rna9644, rna9644 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9644
Unique Name	rna9644
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2428
Alignment location	KK037255.1:44558..45587 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100654g3.6020.mrna
Orig protein id	gnl\|cribi\|Naga_100654g3.6020
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:44558..45587 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100654g3	gene9364	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9644	rna9644-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21062.1	cds9613	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:44558..45587+
coding sequence from alignment at KK037255.1:44558..45587+

mRNA sequence

>rna9644 ID=rna9644|Name=rna9644|organism=Nannochloropsis gaditana|type=mRNA|length=2428bp
GAGTTTTCTGGATTGAGTAGCAAGAGCACCAAACCCACGACCGAAGAAGA
CAATAACAGAGAATTTCCTCCCATAACAACAGGGAGAGTAGCTGCGCTCC
GTGCAGGGAGTGGCCGCGGACAATCAGCACACTACTAGTATTAGTAAACG
TGGGGGAAGGTCTTTGGTCGCAGGCGAGTCTCGCGTCCTGGCTTTTCCAC
AGGTTTCAAGCGTTCCTCTTCAGAGAGCCGAGGCATCACACAGCTTCCGA
ATCTTGTTGGTATTACCATCACACACAGACAGCGCTTTGGCTACCGCTTA
CATGCTGTGCCTTGCCACCCGCACAGACGACAGCGCGCCAAACCCATGCA
GCATCCATTTAGCGAGGACCATGACCATCACAGACATGGAAAAAATAAAA
AGTAAGCAGCACAAGCAACGCCAGCGCCTGCGGCGACGCGAAACCCTCAC
AACGTACTGCCATGACACAATATATCTCCTTATTACAACGCGGACGTAGG
CAACACCTCGCCACTTGACACCCTCCTTGTGGTGGGCACAGGGTCGAGCA
GAAACGCGGAATGATCATGACGATGTGACTAGTGGAAAGGAAGGAGGGCA
GCATGGGGGGTTGGACAAGGGAAAGAAGGAGAAAGGAGGTTGGAACAAGA
AGCGAAATGAAGGCGGGGAAGCAGGCGCAGCTCTTGCGTGTGCCGCCACA
ACCTCTACCGCGACTACTGATACCGTCGGGACCACCGAGAAAGGCAATCG
GGCTCACAATCATGCCCCCCTTTCATTTCTGACCCCCATGCTTTCTTGCC
CTCCTATGCCATGTTGGCCTCGGCGGCCGACTACAGCCAACACCATGCGG
AGGACAGGCTCACGAAGCACCTGCTGGAATTGGACCGGCAGCAAGCGGCG
CGGGAGCAAGCCCCGGGCTATTCGGTTTATCTCACACATCTTAGCCCTTT
CAGCTTCAGCGAGAAGAATATTGTGCATGTGGGCTTGCCCCAGAAGTGGA
AAGGGGGAGGGGAGGGGAGGTGGGGGAGGCTTGTGACGTTTCCGCACGAC
AATTTGCCGCGGCTGGGTCAGGAGGCAGCGGAGAGAAAGGAGGAGAGGAT
AAAGGAATTGGAGACAAAGAAGGAGGGGAAGCAACAGCAGTGGGGATGCA
AGGGGGGGGGCTGGAGCTGGAGGGAGTTAGGCATCGAGCCTTGCGAGTAG
AGCGGCGACGACCACGAGGAGAACAGGCACCGCTGATACCACAAGCAGTA
GCATACTCTTTTAGCGTTTCTCCAGCTGCAAGAGCAGTTCGGTGTAGCTA
CCGTGATCGCACGCGGCAACCGTCCTGCCGTTGCTCGGCCTTTTTCTTCT
CCTTATCTTGAGGCTGGTGCCAGCATTCACGGTGCTGATGCAGGGTATGT
CGGTAGCGAAGCAGTAGAGAAGTTAGAATTAGCCAGTGATACTTGCACAC
AGACAGGGAGCGATACGAGTGCGGACGTAGGCTTGTTTTGCCGGCTGCAT
AACCCCGAGGTCATGGCTCGGGCACGGATGGCTGCCTCTGGTTGCAAAGG
GATACAGAGGGTGGTCTGAACATGCAAGGCGGCGGAGAGGAGACAGCACC
AAGTAGAGTGCAACGTGTTGATGGTGAAAGAAGTGTTGTAAAGATTGAAA
GAGGAGCAAAGAAAGCATGCGATGTAATCAGCGGTCGCGCTTGCTCGCAG
CGCCGGTGACAGCTGTTTCCTTCCTTTATTACGGTCTGCGGCTTGGGATC
GCCATACGAGATGCTTGCGCTTACAGGAGCCTCGGGCCTATCGAGTTGCT
GCGGCGCGCGTGAACCTCGCCGCACATCTCTATCACCGAGTGGGTCGCCC
TCCGTTTCACCCGGCACCAGGGCCGAGCCATCATCGCCGGCGTCTCGTGC
TATATGCTCGCGCAGTCCCATCCCTCCTTCGACCAAGACCTGCCCCGGCC
CATCCCCTTCTTCATGCACGGCGGGGGCTTCGTCTCCCGCGGCCATTCCG
TCGTGGGTGCGCATGCCGGATGCCTTGGCATCTGCATGAGCAAAGTGTGA
GATTTGTTATCTTTGCTCGGTGATGAGGCAAAATAACGTCGAAATAAGCA
GGGAAAACCTCATATGATCTCTGTTATATTGCAGTACATGATAACTGCTG
TCATCAAAATTCGGTACGGTATCCAACTCAGACAAGAGAAGCTTGCATTC
CAAGTGACTCTTACAGTCCCCTCGACCCGCAGATGTAGAAATTCCGGACA
TGGAGCGTACAGATTTATAATTTCAAGTAATGGATGGTCATGGAAATAAT
AAAAAAAGCGACCCACTCGCCGTTTAACAATCACGAGTGTCTGAATGATG
AGGAATAAATAACCTATGGACCGTTTAACAATCACGAGTGTCTATATGAT
GAGGAATAAATAACATGTAAACCGTTTC

