rna9642, rna9642 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9642
Unique Name	rna9642
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1479
Alignment location	KK037255.1:40244..41292 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100654g1.6018.mrna
Orig protein id	gnl\|cribi\|Naga_100654g1.6018
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:40244..41292 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100654g1	gene9362	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21060.1	cds9611	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9642	rna9642-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:40244..41292-
coding sequence from alignment at KK037255.1:40244..41292-

mRNA sequence

>rna9642 ID=rna9642|Name=rna9642|organism=Nannochloropsis gaditana|type=mRNA|length=1479bp
CGAACTTTTTGATTTCTTGCCGGAAGCGCAGCCGCCGAGGCGGGGGTGCC
TATGCAGAATTCGAAATTCGTATGCCCACTTCCTTCTGCAACCTTTCAGT
GCACCTGGTGCCCTGCCTCGTTGTCCTCCTCCTCCTTCTCCTCCTCCCCT
TCCTCCCTCTCGTCTGTCCCTGCGCCTCGCCTCCCTCTCCCTTGAACCCT
CCGCATTCCCCTCCTCCTTCCTCCCGTTTTGTGTTCTCCCCCCATCGGCC
AAGCCCGGAGATCATCGCCGACTACCTCGCCGCCATCCCTCCCTCCCTCC
CTCCCTCCCTCACCCCCTTTCGCTACCGTACCCTGCACGCGGAGCCACCG
TACGCCTCCCTGGGGAAGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGCGGGTCCGGCTGGTGTCGATGGAAGTCTGCCTGGGGA
GGGGTCAAAAGACGTACGCAAAAGCGCGGGAAGCGCTCCGCGGGTGGAAA
ATGCACGCAAGGAGCCCGACGACGGGGATCGTGCGAGGGAGGGAGGGAGG
GAGGGAGGGCGGGCGGGAGGGAGGGAGGGTCGGCGTCGTGACCTTGGCCC
GCGTGTACGGAGGAGGGGCCTGGGTGATGAATCCCTGCTGCGTCGCTTAT
GAAAGCTTCGACAAGCAGGACCGGAACGGCGAGGGAGAGGGAGGGAGGAA
GGGGGGAAGGGAGGGAGGGAGGGAGGGAGGGGGGCCACGGGTGTGGTCGG
CGGTTGCCTACACGACCGTCGGACGGCATTTGATCGCGGGCGAGGAGAGG
ATGAGGGTGATATGGTATCCAAGAGGGAGGGGGAGGAAAGGCGGGAGGGA
AGGCGGGGGGGAGGACGAGGTCTGGTTCGAGATCGTGTCGGTGGCGCGGG
GAAACGGATGGGTGGGACGTCTTCTTTTCCCTTCGACACAGCGGATGCAG
CGGCATTTCTTTCAGGAGCAACTTAGAGGAATGCAATTTATGGTCAACAC
GTAGACAGGCAATATATGTATAGATATATGTACACATATATGTATAGATA
TATGTACACACATATGTGTTGTCAACACGTAGACATGCAGTATATTGTTG
TCGTGCAGGAAGGCAATGTATTGTCAACAACATATGTGTTGTCAACACGT
AGACATGCAGTATATTGTTGTCGTGCAGGAAGGCAATGTATTGTCAACAT
TATGTATGTCGCCCGCACAGGAGAAATGAAGTAAAGGAAGAGTAAGTAAC
CGTATCGGTAGGGCCGCAATGCGCATCGGAGACAGGCACTTTTATAACGG
GCCATACTTTTCCATCGTCCCGAGCAGACGACGATGAATTCGCACTGAGC
AAGGAGAAGTAAAGAAAAAGACCCAAAAAACAACCCAACCCAAAAAAAGA
CTTGTCAGGGTCTGGAACCCGCACGCCCAGGCATGCGAGCCTCTCACAGT
CATGTGTCTTTTTTCCAGAAGGAAGGTAG

