rna964, rna964 (mRNA) Nannochloropsis gaditana

Overview
Namerna964
Unique Namerna964
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length915
Alignment locationCM002456.1:848197..849420 +

Link to JBrowse

Properties
Property NameValue
Productmitochondrial protein translocase family
Orig transcript idgnl|cribi|Naga_100124g12.8333.mrna
Orig protein idgnl|cribi|Naga_100124g12.8333
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:848197..849420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100124g12gene927Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna964rna964-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29712.1cds964Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna964 ID=rna964|Name=rna964|organism=Nannochloropsis gaditana|type=mRNA|length=915bp
ATGTGCACATCGACAGCAGTACCTTTGCGTGTGCCAAGGGTATTCTTCAT
CCTACCTACCTCCTACAGAGCACATCCTGCCTCGCCTATTTTGCACAAGT
GTGGACCATCGACTGACTACCAAATGGCACCATGCATCTCTTTGTCGTCC
TACTCCCATCTCAGTCCAGCCCGGCGATCGTCAGGACCGACTTTGAGTGG
GCGTTGGGCCAAGGCAGGCTGTCTACATGGTTCAAAGACAAGTCGTGAGG
CTCAAAGAACAAGACCGGGTGACACAAAAGCGAGGCCAAAGCCGTGGTTT
CCGTTCTTTGCGCTTATGGGAATCGAGTCTTCAATTTTAGGACCTTTTTT
GGACGACTTTCACGGCCGTACTGGCGTACTGCACTATAACGACCCCCTGA
GCGTTGATATCGGTCAATACCACGTTCTCGGCACCGCTGCATGGGTCCCT
CTCTTGTTCGGCCTGGCAGGCGTGATCATGAGCTTTCTGACCGTCGTAAT
GGACGAAGCCTTTCAGACACCTTGCAAGAAGTTGCAGCCCGCACCTCCAG
ACGTGCTGAAAGGCATCTCACTTTTTAGTTTCCAGTACTACATTTCCGGG
GTCCTGGCAGGTGTCTTTTTGGTGAATCCTGTGATCCTCAATGTTTCTCT
CCTGGGGCTCGCTGTTGTGTGCTATTTGCGTTTTGATCGGACATGGGCCG
GCCTGACAGTGGGTGTATTAACTAGTATATTCGGCCCCATCCTCGAGTTG
CTGCTCACAACATATACGGAGTTATATATTTATTCATCTCCTGACTTCTA
TAGTGTGCCATCCTGGATTCCATGGGTGTATTTATGCGGTGGTCCTGCTG
TGTGTAACCTGGCACGGGCGCAGTGGCAGGCCTTGCAGGATTCCACCTCA
GGTCATGAGGCGTGA
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protein sequence of rna964

