rna9651, rna9651 (mRNA) Nannochloropsis gaditana

Overview
Namerna9651
Unique Namerna9651
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1956
Alignment locationKK037255.1:62613..63273 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100221g10.4578.mrna
Orig protein idgnl|cribi|Naga_100221g10.4578
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:62613..63273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100221g10gene9371Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9651rna9651-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21054.1cds9620Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9651 ID=rna9651|Name=rna9651|organism=Nannochloropsis gaditana|type=mRNA|length=1956bp
ATGTTCGACGCAGGCCTTGCTGACGAGTTGGGTAAACGAGGAGACCCGTT
TTTAACCGCCGGAGCTCCCGGACCGCAACCTATTGAGAAAGAGATCCATT
ATGCATTTGCGCCTGAGCTGAGAACGGAATTGGGTGGTTGTAATCACAGA
TTCGCCGGCCATGGGAACGACACAGTCAGCAGCGGGGACCACGGCCGGGA
TGGTTCACGGAGTAAAGACATGGATGCTTTCCTTCTGGTGCCGATGCCTG
AGGACCAGATTCTTCCCGTTCCCCGGATTTCTCACGACTCCCGCCTCGAC
GATGGGAACAGCTCCTCGGCCTCTTCTCCCGCGCGTCCCGCTTCTATCCA
GATTTCCTCTTGTCCCCTGGTGCGGTTGCCACACTCTCCTGCCCTACCCC
CCTCCTTTCGTCTTGCCGCAGGACACGTCCTTCGTTCCGCGGTGACGTCT
CACGCCTACAGGATCATTCGAAGCCTCATTCCCGCCTCCTCCCATAGCCC
CTACCGACCTCCAACTGCCCTCTATCTTGCTACCCCCTTCCCGTCGAAAC
CTCTGTCCTTGGGGCCGAGACGAAGCGGGACATATCCCTCCTGCCAAACG
GGGGACCCGGACATGAGCCGCCTTTCGCAGTCGAAATGCGTGGTCATCAA
GGTAACAATCCACGGTCCCTCTTGGCCTCATTTCCTCCCTTCCGACCCGC
CACTCGGAGAGTTGGCAGCTGCTCACATACTAAGAAGTTACAGCCACGGC
CACAATGGCAATCCCAGCAGCCTTGGCCCTGGCCGAAGCACTGGGAGCTG
TCACGATCCATCCTCTTCCCATGTAATTCCACTCTTGGATGCGCTCGCTG
ACGACGACTGTGTGTACCTCGTCTACCCGTATGCCTCCGGTGGGGACCTC
TTTGACTTCGTGACCAAGTCGGAGGAAGGGTTGTCAGAAGAGACCGCGCG
GGCATTTTTCACCGACATGGTCGGGGGTTTACGGTACTTGAAATCCAAGG
GCTTGGCCCATGGGGATGTCAGCTTGGAGAACGTGGTGCTGTGGGAACAG
GAGGAAGCGGTGGAAGGAGGGAGCGCAGGGGGGGAGAAGGAAGAAGAAGG
GCGGCCGCGGAAACACCGCCCGGTCTGTCGTTTAACAGACTTGGAAATGG
CGCGAAGCCTTTCCAACGCTTCGGGCCCATCTGTGGCCCCCTTGGGAAGA
CGGACGGTCGGGGGAAAGAAAGGATACGTTGCGCCCGAATGTATATTTGG
CACCGTGGTGGACTGGGAAGCGGCGGATGTATGGAGCCTGGGCGTCTCTC
TGTACACCATGTTGACGCGCCATCCCCTCTACACGGACCCAGAGGATTCG
GGCTTTGAATTGCTCTGTCGAGGAGAAGCCCGGCGGATGATGGAATTTTA
CAGAGACGTGTACAGCTTGGAGATCTCGGAGGCTGCCGTGGACCTATTGG
