rna9612, rna9612 (mRNA) Nannochloropsis gaditana

Overview
Namerna9612
Unique Namerna9612
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1434
Alignment locationKK037254.1:282120..283941 +

Link to JBrowse

Properties
Property NameValue
ProductDNA damage inducible protein
Orig transcript idgnl|cribi|Naga_100776g1.10776.mrna
Orig protein idgnl|cribi|Naga_100776g1.10776
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:282120..283941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100776g1gene9330Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9612rna9612-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21095.1cds9581Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9612 ID=rna9612|Name=rna9612|organism=Nannochloropsis gaditana|type=mRNA|length=1434bp
ATGGCACGAATCTCTCGCTGCTCGGGCGCGGGAGTTAGCGGCCGACGAGG
CCTCCGAATCAACGATTCGCCATTCCCATTCTCTTTCTCCCTTTTGAAAT
CCACCCTTCGAGTAGAGGAAGCGATTACCATCGAGGGTCGCCATGAGTCT
TTAGCGGACTTCCTGGTGCACCATCCCGCGGAGGAAGTTACCAGTTATTT
CACTGAGATAGTTGCCATGCTTGAACATCGCGGGATCGCCGCTGGCAAAG
CTTGTGAACGACGTTTCTTCTTTCCCTCCCATTCTCCCCCCCCTCCTCGC
TTAGAAAACTACCACCTCGTGCTTAAGCACGCGGAGGACACATCAATGCG
GGAGAATGAAAAAGAATACCACCTCAGTGAGAGGCGTCGGGCCGAAAGCA
AAAGAGAGGCGGGTCAGCGAGGGGTAAGAAGGAGACGCGAGGGGAGCCTA
GGGTCTGGGGGTATGCGAGAGGACGGGCGCGGGGAAGATTATCGGAGAAG
GGTCTACCGACCGAGTGGAGCGTCTCCTCGGAGCGATGGCTCGGTGGAGC
GGGGCAGCGAAGGCAAGGAGAGACGCAACCCGATGCGGGAGGGGCGCGAC
CGAAGATGGCGAGAGGAGGGGATGGAGAGCTCCAGGGGAGAGGAAGTACA
AGTCCGGGGGAGGAGACAGCGGCGCGACGGACGGGACAGTCGGAGCAGGA
GTCGGAATCGGGCAAAGACGTGGCAGCTGAGAGAAGGCGGTCGCGAAAGG
GGGGGTCGGGGTGGGACCGGGCGTGGGAGGAGCCAACGTCGTCGCTGCGG
TCGTTCCAGCTCTCGATCACGCTCCAGGTCTCTCTCCCCTGAATGCCGCT
CCTGCGCCCATTCTCTATCCCCCCCATCACCTGCCCCCTGTCCCTTCCCC
GCCGCCACCCCCACCGGCCCCCCGAAGAAAGCCTCCTGGGCCATTGTGGT
GTACCACGGAGGGAGCGCGCGCAAGGACTTTTCTGGGCCCTTGGCGGCGT
CTAGCTGCATGTCTTGCGATTTAGGCACGAGCATGCAGATGGGTCTGACG
GGATCGGGAAGCGGGGGCCTCCCGGCCAAGGCCTCTCTCATCTACGAGGA
CGAACACATGCGATATTGGCACGATGCCAAGGGCCGGCCGCTCTTCGTGG
