAACGACCGCCGGCCCTGGAGGCCTCGCGCACGTGCACAGCTCGACAC
GGTGGACGGTCCCTTGTGTGTGGTAGCAGATACGGAGATGCCAAGTGGAT
GCAGGGGCAGGGACGGAGATTCTCCGTCTACAGGAAGCGAGAGAAGTTGA
CGGTGGTGCTG back to top
|