rna9620, rna9620 (mRNA) Nannochloropsis gaditana

Overview
Namerna9620
Unique Namerna9620
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1188
Alignment locationKK037254.1:298446..299655 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101504g1.3535.mrna
Orig protein idgnl|cribi|Naga_101504g1.3535
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:298446..299655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101504g1gene9339Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9620rna9620-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21083.1cds9589Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9620 ID=rna9620|Name=rna9620|organism=Nannochloropsis gaditana|type=mRNA|length=1188bp
ACCAGAAATGACCCGCCCCCTCACTCATTGCAACCACCTATCAAATTGTT
CCACTACCGCCTTGCTGAAGCGAGCGATTTCATTGCTTGGTGAGTGGCAC
GGCAGAGGGGGCCCCTCCAGGTTCTGCCGCACTCATTTCTCGCAGGCATA
CAGGGCAAAGCGTCACCAATATGGGAAACAAACCTTACAAGACCGGCTTG
AAATCTGAGCCGTGCTCCACCACCGCCGCGACAGTCACTGCCTCCGCCCC
CGCCCCGCCCTCCGCCAACACTGGATGCCACAGCGGCAGTAAACCACCAG
CTGGGAAACTGATACAAGCCCCCATGCCTTTAAGTGAGGCAAAGCGATGG
TTCGTCTGCCGTGCTCCCCGCCCTGAGGCGAAATACCGCATGCTCTGTCT
GGCGTGGGCGGGCGGAAACTCCAGTATCTATAGGACGTGGGACCTCGGGA
GCGAGGTGGAGGTGGTGGCGGTGGAGCTTCCAGGCCGCAACGCCCGGGTG
AAAGAGACGCCCCTGAAGAACTTCCACTTGCTCGTTTCACGCCTGCTTCA
CGCCATGGAGGTGGTCGGCTACCTACCCTCCTCCGCCCCTTCCTTCCTCC
CTTCCTCCACCTCGCCCCCGCCCCTCAAACCACTCCTCCTCTTCGGTCAC
TCCTTCGGCGCCATGCTCGTCACCCACCTCGCCCAGGCACTGCGAGAGAG
GCGCGAGGATGAGGGAAAAAGCGTGGACGTGCCCCTGGTCCTAGTCTCGG
GGATGGCCCCTCTCGACAAACGAGGGGGCTCGACGGGTGTCTCGGCCATG
AGCGATGACGCCATGATCCAATACCTCGTCAAGATGGGAGGGATCCCCTC
CGAGGTGGCCGCTAGCCGGGAGCTCATGAACGTCTTCCTCCCCGCCTTTC
GAGGCGACTACACCGCCATCGATAACTACGTATATACCCCCCTTCCCGCC
CTTCCTTTCCGGCTGGTTGCATTCGCGGGGGAAAATGACGCCCGGGCCAG
CAAAGAAATCATGGAGGGATGGGTGAAGATGACGACACACGAGAAAGATT
TTGCCGTGGACGTCTTCCCAGGCGGACATTTTTTCATCAAAGAGCACACG
AGCATGGTGCTGGAGAGGATAGGGCAGAGGGTGCGTTTGATAAAATGACG
AGGAGAGCGTCGAAACAAAAAAAAGATGAACTCGTATA
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protein sequence of rna9620