TGACGCCGCTTCGGCACGTGCACAATTTAAAGGAACTCACGGGCGCGGAA
ATGCACCGGTTGTGGAGCGGAGCCATGCAAATCCTCACGGACATGGGCTG
CGACCCGAAGCAGGACATGCGGGATATGATCCTGAATGCCGGAGTCGATA
GAAATCACGCCCACTTGCACCTCAAGGTCCGCGTGACAGGGAGTGGCTTT
GATCGGGCGCGCGCCAAGTGGAGTGAGCGAAGAAATCGCTTGGTGGATGC
CTTGAGAACTTTCGCTCGAAAGCAGTCCTGTTGA
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protein sequence of rna9612

>rna9612-protein ID=rna9612-protein|Name=rna9612|organism=Nannochloropsis gaditana|type=polypeptide|length=431bp
MAAITLTVADEEGNAASLQVSTQDTVEALKALVEIEMCVPSAQQVLLKDG
APLAPGARLGALGVADNDFLFLVRDNSNANISGMSGRDTSTSSATTATAT
ASADAGTGRANPASAVHSLKDLPAGLGPEQLMTTIKANGRLLAELQHHNA
PLAAAIATGDVVKVRSVQMKQKLEAVSRRVEEQEAIRALEANPMDPEAQR
KIESMIQRENVHRNMELAMEEMPEAFGSVVMLYVDVHVNGHPIKAFVDSG
AQSTIMSAACALRCGLSRLIDTRFAGIAKGVGTSKILGRIHMHTLKVGEA
HLPCTFTVLENDDVDFLFGLDMLKRHQCCIDLRRNLLVLGSAGKEVPFLA
EKDLPARARGHQEEGAEKGGEGGREGEGSVGEGREAGLEGQLIGLGFSRE
QARSGLRRTEGNVEEAAALLLAEFGEREGGS
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mRNA from alignment at KK037254.1:282120..283941+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9612 ID=rna9612|Name=rna9612|organism=Nannochloropsis gaditana|type=mRNA|length=1822bp|location=Sequence derived from alignment at KK037254.1:282120..283941+ (Nannochloropsis gaditana)
ATGGCAGCTATTACCCTTACTGTTgccgatgaggagggaaatgcaGCCTC TCTGCAGGTACGAAAGACCTCTCCGCCGTCGTTCTCAAAAATTTAAATAC CTCTGTAAAACCGggctcctccgcccacctcccgcgTGCCCTATCCGCGA TATACATGTTATAGGTGAGCACTCAGGATACTGTGGAGGCATTGAAGGCT CTTGTAGAGATCGAGATGTGTGTGCCCTCTGCGCAACAAGTCTTGCTGAA GGACGGGGCCCCCCTAGCTCCTGGTGCACGCCTCGGGGCGCTTGGCGTGG CCGACAACGACTTTCTCTTCCTGGTCCGCGACAATAGCAACGCGAATATT AGCGGCATGAGTGGTCGTGACACATCCACAAGCAGTGCCACCACAGCGAC AGCGACGGCCTCGGCCGACGCGGGCACTGGCAGGGCCAACCCTGCCAGTG CGGTCCACTCCTTGAAGGACCTTCCCGCGGGGTTGGGGCCCGAGCAGCTC ATGACCACCATCAAGGCCAACGGGCGCCTTCTGGCCGAGCTCCAGCACCA CAACGCTCCGTTGGCCGCGGCCATCGCGACGGGCGACGTGGTCAAGGTCC GGTCAGTGCAAATGAAGCAGAAGCTGGAGGCAGTCTCgcggcgggtggag gagcaggaggccatCCGGGCTTTGGAAGCGAACCCGATGGACCCCGAGGC