CGTGGATGTTGGCGCCAAATCCAGCGGGACGACCGCGCCTGGAGGAAGTG
CTTGAGCATGCCTGGCTAGATGGAGAAGGGGGGGGGGCGCTTGGCTCGAC
CGAAGGAGGAGGATCCTCTGGAGCTATTAACGTTCATAGGGCGTGTGCGA
ACGAGGAGATGGATCCGCTATGGGAAGGAATGCTAGGTCGACGGCCGACG
GCGGACAAGGCTATGGAGGAGGCACACTTGGATGTTGTTTTGGAGAAAAC
TCTCACCGATGATACGATGGAAAAGACCCTCCCTGGCACGCCCTCCCTCA
CATGGGACTTGTCTTCTGCGTGGACGCCTGCGACCACCCCCGGCAGCATT
GGAAGCATTTACACTAGCAGCAGCAGGAGCAACAGCAGCAGTGACAACCA
TGGTTGCGAGAGTGATCACACTATCAGAAGCAAAGATGACGTGGCAAATA
ACATTTTTACACCTGTGTTAATTTCAAATTACGAAGAACTTGCCATGGGG
CAGTAG
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protein sequence of rna9651

>rna9651-protein ID=rna9651-protein|Name=rna9651|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MDTNIAINLRVTVAMYRAKAAVKTAPVAVMTPRQVGIKKWAIQKKMVKIG
VYGKITTELGRGSRCKALTKRLLLLFINRSFKRDKRDKTREGRDKSTERL
VLTCRIVSLVEHGSIIINHAQRSAKNHRLSYMCTSGTLRHNDACNAQASG
LAGENDWNMLGRSMLNTF
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mRNA from alignment at KK037255.1:62613..63273+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9651 ID=rna9651|Name=rna9651|organism=Nannochloropsis gaditana|type=mRNA|length=661bp|location=Sequence derived from alignment at KK037255.1:62613..63273+ (Nannochloropsis gaditana)
ATGGACACTAACATTGCCATTAATTTGAGGGTTACAGTAGCAATGTATCG
GGCAAAAGCAGCAGTCAAAACGGCACCAGTTGCGGTAATGACACCTAGAC
AGGTCGGGATCAAGAAGTGGGCGATACAAAAAAAGATGTATGATTTTTGA
ACTTTGCAGCTGCGTGGCGCGGGGTCGTGAGGATAGGGTAAAGATCGGTG
TCTACGGGAAAATAACAACAGAgctggggagagggagtcgaTGCAAGGCA
CTCACGAAACGGCTTCTGCTTTTATTTATCAACAGAAGCTTTAAAAGAGA
TAAAAGAGATAAGGTCGAGGTGGGGGGTTAATGTTTCAACGGTACACAGA
AtgagacaagggagggaagagataAATCTACGGAGAGACTTGTATTGACG
TGCCGAATCGTCTCGCTCGTGGAGCATGGCAGTATAATTATAAATCATGC
GCAGAGAAGTGCAAAGAACCATCGCCTCTCCTACATGTGCACGTAAATGA
ATGATGAACCTCGATACTCATGTTCGGGACGAAGATGAGAAAGTTAAGCT
ATTAGCAGTGGGACTCTGCGACACAATGACGCCTGCAATGCTCAGGCATC
AGGGCTTGCGGGGGAAAATGACTGGAACATGCTCGGCCGCTCTATGCTCA
ACACGTTCTGA
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Coding sequence (CDS) from alignment at KK037255.1:62613..63273+

>rna9651 ID=rna9651|Name=rna9651|organism=Nannochloropsis gaditana|type=CDS|length=2028bp|location=Sequence derived from alignment at KK037255.1:62613..63273+ (Nannochloropsis gaditana)