>rna9620-protein ID=rna9620-protein|Name=rna9620|organism=Nannochloropsis gaditana|type=polypeptide|length=140bp
SSLSLSLSLGGHRKSQHVIKKPVLTAPSPPPSSPPSHASSPPSSSTGFRA
LLEAVLWGEGEREDAKEGGKEGGTEGGTEGGPRFTLPDGRDLVAGVKVAS
KVAWEMLSSTLCALLLHLLRRLPFVPEPIGRQHWGRWERE
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mRNA from alignment at KK037254.1:298446..299655+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9620 ID=rna9620|Name=rna9620|organism=Nannochloropsis gaditana|type=mRNA|length=1210bp|location=Sequence derived from alignment at KK037254.1:298446..299655+ (Nannochloropsis gaditana)
tcctccctctccctctccctctccctcggtgGGCACCGGAAATCCCAGCA
CGTCATCAAGAAGCCCGTCTTgaccgctccctctccccctccctcttccc
ctccctcccacgcctcctcccctccttcctcctcgaccggcTTCCGAGCC
CTCTTAGAGGCGGTCCtctggggagagggggagagggaggacgcgaagga
gggcgggaaggagggcgggacggagggcgggacggagggcgggccccGCT
TCACTCTGCCGGACGGACGAGACCTCGTCGCGGGGGTGAAGGTGGCGAGT
AAGGTGGCCTGGGAGATGCTATCTTCCACCCTctgtgccctcctcctcca
cctcctgcgcCGCCTTCCCTTTGTCCCCGAGCCCATCGGCCGCCAGCATT
GGGGGagatgggagagggagtagggggaaagggaggaagggagggaggga
gggaggggaggggggggagatagGATAGATAGAAAGACTGACATGAGCAC
ATTGAGCACAAAGCAGGCAATTTTGAAGGAAGACGTTGTTGTggataggg
aggggggttgtgCAGAAGAGATGTAGGGATATTTGTgtagaggcggtgga
gagggagggcagggtaGACAGACTTGGAGTGGTagcgggcggaaggggga
aaaggagtcCGGAGATAGAGAGCGTCTTGGAGTAGAGATCGTGGGGtgtg
gaaggaaggcaggggctaggaggagggggagggcagcgtGGCGGCCCTCG
GACGCCTCTGTGACGGGGTGGGGGGTGTCGcggggcagagaggaaggagg
aagaagagggtaGGGAACAGGAAAGGCAGCTCCTGGGAGCGCACTCCACG
TCCGCGTCGATGTGGTTTTCCTCCCCACATGACAAGCGACGAGGTGGATG
GCTATATGTATGGTATGACCCAGAGGTTGGAGACGGGTACCGCAGGAGCT
GAGCTtcagggcggggcggtgaaTCGCAGTCATACtcagagggagggcgg
agggcccaTACGCAAAGGAGCTCCTAGTCTTTCGAGTGGTGGCGAGcaca
gggaaaggagggatgatgtTGGCATTGCGCGGACGGGGAAGATCGTCGAT
GTGGATACAAAATAGCCGAAGAATGCGGGGCTCCTCTTTGGGATCATCGA
GTCAGTTGTCGCTCTAGATTGCGTTCAAGTTTGCCCGGCGTGTAACTTGC
TCCACACACC
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Coding sequence (CDS) from alignment at KK037254.1:298446..299655+

>rna9620 ID=rna9620|Name=rna9620|organism=Nannochloropsis gaditana|type=CDS|length=423bp|location=Sequence derived from alignment at KK037254.1:298446..299655+ (Nannochloropsis gaditana)
tcctccctctccctctccctctccctcggtgGGCACCGGAAATCCCAGCA
CGTCATCAAGAAGCCCGTCTTgaccgctccctctccccctccctcttccc
ctccctcccacgcctcctcccctccttcctcctcgaccggcTTCCGAGCC
CTCTTAGAGGCGGTCCtctggggagagggggagagggaggacgcgaagga
gggcgggaaggagggcgggacggagggcgggacggagggcgggccccGCT
TCACTCTGCCGGACGGACGAGACCTCGTCGCGGGGGTGAAGGTGGCGAGT
AAGGTGGCCTGGGAGATGCTATCTTCCACCCTctgtgccctcctcctcca
cctcctgcgcCGCCTTCCCTTTGTCCCCGAGCCCATCGGCCGCCAGCATT
GGGGGagatgggagagggagtag
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Synonyms
Publications