CCAGCGGAAGATCGAGAGCATGATCCAGAGGGAAAATGTGCACCGGAACA TGGAgctggccatggaggagatgccggAGGCCTTCGGGTCGGTGGTGATG CTGTACGTGGATGTGCATGTGAACGGGTGAgtggtcggggaggagggaat gcgcGGGGGCCTCCGAGGAGCTGCCCAGGCGCCTGGCTAAAGAGACGCAG CTTCTTGACCCGCTTctccacctttccccccttctccttgcttctccacc tttcccccccaccgccctcccaggCACCCGATCAAGGCCTTCGTGGACTC CGGGGCACAGAGCACCATCATGTCCGCCGCCTGCGCGCTCCGATGTGGCT TGAGGTAAAGGAAGGGTTGATGAAGGACAGGGGATGCCCCTGAGGCAGCG TCTGTGGAAAGATGGGACCGTCCTTTTCATGGCCCTGTGGGACGCGctcg tccctttccccctcccatgcAGCCGTCTCATCGACACTCGCTTCGCGGGC ATCGCCAAGGGCGTTGGCACGTCCAAGATCCTGGGTCGTATCCACATGCA CACACTTAAGGTGGGTGAAAGCTGACGActgcctccctttcgtcccctct ccccactTCATGGGCTCTCACTCACCCGGTGGCTCACTCACGCATACCCG CTCGCTTCGATGAAGTGACTTTCCGGActcagcctccctccctccctccc tccctccctcccaggtcggggaggcccacctcccctgcACCTTCACGGTG CTCGAAAACGACGACGTGGACTTTCTCTTCGGGCTGGACATGCTCAAGCG CCACCAGTGTTGCATCGACCTCCGCCGCAACCTCTTGGTCTTGGGGAGCG CGGGGAAAGAGGTGCCGTTCCTCGCCGAGAAGGATCTCCCGGCCCGCGCC CGTGgccaccaggaggaaggcgccgagaaagggggggagggagggaggga gggcgaagggtcggtcggggaaggaagagaggcaggCCTGGAGGGCCAGC TGATAGGTCTGGGCTTCTCGCGGGAGCAGGCGCGAAGCGGACTGCggcgg acggagggaaacgtggaggaggcagctgcCTTGCTCTTGGCTGAGTtcgg ggagcgggaggggggaagctAG
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Coding sequence (CDS) from alignment at KK037254.1:282120..283941+

>rna9612 ID=rna9612|Name=rna9612|organism=Nannochloropsis gaditana|type=CDS|length=6480bp|location=Sequence derived from alignment at KK037254.1:282120..283941+ (Nannochloropsis gaditana)
ATGGCAGCTATTACCCTTACTGTTgccgatgaggagggaaatgcaGCCTC
TCTGCAGGTGAGCACTCAGGATACTGTGGAGGCATTGAAGGCTCTTGTAG
AGATCGAGATGTGTGTGCCCTCTGCGCAACAAGTCTTGCTGAAGGACGGG
GCCCCCCTAGCTCCTGGTGCACGCCTCGGGGCGCTTGGCGTGGCCGACAA
CGACTTTCTCTTCCTGGTCCGCGACAATAGCAACGCGAATATTAGCGGCA
TGAGTGGTCGTGACACATCCACAAGCAGTGCCACCACAGCGACAGCGACG
GCCTCGGCCGACGCGGGCACTGGCAGGGCCAACCCTGCCAGTGCGGTCCA
CTCCTTGAAGGACCTTCCCGCGGGGTTGGGGCCCGAGCAGCTCATGACCA
CCATCAAGGCCAACGGGCGCCTTCTGGCCGAGCTCCAGCACCACAACGCT
CCGTTGGCCGCGGCCATCGCGACGGGCGACGTGGTCAAGGTCCGGTCAGT
GCAAATGAAGCAGAAGCTGGAGGCAGTCTCgcggcgggtggaggagcagg
