rna9633, rna9633 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9633
Unique Name	rna9633
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1837
Alignment location	KK037255.1:22421..23299 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101249g2.5512.mrna
Orig protein id	gnl\|cribi\|Naga_101249g2.5512
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:22421..23299 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101249g2	gene9352	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9633	rna9633-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21071.1	cds9602	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:22421..23299-
coding sequence from alignment at KK037255.1:22421..23299-

mRNA sequence

>rna9633 ID=rna9633|Name=rna9633|organism=Nannochloropsis gaditana|type=mRNA|length=1837bp
GCGTCCTTTATGCAATCTTGCAGGACCATCAAAGGAGACATTCCGTGCGG
AGCGCGCCGTTACACAGCCCTAAGCCGTCGAGGCCAAGCTTCAAACTAAT
TTGCCGTTTCGAGCAGTGGCCAGCTCTATCAAATTTTGCACTTGCTACTT
CTATGACACCAGCTTGTACTTTTGCATGTGAGGCGGTAGTGCATTTCTAC
TTGAGTCTTTCAAATTAATGCTTTCGCGGTTAACGGCTGACTTGAAGTTT
GTGATGGAATGTGCACCCTCACCTATCGCATGTATGTTGAATTAGTGTGG
TATATCAAGGTCCACGCTATTTCGCTTCTTCACGAGAATCAAAGTTCACG
ACACTGAGATCCTTCTACGCTTAAAGTACTATATGGCAGGCTCTGGTTAG
GTGCGCCTTCACTGAGCATAGCATGACTCACGCCGCAGATTTTCTTCACT
TCCCGCATTCAGGCCCAGGCCCAGAATGCCTCGTAAGAAACGCGAGTTTC
ATTCATCAACAATCCTCCTTCGTCTTTTGTTCGTTCAGTCTCTTGTTTTA
TTTTTAGAGTCTGCCAGCTGTGTAACTCTTTCATCGCCAACACCTGAGGG
CATCATGTCATCGCGCTTGCCCAAGCGCCCGTGCATCTTTTATTTTGGAA
GTAGCCGGGTGGCGAGTCAACACCACAAGCACCGACACCTTGGTTTGATA
CCTCCACCTTCATTCTGCTTCTGCACCTCCTCGCTCCCCGTGGTTGCCTC
CTTACCCTTGCCACGGCACAAACGCACTGCATTCCCCTCTTTATGGCCGA
TGCCCAGGAGACGTGTTATCCCCAAATTTCGTCATTTCTCCTCCTCCTCC
GCCTCCTCTTCCTCCTTTTCCTCCTCTTCCTCCTCGTCTCAGCCCCTGTC
CCCTTCCACTCCATCCTCCACACCCTCCACCCACCCCGCGGCCACGCCAT
CCACCTACACATGTTCCGCCACAAGCCCCGAAGAAATGGAGAGGATCGGG
GAAGGACTGTGGGAAGCGGGCTTGGCTGTGGGCCACACGGTTTTTTTGTA
CGGGGATCTGGGCACAGGCAAGACGACGCTGGCTCGAGGGTTCATCCAGG
CTGCGACAGCGGGCGCGGAAGCAGGAAGGGGGGAGGGAGGGAAGGAGGTA
ATGGTCACGTCGCCCTCCTACTTGCTCGACAATGTCTACCAAGCGTTCGA
TGCCGAGACGGGGGACTCGTTTCCCGTCCACCACATGGATTTATACCGCC
TGTCTACGGAAACGCACGATTTAAAAATTCTGGGAATACCGGCCGTGCTA
GTGGAAGGTCTTTGCCTCATTGAATGGCCTGATCGGCTTGGCATTCATAC
GCCATCCACCCGTGTCGAAATTTGGCTGTTGGCCCAGAACGAAGGAACAC
GGACGATCACAGTGAAAGCAGTGGGCGGGGGCTGGGCCCAAGAAGTAGTT
GACAGGTTGGGAGAAGTGTTAAATGAATGACAACTGCGATGAACTAAGAT
TTGCGGTATGTAAGATTACAAACGGATGCACGCTCAGTTTAACATAACTA
AGCTGGGTGATATATTCCTCGAATTGTAACTTTTCTTTTTCTTTTGACGA
GGGCATACCTGTGGACATGTCCGATCGCAATTTCATGACTTCAAACCTAC
CAACACAAGTAAGACAATCTAGATCTTTCCCAAGTGATGCAACCATTATT
ACTACCTTGCCAAGCATCTTATTTCTCGACGACAAAAGCTAACTACAATT
AAAATTATGTTTTGCAAAATTTTTGTTCTGTTTTCGTGTGCTGGCTTCAT
GCAACACGGGGCTAAGGCAATCTTTTTTCTTTTTGTG

protein sequence of rna9633

>rna9633-protein ID=rna9633-protein|Name=rna9633|organism=Nannochloropsis gaditana|type=polypeptide|length=144bp
MATGSPTYHDFLPTPPTPDQSRSSLLPSSDQVHYGFVYCKKIRASTATQS
ALFFPTIFRLFAPAWRAALLFPSYGEGGRRGSGSRACGRSTGGACGRSTG
GSSSCRSASGRSPARAGTGGSGSRRGWFRFSDVRDHGAREGVER

