rna9618, rna9618 (mRNA) Nannochloropsis gaditana

Overview
Namerna9618
Unique Namerna9618
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length324
Alignment locationKK037254.1:293579..293957 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100884g1.4129.mrna
Orig protein idgnl|cribi|Naga_100884g1.4129
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:293579..293957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100884g1gene9337Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9618rna9618-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21086.1cds9587Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9618 ID=rna9618|Name=rna9618|organism=Nannochloropsis gaditana|type=mRNA|length=324bp
ATGGTCCTCTTCGAGGGCTCTTGGCTGCCCTCCCAGGTCCAAAACCTGGT
GGCGCGTCAATCCTCCGACACTCCCTACCTCTTCTACTGTATCAACCCCA
ACAACAACTACCATCTCCTCACTTCCTTCTCCCTCCTTCCCTCTCTCCCT
CCCTCCAGCCAAATATTGGAACTCGCTGATCAAAATCCGCTTCCGCATGC
CCAAGATCCCCTACTCCCTGTACGCTCCTTTGAAGGTGGCCGACGAGGAG
GCCTACGACATGCGCTACTTCTCCCTCATGACCTCGGACTCGGTCTTGCC
CCAACCAACCATTGCCTCCGTTGA
back to top

protein sequence of rna9618

>rna9618-protein ID=rna9618-protein|Name=rna9618|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MTVLRTSLALVGSALMLSHTNAAGSYLRTATTNANNAINDVLDAASSFYG
TSEQETVVTGEEQHQQGGHGV
back to top

mRNA from alignment at KK037254.1:293579..293957-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9618 ID=rna9618|Name=rna9618|organism=Nannochloropsis gaditana|type=mRNA|length=379bp|location=Sequence derived from alignment at KK037254.1:293579..293957- (Nannochloropsis gaditana)
ATGACCGTACTACGGACAAGCCTTGCACTTGTGGGAAGTGCCCTCATGCT
CAGGTGCGTTCGTCTCGTGGTGTCCGTAAAGATCATTATCGATGGTATGC
CTCTTCCTTGTCCTCGTCCCCCTCACCCATGCCCCTCCCCATTCACACCA
GCCACACAAACGCCGCCGGCAGCTACCTCCGCACAGCCACCACCAACGCT
AACAACGCCATTAACGACGTGCTGGATGCGGCAAGCAGCTTTTACGGGAC
CAGTGAGCAGGAAACGGTGGTGACGGGGGAGGAGCAACATCAGCAAGGTA
TCTGGTACGGACCGGAGGCCCTCCTCCCCTACCGCGTCGTGGACGCCGGG
GCGAACAAAAAGGCGGCCACGGAGTATGA
back to top

Coding sequence (CDS) from alignment at KK037254.1:293579..293957-

>rna9618 ID=rna9618|Name=rna9618|organism=Nannochloropsis gaditana|type=CDS|length=648bp|location=Sequence derived from alignment at KK037254.1:293579..293957- (Nannochloropsis gaditana)
GCGGCCACGGAGTATGACCACACAAACGCCGCCGGCAGCTACCTCCGCAC
AGCCACCACCAACGCTAACAACGCCATTAACGACGTGCTGGATGCGGCAA
GCAGCTTTTACGGGACCAGTGAGCAGGAAACGGTGGTGACGGGGGAGGAG
CAACATCAGCAAGATGACCGTACTACGGACAAGCCTTGCACTTGTGGGAA
GTGCCCTCATGCTCAGGCGGCCACGGAGTATGACCACACAAACGCCGCCG
GCAGCTACCTCCGCACAGCCACCACCAACGCTAACAACGCCATTAACGAC
GTGCTGGATGCGGCAAGCAGCTTTTACGGGACCAGTGAGCAGGAAACGGT
GGTGACGGGGGAGGAGCAACATCAGCAAGATGACCGTACTACGGACAAGC
CTTGCACTTGTGGGAAGTGCCCTCATGCTCAGGCGGCCACGGAGTATGAC
CACACAAACGCCGCCGGCAGCTACCTCCGCACAGCCACCACCAACGCTAA
CAACGCCATTAACGACGTGCTGGATGCGGCAAGCAGCTTTTACGGGACCA
GTGAGCAGGAAACGGTGGTGACGGGGGAGGAGCAACATCAGCAAGATGAC
CGTACTACGGACAAGCCTTGCACTTGTGGGAAGTGCCCTCATGCTCAG
back to top
Synonyms
Publications