protein sequence of rna9642

>rna9642-protein ID=rna9642-protein|Name=rna9642|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MFSRRLLSYPHFSSYFIPLSLSSLHQSAGLSACLRKDSHTFILVSRHQHH
HFHPIVPRPSLLISHINLLHLPGLFTSSADDPPPQLSMPPSQNPPHLRPI
LHTTLPGHAACPCSMSRLSL

mRNA from alignment at KK037255.1:40244..41292-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9642 ID=rna9642|Name=rna9642|organism=Nannochloropsis gaditana|type=mRNA|length=1049bp|location=Sequence derived from alignment at KK037255.1:40244..41292- (Nannochloropsis gaditana)
AGTTTTTCTTGGCATCCATTCCATTGTTTGGATACATACAGTGAACAGCT
CATTACTTGAAGCAAGCGGCGCTCAATCATAATGATTTGATGTTCTCTCG
GCGACTTCTTTCTTATCCTCATTTCTCTTCCTACTTCATTCCTCTGTCCC
TTTCTTCGCTACATCAGTCGGCAGGCTTGAGCGCATGCCTTCGTAAGGAT
TCTCACACCTTTATCCTTGTCTCTCGACATCAACACCACCATTTCCATCC
CATCGTCCCTCGACCCTCCCTCCTCATCAGCCACATCAACCTGCTCCATC
TGCCTGGCCTCTTTACCTCCTCCGCCGACGACCCTCCTCCTCAGCTTTCC
ATGCCGCCGTCACAAAATCCACCGCACCTGCGCCCTATCCTACATACGAC
ATTGCCTGGCCACGCGGCTTGTCCCTGTTCCATGTCCCGCCTTTCCCTTT
GACGGCTACTGCATGACCGATGCACAGGTCGGTCGGGGCTCCGGGCTTTT
TTTTTATTGGGGTCTTCTTTTAAATCAAGGTCTCGTCTGCCGTGCATGGG
CAGGACAATCGTGCGGAGGGCTTGATATTGTCGTCCTTGCACTCATGTGC
AGGATTGACCGTGCGTCATGTCCCTCTCCCATACCGCCTCGGGCCTGCCC
GTAGCGCTCCGTTCGCCGCGTCCTTCCCCTTCCTGAACGCCTGCATCCTC
CCTCCGTCTTTTCATCCTATCATCCTTCTTGGCGACAGGTGTACGGCTGT
TTGTCAAAAGAGGAGGAACAGCGGCAGTACGACCGGGTGAAGGAGGAAAA
ACGGGTGGCCTCGACCCCAGGCTTGGCCTTTTGCCCCACCCCCGGATGTG
GCACAGTGCTGGAGGTGGGGGAGGAGGGCGAGGAGGAGGAAGGGAAAGAG
GGAGGGGGACGGGAGGAGGAGGAGGAAGGGAGGAGGGACGTGGATGGGGA
GGTAGCTGAGGAGGGAGGGGAGGAGAGCGGGGTGGAGGGGCAGGAGGGGA
GGGGCCGAAAGAGGAAGGACCTTGGAGACAAGGGTCAAGGAGGGAGGGA

Coding sequence (CDS) from alignment at KK037255.1:40244..41292-

>rna9642 ID=rna9642|Name=rna9642|organism=Nannochloropsis gaditana|type=CDS|length=363bp|location=Sequence derived from alignment at KK037255.1:40244..41292- (Nannochloropsis gaditana)
ATGTTCTCTCGGCGACTTCTTTCTTATCCTCATTTCTCTTCCTACTTCAT
TCCTCTGTCCCTTTCTTCGCTACATCAGTCGGCAGGCTTGAGCGCATGCC
TTCGTAAGGATTCTCACACCTTTATCCTTGTCTCTCGACATCAACACCAC
CATTTCCATCCCATCGTCCCTCGACCCTCCCTCCTCATCAGCCACATCAA
CCTGCTCCATCTGCCTGGCCTCTTTACCTCCTCCGCCGACGACCCTCCTC
CTCAGCTTTCCATGCCGCCGTCACAAAATCCACCGCACCTGCGCCCTATC
CTACATACGACATTGCCTGGCCACGCGGCTTGTCCCTGTTCCATGTCCCG
CCTTTCCCTTTGA

Synonyms

Publications