mRNA from alignment at KK037255.1:22421..23299-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9633 ID=rna9633|Name=rna9633|organism=Nannochloropsis gaditana|type=mRNA|length=879bp|location=Sequence derived from alignment at KK037255.1:22421..23299- (Nannochloropsis gaditana)
AGCACTTCGTCATGACATCGCGGTACATGACATCGAGATATTCCTAAGGA
TAACTCTGATTTATCTGATACCTGGTTGACTGAGCAGGCAAAAAGAATGT
AAGTCGTCGCTGTAATGGCCACCGGCAGCCCGACTTATCACGACTTCCTC
CCGACCCCCCCAACCCCAGATCAAAGCCGCTCAAGTCTGTTACCGTCGTC
AGACCAAGTCCATTATGGCTTCGTCTACTGTAAAAAGATTCGTGCGTCGA
CAGCAACGCAGTCGGCGCTCTTTTTTCCAACGATCTTCCGCCTGTTTGCT
CCTGCTTGGCGGTACGCACACTTCCCGGTCCTTCCTCCGTGCTCGTTCAT
GTCAGATTCCATGACGACTTATTGCCCTCTCAATTTTATATTTCATCTAT
GTCCAGTGCTGCTCTTCTTTTTCCCTCTTATGGTGAGGGCGGAAGGAGAG
GCAGTGGCTCCCGCGCCTGCGGAAGGTCAACAGGCGGCGCCTGTGGAAGG
TCAACAGGCGGCTCCAGCTCCTGCCGAAGCGCCTCAGGTAGGTTGAAGAG
CCTCAAGAAGGGGAAGGACCTGTCCTGTTGGGACGAAGGCCTTGAGAGCA
GGGAGATGCAGGCAGGGTGGCGGGGAACGCAAAACACTGCTGTCGACCGC
GACGGGCGCTTTCCCCTCGAGTCCCCACCCGCCCCCGAAACCCTGGACCT
TACTTCCTTCCCTTCTCTTCTCCTTACCTTTTCCCCCGCCCATGCTCCTC
GCCTTCCAGGCAGAAGCCCCGCAAGAGCCGGGACAGGCGGCTCCGGAAGC
CGTCGAGGCTGGTTCAGATTCAGCGACGTCCGTGATCATGGAGCTCGAGA
AGGCGTTGAACGGTAAGTCTTTTATCCCC

Coding sequence (CDS) from alignment at KK037255.1:22421..23299-

>rna9633 ID=rna9633|Name=rna9633|organism=Nannochloropsis gaditana|type=CDS|length=1305bp|location=Sequence derived from alignment at KK037255.1:22421..23299- (Nannochloropsis gaditana)
GCAGAAGCCCCGCAAGAGCCGGGACAGGCGGCTCCGGAAGCCGTCGAGGC
TGGTTCAGATTCAGCGACGTCCGTGATCATGGAGCTCGAGAAGGCGTTGA
ACGGTAATGCTGCTCTTCTTTTTCCCTCTTATGGTGAGGGCGGAAGGAGA
GGCAGTGGCTCCCGCGCCTGCGGAAGGTCAACAGGCGGCGCCTGTGGAAG
GTCAACAGGCGGCTCCAGCTCCTGCCGAAGCGCCTCAGATGGCCACCGGC
AGCCCGACTTATCACGACTTCCTCCCGACCCCCCCAACCCCAGATCAAAG
CCGCTCAAGTCTGTTACCGTCGTCAGACCAAGTCCATTATGGCTTCGTCT
ACTGTAAAAAGATTCGTGCGTCGACAGCAACGCAGTCGGCGCTCTTTTTT
CCAACGATCTTCCGCCTGTTTGCTCCTGCTTGGCGGCAGAAGCCCCGCAA
GAGCCGGGACAGGCGGCTCCGGAAGCCGTCGAGGCTGGTTCAGATTCAGC
GACGTCCGTGATCATGGAGCTCGAGAAGGCGTTGAACGGTAATGCTGCTC
TTCTTTTTCCCTCTTATGGTGAGGGCGGAAGGAGAGGCAGTGGCTCCCGC
GCCTGCGGAAGGTCAACAGGCGGCGCCTGTGGAAGGTCAACAGGCGGCTC
CAGCTCCTGCCGAAGCGCCTCAGATGGCCACCGGCAGCCCGACTTATCAC
GACTTCCTCCCGACCCCCCCAACCCCAGATCAAAGCCGCTCAAGTCTGTT
ACCGTCGTCAGACCAAGTCCATTATGGCTTCGTCTACTGTAAAAAGATTC
GTGCGTCGACAGCAACGCAGTCGGCGCTCTTTTTTCCAACGATCTTCCGC
CTGTTTGCTCCTGCTTGGCGGCAGAAGCCCCGCAAGAGCCGGGACAGGCG
GCTCCGGAAGCCGTCGAGGCTGGTTCAGATTCAGCGACGTCCGTGATCAT
GGAGCTCGAGAAGGCGTTGAACGGTAATGCTGCTCTTCTTTTTCCCTCTT
ATGGTGAGGGCGGAAGGAGAGGCAGTGGCTCCCGCGCCTGCGGAAGGTCA
ACAGGCGGCGCCTGTGGAAGGTCAACAGGCGGCTCCAGCTCCTGCCGAAG
CGCCTCAGATGGCCACCGGCAGCCCGACTTATCACGACTTCCTCCCGACC
CCCCCAACCCCAGATCAAAGCCGCTCAAGTCTGTTACCGTCGTCAGACCA
AGTCCATTATGGCTTCGTCTACTGTAAAAAGATTCGTGCGTCGACAGCAA
CGCAGTCGGCGCTCTTTTTTCCAACGATCTTCCGCCTGTTTGCTCCTGCT
TGGCG

Synonyms

Publications