>rna964-protein ID=rna964-protein|Name=rna964|organism=Nannochloropsis gaditana|type=polypeptide|length=355bp
MSFFRAGKRCAASFGARALPPTMIVGLAVTAEYYNQGLQNYSTTLCDAAV
VNNEDTSIEVPALVKQAEEERRKVAQLKNPGSFEKLIEDGKRLSSVDSFE
GFRLEVQKMVTPHFYLAHSFMLGVKLPQVDTNALYDFSTHVVLPGNQLIM
ARMGHAGSMDGRIHFGLGENTLVKVIASLQPNAAKDTYQVDAERHGRDHS
LTFRLSKGPQLYASYLQSITPGLALGGDTLFDFAEGGGVFSLGGKYTGPD
WVGVAMLAQYGQICLLQYIKHVSPGRMALVADLVLNPLTLDSQTVLGAEV
NMKQSRFLTTVDNGGKIAALLEARVVPNAVTLLLSGEVDGVKDEYKFGYG
FQLNL
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mRNA from alignment at CM002456.1:848197..849420+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna964 ID=rna964|Name=rna964|organism=Nannochloropsis gaditana|type=mRNA|length=1224bp|location=Sequence derived from alignment at CM002456.1:848197..849420+ (Nannochloropsis gaditana)
ATGTCCTTTTTTCGTGCTGGGAAACGGTGTGCGGCGTCTTTCGGTGCCCG
GGCCCTGCCACCGACCATGATAGTGGGTCTGGCGGTGACGGCAGAGTACT
ACAATCAAGGGCTGCAGAACTATTCCACAACGTTATGCGATGCCGCCGTT
GTAAACAACGAAGACACGTCTATTGAAGTACCAGCTTTGGTGAagcaggc
agaggaggaaagacggaaGGTGGCGCAGCTCAAAAATCCGGGGTCTTTTG
AAAAACTGATAGAGGATGGCAAGAGATTATCTTCGGTAGACAGCTTCGAG
GGATTTCGTCTGGAAGTGCAAAAGATGGTTACGCCACATTTTTACTTAGC
ACATTCATTCATGTTGGGCGTAAAGCTTCCGCAAGTGGATACCAACGCGC
TTTACGATTTCTCGACGCATGTCGTATTGCCAGGTAATCAGCTCATCATG
GCACGGATGGGCCACGCGGGATCAATGGACGGCAGGTGCGTGCAAAGGTC
GAATGTTTGGTATTTTTGGTAGGCAGTGGCTGACATTGGGAGGATTGGGC
GGGGAACCTGGGGCTCTCACCAGGCACTTCCTCAGATGCTTCTTTTTTAA
TTTACACTTTCCTGCACGGATCGTTCATCACAATATCACAGAATCCACTT
TGGTCTGGGCGAAAACACTCTGGTTAAAGTGATAGCGAGCCTGCAGCCCA
ATGCCGCTAAAGACACCTATCAGGTTGACGCGGAGCGCCACGGCAGGGAT
CACTCCTTGACCTTTCGCCTGTCCAAGGGGCCACAGCTGTACGCATCCTA
CCTCCAGAGCATCACGCCGGGCCTCGCGTTGGGCGGGGACACTTTGTTCG
ATTTcgcagagggtggaggggtctTCAGCCTCGGCGGCAAGTACACGGGC
CCCGACTGGGTGGGCGTTGCGATGCTGGCCCAGTACGGTCAGATCTGTCT
CCTCCAGTACATCAAGCACGTGAGCCCCGGCCGCATGGCCTTAGTGGCTG
ATCTTGTGCTGAATCCTCTCACGCTTGACAGCCAGACCGTGCTCGGTGCG
GAAGTCAACATGAAACAGTCGCGCTTCCTGACCACCGTTGACAACGGTGG
CAAGatcgccgccctcctcgaggCGCGCGTCGTGCCCAATGCGGTCACCC
TCCTGCTCTCCGGCGAAGTGGATGGCGTGAAAGACGAATACAAGTTTGGG
TACGGCTTCCAATTGAACTTGTAA
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Coding sequence (CDS) from alignment at CM002456.1:848197..849420+