aggccatCCGGGCTTTGGAAGCGAACCCGATGGACCCCGAGGCCCAGCGG
AAGATCGAGAGCATGATCCAGAGGGAAAATGTGCACCGGAACATGGAgct
ggccatggaggagatgccggAGGCCTTCGGGTCGGTGGTGATGCTGTACG
TGGATGTGCATGTGAACGGgCACCCGATCAAGGCCTTCGTGGACTCCGGG
GCACAGAGCACCATCATGTCCGCCGCCTGCGCGCTCCGATGTGGCTTGAG
CCGTCTCATCGACACTCGCTTCGCGGGCATCGCCAAGGGCGTTGGCACGT
CCAAGATCCTGGGTCGTATCCACATGCACACACTTAAGgtcggggaggcc
cacctcccctgcACCTTCACGGTGCTCGAAAACGACGACGTGGACTTTCT
CTTCGGGCTGGACATGCTCAAGCGCCACCAGTGTTGCATCGACCTCCGCC
GCAACCTCTTGGTCTTGGGGAGCGCGGGGAAAGAGGTGCCGTTCCTCGCC
GAGAAGGATCTCCCGGCCCGCGCCCGTGgccaccaggaggaaggcgccga
gaaagggggggagggagggagggagggcgaagggtcggtcggggaaggaa
gagaggcaggCCTGGAGGGCCAGCTGATAGGTCTGGGCTTCTCGCGGGAG
CAGGCGCGAAGCGGACTGCggcggacggagggaaacgtggaggaggcagc
tgcCTTGCTCTTGGCTGAGTtcggggagcgggaggggggaagctAGATGG
CAGCTATTACCCTTACTGTTgccgatgaggagggaaatgcaGCCTCTCTG
CAGGTGAGCACTCAGGATACTGTGGAGGCATTGAAGGCTCTTGTAGAGAT
CGAGATGTGTGTGCCCTCTGCGCAACAAGTCTTGCTGAAGGACGGGGCCC
CCCTAGCTCCTGGTGCACGCCTCGGGGCGCTTGGCGTGGCCGACAACGAC
TTTCTCTTCCTGGTCCGCGACAATAGCAACGCGAATATTAGCGGCATGAG
TGGTCGTGACACATCCACAAGCAGTGCCACCACAGCGACAGCGACGGCCT
CGGCCGACGCGGGCACTGGCAGGGCCAACCCTGCCAGTGCGGTCCACTCC
TTGAAGGACCTTCCCGCGGGGTTGGGGCCCGAGCAGCTCATGACCACCAT
CAAGGCCAACGGGCGCCTTCTGGCCGAGCTCCAGCACCACAACGCTCCGT
TGGCCGCGGCCATCGCGACGGGCGACGTGGTCAAGGTCCGGTCAGTGCAA
ATGAAGCAGAAGCTGGAGGCAGTCTCgcggcgggtggaggagcaggaggc
catCCGGGCTTTGGAAGCGAACCCGATGGACCCCGAGGCCCAGCGGAAGA
TCGAGAGCATGATCCAGAGGGAAAATGTGCACCGGAACATGGAgctggcc
atggaggagatgccggAGGCCTTCGGGTCGGTGGTGATGCTGTACGTGGA
TGTGCATGTGAACGGgCACCCGATCAAGGCCTTCGTGGACTCCGGGGCAC
AGAGCACCATCATGTCCGCCGCCTGCGCGCTCCGATGTGGCTTGAGCCGT
CTCATCGACACTCGCTTCGCGGGCATCGCCAAGGGCGTTGGCACGTCCAA
GATCCTGGGTCGTATCCACATGCACACACTTAAGgtcggggaggcccacc
tcccctgcACCTTCACGGTGCTCGAAAACGACGACGTGGACTTTCTCTTC
GGGCTGGACATGCTCAAGCGCCACCAGTGTTGCATCGACCTCCGCCGCAA
CCTCTTGGTCTTGGGGAGCGCGGGGAAAGAGGTGCCGTTCCTCGCCGAGA
AGGATCTCCCGGCCCGCGCCCGTGgccaccaggaggaaggcgccgagaaa
gggggggagggagggagggagggcgaagggtcggtcggggaaggaagaga
ggcaggCCTGGAGGGCCAGCTGATAGGTCTGGGCTTCTCGCGGGAGCAGG