protein sequence of rna9644

>rna9644-protein ID=rna9644-protein|Name=rna9644|organism=Nannochloropsis gaditana|type=polypeptide|length=300bp
MLVVRQLSAGVRGRCGQRQGQQKGGRYLSGSTGSSNTNGEVYWGRQWEKA
KEAAPVMLSVIGFVVVISEGTRLQVEARTKLSMQETILRLEQETKQAEQE
INDAVLRREMAKKQAEQEKKDAVLRGELEKKDAVLRGEMEEKYAVLRGEL
EKKYAVLRGELEKDALRAGQVDGRILDLLTQGDYERARILLKERANGHVT
GGSVVVRVVCSLLSVTASISDIYRHDRDREKDVAGGGASRWSLFVMIGKE
GQHMTRKEGKMAVEDAVGLKYVHCELESKGKGPQRRLFCGKTRTATYIAK

mRNA from alignment at KK037255.1:44558..45587+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9644 ID=rna9644|Name=rna9644|organism=Nannochloropsis gaditana|type=mRNA|length=1030bp|location=Sequence derived from alignment at KK037255.1:44558..45587+ (Nannochloropsis gaditana)
ATGCTGGTGGTGCGGCAACTCTCGGCGGGTGTCCGAGGCAGATGCGGGCA
GAGGCAGGGGcagcagaagggagggcgctATCTATCGGGCAGCACAGGGA
GCAGCAACACAAATGGTGAAGTGTACTGGGGTCGGCAATGggagaaggca
aaggaggcagCCCCCGTCATGCTAAGTGTCATTGGCTTTGTTGTAGTGAT
TTCGGAAGGAACTCGGCTACAGGTGGAAGCGAGGACGAAATTGAGCATGC
AAGAGACGATATTGCgcctggagcaggagacGAAGCAGGCGGAGCAGGAG
ATTAATGATGCGGTGCTGCGAAGAGAGATGGCGAAGAAGCAggcggagca
ggagaagaaggatgcGGTGCTGAGAGGGGAGCTTGAAAAGAAGGATGCGG
TGCTGagaggagagatggaggagaagtaTGCGGTGCTGAGAGGGGAGCTT
GAAAAGAAGTATGCGGTGCTGAGAGGGGAGCTTGAAAAGGATGCATTGcg
ggcggggcaggtggaCGGACGGATTCTCGATCTCTTGACGCAGGGGGATT
ATGAGCGGGCTCGGATACTGTTGAAGGAGCGAGCAAACGGTCACGTGACT
GGtctgccctcttctcctcctgctcctcctcctcctacctaGGCGGCTCT
GTCGTGGTGAGGGTGGTCTGCAGCCTCCTTTCTGTCACTGCGTCCATATC
TGACATTTACCGACATGACAGAGACAGAGAGAAAGATGTTGCCGGGGGCG
GCGCATCGAGATGGAGCTTGTTTGTCATGATTGGCAAGGTAGGAGAAtag
atggaggaggatgggagagaaaagggataCGAAGCTAAAGAAGACTTGTG
CGTTGATACAATTCtaggtggaaggaggggcaacacatgacgaggaagga
ggggaaaatggcaGTGGAGGATGCGGTGGGGTTGAAGTATGTACATTGTG
AATTGGAAAGCAAGGGCAAGGGCCCGCAGCGAAGGCTTTTTTGTGGAAAG
ACACGAACAGCGACATACATAGCAAAATAA