>rna964 ID=rna964|Name=rna964|organism=Nannochloropsis gaditana|type=CDS|length=2136bp|location=Sequence derived from alignment at CM002456.1:848197..849420+ (Nannochloropsis gaditana)
ATGTCCTTTTTTCGTGCTGGGAAACGGTGTGCGGCGTCTTTCGGTGCCCG
GGCCCTGCCACCGACCATGATAGTGGGTCTGGCGGTGACGGCAGAGTACT
ACAATCAAGGGCTGCAGAACTATTCCACAACGTTATGCGATGCCGCCGTT
GTAAACAACGAAGACACGTCTATTGAAGTACCAGCTTTGGTGAagcaggc
agaggaggaaagacggaaGGTGGCGCAGCTCAAAAATCCGGGGTCTTTTG
AAAAACTGATAGAGGATGGCAAGAGATTATCTTCGGTAGACAGCTTCGAG
GGATTTCGTCTGGAAGTGCAAAAGATGGTTACGCCACATTTTTACTTAGC
ACATTCATTCATGTTGGGCGTAAAGCTTCCGCAAGTGGATACCAACGCGC
TTTACGATTTCTCGACGCATGTCGTATTGCCAGGTAATCAGCTCATCATG
GCACGGATGGGCCACGCGGGATCAATGGACGGCAGAATCCACTTTGGTCT
GGGCGAAAACACTCTGGTTAAAGTGATAGCGAGCCTGCAGCCCAATGCCG
CTAAAGACACCTATCAGGTTGACGCGGAGCGCCACGGCAGGGATCACTCC
TTGACCTTTCGCCTGTCCAAGGGGCCACAGCTGTACGCATCCTACCTCCA
GAGCATCACGCCGGGCCTCGCGTTGGGCGGGGACACTTTGTTCGATTTcg
cagagggtggaggggtctTCAGCCTCGGCGGCAAGTACACGGGCCCCGAC
TGGGTGGGCGTTGCGATGCTGGCCCAGTACGGTCAGATCTGTCTCCTCCA
GTACATCAAGCACGTGAGCCCCGGCCGCATGGCCTTAGTGGCTGATCTTG
TGCTGAATCCTCTCACGCTTGACAGCCAGACCGTGCTCGGTGCGGAAGTC
AACATGAAACAGTCGCGCTTCCTGACCACCGTTGACAACGGTGGCAAGat
cgccgccctcctcgaggCGCGCGTCGTGCCCAATGCGGTCACCCTCCTGC
TCTCCGGCGAAGTGGATGGCGTGAAAGACGAATACAAGTTTGGGTACGGC
TTCCAATTGAACTTGTAAATGTCCTTTTTTCGTGCTGGGAAACGGTGTGC
GGCGTCTTTCGGTGCCCGGGCCCTGCCACCGACCATGATAGTGGGTCTGG
CGGTGACGGCAGAGTACTACAATCAAGGGCTGCAGAACTATTCCACAACG
TTATGCGATGCCGCCGTTGTAAACAACGAAGACACGTCTATTGAAGTACC
AGCTTTGGTGAagcaggcagaggaggaaagacggaaGGTGGCGCAGCTCA
AAAATCCGGGGTCTTTTGAAAAACTGATAGAGGATGGCAAGAGATTATCT
TCGGTAGACAGCTTCGAGGGATTTCGTCTGGAAGTGCAAAAGATGGTTAC
GCCACATTTTTACTTAGCACATTCATTCATGTTGGGCGTAAAGCTTCCGC
AAGTGGATACCAACGCGCTTTACGATTTCTCGACGCATGTCGTATTGCCA
GGTAATCAGCTCATCATGGCACGGATGGGCCACGCGGGATCAATGGACGG
CAGAATCCACTTTGGTCTGGGCGAAAACACTCTGGTTAAAGTGATAGCGA
GCCTGCAGCCCAATGCCGCTAAAGACACCTATCAGGTTGACGCGGAGCGC
CACGGCAGGGATCACTCCTTGACCTTTCGCCTGTCCAAGGGGCCACAGCT
GTACGCATCCTACCTCCAGAGCATCACGCCGGGCCTCGCGTTGGGCGGGG
ACACTTTGTTCGATTTcgcagagggtggaggggtctTCAGCCTCGGCGGC
AAGTACACGGGCCCCGACTGGGTGGGCGTTGCGATGCTGGCCCAGTACGG
TCAGATCTGTCTCCTCCAGTACATCAAGCACGTGAGCCCCGGCCGCATGG
CCTTAGTGGCTGATCTTGTGCTGAATCCTCTCACGCTTGACAGCCAGACC
GTGCTCGGTGCGGAAGTCAACATGAAACAGTCGCGCTTCCTGACCACCGT
TGACAACGGTGGCAAGatcgccgccctcctcgaggCGCGCGTCGTGCCCA
ATGCGGTCACCCTCCTGCTCTCCGGCGAAGTGGATGGCGTGAAAGACGAA
TACAAGTTTGGGTACGGCTTCCAATTGAACTTGTAA
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Synonyms
Publications