ATGGACACTAACATTGCCATTAATTTGAGGGTTACAGTAGCAATGTATCG
GGCAAAAGCAGCAGTCAAAACGGCACCAGTTGCGGTAATGACACCTAGAC
AGGTCGGGATCAAGAAGTGGGCGATACAAAAAAAGATGGTAAAGATCGGT
GTCTACGGGAAAATAACAACAGAgctggggagagggagtcgaTGCAAGGC
ACTCACGAAACGGCTTCTGCTTTTATTTATCAACAGAAGCTTTAAAAGAG
ATAAAAGAGATAAGacaagggagggaagagataAATCTACGGAGAGACTT
GTATTGACGTGCCGAATCGTCTCGCTCGTGGAGCATGGCAGTATAATTAT
AAATCATGCGCAGAGAAGTGCAAAGAACCATCGCCTCTCCTACATGTGCA
CCAGTGGGACTCTGCGACACAATGACGCCTGCAATGCTCAGGCATCAGGG
CTTGCGGGGGAAAATGACTGGAACATGCTCGGCCGCTCTATGCTCAACAC
GTTCTGAATGGACACTAACATTGCCATTAATTTGAGGGTTACAGTAGCAA
TGTATCGGGCAAAAGCAGCAGTCAAAACGGCACCAGTTGCGGTAATGACA
CCTAGACAGGTCGGGATCAAGAAGTGGGCGATACAAAAAAAGATGGTAAA
GATCGGTGTCTACGGGAAAATAACAACAGAgctggggagagggagtcgaT
GCAAGGCACTCACGAAACGGCTTCTGCTTTTATTTATCAACAGAAGCTTT
AAAAGAGATAAAAGAGATAAGacaagggagggaagagataAATCTACGGA
GAGACTTGTATTGACGTGCCGAATCGTCTCGCTCGTGGAGCATGGCAGTA
TAATTATAAATCATGCGCAGAGAAGTGCAAAGAACCATCGCCTCTCCTAC
ATGTGCACCAGTGGGACTCTGCGACACAATGACGCCTGCAATGCTCAGGC
ATCAGGGCTTGCGGGGGAAAATGACTGGAACATGCTCGGCCGCTCTATGC
TCAACACGTTCTGAATGGACACTAACATTGCCATTAATTTGAGGGTTACA
GTAGCAATGTATCGGGCAAAAGCAGCAGTCAAAACGGCACCAGTTGCGGT
AATGACACCTAGACAGGTCGGGATCAAGAAGTGGGCGATACAAAAAAAGA
TGGTAAAGATCGGTGTCTACGGGAAAATAACAACAGAgctggggagaggg
agtcgaTGCAAGGCACTCACGAAACGGCTTCTGCTTTTATTTATCAACAG
AAGCTTTAAAAGAGATAAAAGAGATAAGacaagggagggaagagataAAT
CTACGGAGAGACTTGTATTGACGTGCCGAATCGTCTCGCTCGTGGAGCAT
GGCAGTATAATTATAAATCATGCGCAGAGAAGTGCAAAGAACCATCGCCT
CTCCTACATGTGCACCAGTGGGACTCTGCGACACAATGACGCCTGCAATG
CTCAGGCATCAGGGCTTGCGGGGGAAAATGACTGGAACATGCTCGGCCGC
TCTATGCTCAACACGTTCTGAATGGACACTAACATTGCCATTAATTTGAG
GGTTACAGTAGCAATGTATCGGGCAAAAGCAGCAGTCAAAACGGCACCAG
TTGCGGTAATGACACCTAGACAGGTCGGGATCAAGAAGTGGGCGATACAA
AAAAAGATGGTAAAGATCGGTGTCTACGGGAAAATAACAACAGAgctggg
gagagggagtcgaTGCAAGGCACTCACGAAACGGCTTCTGCTTTTATTTA
TCAACAGAAGCTTTAAAAGAGATAAAAGAGATAAGacaagggagggaaga
gataAATCTACGGAGAGACTTGTATTGACGTGCCGAATCGTCTCGCTCGT
GGAGCATGGCAGTATAATTATAAATCATGCGCAGAGAAGTGCAAAGAACC
ATCGCCTCTCCTACATGTGCACCAGTGGGACTCTGCGACACAATGACGCC
TGCAATGCTCAGGCATCAGGGCTTGCGGGGGAAAATGACTGGAACATGCT
CGGCCGCTCTATGCTCAACACGTTCTGA
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Synonyms
Publications