Coding sequence (CDS) from alignment at KK037255.1:44558..45587+

>rna9644 ID=rna9644|Name=rna9644|organism=Nannochloropsis gaditana|type=CDS|length=2709bp|location=Sequence derived from alignment at KK037255.1:44558..45587+ (Nannochloropsis gaditana)
ATGCTGGTGGTGCGGCAACTCTCGGCGGGTGTCCGAGGCAGATGCGGGCA
GAGGCAGGGGcagcagaagggagggcgctATCTATCGGGCAGCACAGGGA
GCAGCAACACAAATGGTGAAGTGTACTGGGGTCGGCAATGggagaaggca
aaggaggcagCCCCCGTCATGCTAAGTGTCATTGGCTTTGTTGTAGTGAT
TTCGGAAGGAACTCGGCTACAGGTGGAAGCGAGGACGAAATTGAGCATGC
AAGAGACGATATTGCgcctggagcaggagacGAAGCAGGCGGAGCAGGAG
ATTAATGATGCGGTGCTGCGAAGAGAGATGGCGAAGAAGCAggcggagca
ggagaagaaggatgcGGTGCTGAGAGGGGAGCTTGAAAAGAAGGATGCGG
TGCTGagaggagagatggaggagaagtaTGCGGTGCTGAGAGGGGAGCTT
GAAAAGAAGTATGCGGTGCTGAGAGGGGAGCTTGAAAAGGATGCATTGcg
ggcggggcaggtggaCGGACGGATTCTCGATCTCTTGACGCAGGGGGATT
ATGAGCGGGCTCGGATACTGTTGAAGGAGCGAGCAAACGGTCACGTGACT
GGCGGCTCTGTCGTGGTGAGGGTGGTCTGCAGCCTCCTTTCTGTCACTGC
GTCCATATCTGACATTTACCGACATGACAGAGACAGAGAGAAAGATGTTG
CCGGGGGCGGCGCATCGAGATGGAGCTTGTTTGTCATGATTGGCAAGgag
gggcaacacatgacgaggaaggaggggaaaatggcaGTGGAGGATGCGGT
GGGGTTGAAGTATGTACATTGTGAATTGGAAAGCAAGGGCAAGGGCCCGC
AGCGAAGGCTTTTTTGTGGAAAGACACGAACAGCGACATACATAGCAAAA
TAAATGCTGGTGGTGCGGCAACTCTCGGCGGGTGTCCGAGGCAGATGCGG
GCAGAGGCAGGGGcagcagaagggagggcgctATCTATCGGGCAGCACAG
GGAGCAGCAACACAAATGGTGAAGTGTACTGGGGTCGGCAATGggagaag
gcaaaggaggcagCCCCCGTCATGCTAAGTGTCATTGGCTTTGTTGTAGT
GATTTCGGAAGGAACTCGGCTACAGGTGGAAGCGAGGACGAAATTGAGCA
TGCAAGAGACGATATTGCgcctggagcaggagacGAAGCAGGCGGAGCAG
GAGATTAATGATGCGGTGCTGCGAAGAGAGATGGCGAAGAAGCAggcgga
gcaggagaagaaggatgcGGTGCTGAGAGGGGAGCTTGAAAAGAAGGATG
CGGTGCTGagaggagagatggaggagaagtaTGCGGTGCTGAGAGGGGAG
CTTGAAAAGAAGTATGCGGTGCTGAGAGGGGAGCTTGAAAAGGATGCATT
GcgggcggggcaggtggaCGGACGGATTCTCGATCTCTTGACGCAGGGGG
ATTATGAGCGGGCTCGGATACTGTTGAAGGAGCGAGCAAACGGTCACGTG
ACTGGCGGCTCTGTCGTGGTGAGGGTGGTCTGCAGCCTCCTTTCTGTCAC
TGCGTCCATATCTGACATTTACCGACATGACAGAGACAGAGAGAAAGATG
TTGCCGGGGGCGGCGCATCGAGATGGAGCTTGTTTGTCATGATTGGCAAG
gaggggcaacacatgacgaggaaggaggggaaaatggcaGTGGAGGATGC
GGTGGGGTTGAAGTATGTACATTGTGAATTGGAAAGCAAGGGCAAGGGCC
CGCAGCGAAGGCTTTTTTGTGGAAAGACACGAACAGCGACATACATAGCA
AAATAAATGCTGGTGGTGCGGCAACTCTCGGCGGGTGTCCGAGGCAGATG
CGGGCAGAGGCAGGGGcagcagaagggagggcgctATCTATCGGGCAGCA
CAGGGAGCAGCAACACAAATGGTGAAGTGTACTGGGGTCGGCAATGggag
aaggcaaaggaggcagCCCCCGTCATGCTAAGTGTCATTGGCTTTGTTGT
AGTGATTTCGGAAGGAACTCGGCTACAGGTGGAAGCGAGGACGAAATTGA
GCATGCAAGAGACGATATTGCgcctggagcaggagacGAAGCAGGCGGAG
CAGGAGATTAATGATGCGGTGCTGCGAAGAGAGATGGCGAAGAAGCAggc
ggagcaggagaagaaggatgcGGTGCTGAGAGGGGAGCTTGAAAAGAAGG
ATGCGGTGCTGagaggagagatggaggagaagtaTGCGGTGCTGAGAGGG
GAGCTTGAAAAGAAGTATGCGGTGCTGAGAGGGGAGCTTGAAAAGGATGC
ATTGcgggcggggcaggtggaCGGACGGATTCTCGATCTCTTGACGCAGG
GGGATTATGAGCGGGCTCGGATACTGTTGAAGGAGCGAGCAAACGGTCAC
GTGACTGGCGGCTCTGTCGTGGTGAGGGTGGTCTGCAGCCTCCTTTCTGT
CACTGCGTCCATATCTGACATTTACCGACATGACAGAGACAGAGAGAAAG
ATGTTGCCGGGGGCGGCGCATCGAGATGGAGCTTGTTTGTCATGATTGGC
AAGgaggggcaacacatgacgaggaaggaggggaaaatggcaGTGGAGGA
TGCGGTGGGGTTGAAGTATGTACATTGTGAATTGGAAAGCAAGGGCAAGG
GCCCGCAGCGAAGGCTTTTTTGTGGAAAGACACGAACAGCGACATACATA
GCAAAATAA

Synonyms

Publications