CGCGAAGCGGACTGCggcggacggagggaaacgtggaggaggcagctgcC
TTGCTCTTGGCTGAGTtcggggagcgggaggggggaagctAGATGGCAGC
TATTACCCTTACTGTTgccgatgaggagggaaatgcaGCCTCTCTGCAGG
TGAGCACTCAGGATACTGTGGAGGCATTGAAGGCTCTTGTAGAGATCGAG
ATGTGTGTGCCCTCTGCGCAACAAGTCTTGCTGAAGGACGGGGCCCCCCT
AGCTCCTGGTGCACGCCTCGGGGCGCTTGGCGTGGCCGACAACGACTTTC
TCTTCCTGGTCCGCGACAATAGCAACGCGAATATTAGCGGCATGAGTGGT
CGTGACACATCCACAAGCAGTGCCACCACAGCGACAGCGACGGCCTCGGC
CGACGCGGGCACTGGCAGGGCCAACCCTGCCAGTGCGGTCCACTCCTTGA
AGGACCTTCCCGCGGGGTTGGGGCCCGAGCAGCTCATGACCACCATCAAG
GCCAACGGGCGCCTTCTGGCCGAGCTCCAGCACCACAACGCTCCGTTGGC
CGCGGCCATCGCGACGGGCGACGTGGTCAAGGTCCGGTCAGTGCAAATGA
AGCAGAAGCTGGAGGCAGTCTCgcggcgggtggaggagcaggaggccatC
CGGGCTTTGGAAGCGAACCCGATGGACCCCGAGGCCCAGCGGAAGATCGA
GAGCATGATCCAGAGGGAAAATGTGCACCGGAACATGGAgctggccatgg
aggagatgccggAGGCCTTCGGGTCGGTGGTGATGCTGTACGTGGATGTG
CATGTGAACGGgCACCCGATCAAGGCCTTCGTGGACTCCGGGGCACAGAG
CACCATCATGTCCGCCGCCTGCGCGCTCCGATGTGGCTTGAGCCGTCTCA
TCGACACTCGCTTCGCGGGCATCGCCAAGGGCGTTGGCACGTCCAAGATC
CTGGGTCGTATCCACATGCACACACTTAAGgtcggggaggcccacctccc
ctgcACCTTCACGGTGCTCGAAAACGACGACGTGGACTTTCTCTTCGGGC
TGGACATGCTCAAGCGCCACCAGTGTTGCATCGACCTCCGCCGCAACCTC
TTGGTCTTGGGGAGCGCGGGGAAAGAGGTGCCGTTCCTCGCCGAGAAGGA
TCTCCCGGCCCGCGCCCGTGgccaccaggaggaaggcgccgagaaagggg
gggagggagggagggagggcgaagggtcggtcggggaaggaagagaggca
ggCCTGGAGGGCCAGCTGATAGGTCTGGGCTTCTCGCGGGAGCAGGCGCG
AAGCGGACTGCggcggacggagggaaacgtggaggaggcagctgcCTTGC
TCTTGGCTGAGTtcggggagcgggaggggggaagctAGATGGCAGCTATT
ACCCTTACTGTTgccgatgaggagggaaatgcaGCCTCTCTGCAGGTGAG
CACTCAGGATACTGTGGAGGCATTGAAGGCTCTTGTAGAGATCGAGATGT
GTGTGCCCTCTGCGCAACAAGTCTTGCTGAAGGACGGGGCCCCCCTAGCT
CCTGGTGCACGCCTCGGGGCGCTTGGCGTGGCCGACAACGACTTTCTCTT
CCTGGTCCGCGACAATAGCAACGCGAATATTAGCGGCATGAGTGGTCGTG
ACACATCCACAAGCAGTGCCACCACAGCGACAGCGACGGCCTCGGCCGAC
GCGGGCACTGGCAGGGCCAACCCTGCCAGTGCGGTCCACTCCTTGAAGGA
CCTTCCCGCGGGGTTGGGGCCCGAGCAGCTCATGACCACCATCAAGGCCA
ACGGGCGCCTTCTGGCCGAGCTCCAGCACCACAACGCTCCGTTGGCCGCG
GCCATCGCGACGGGCGACGTGGTCAAGGTCCGGTCAGTGCAAATGAAGCA
GAAGCTGGAGGCAGTCTCgcggcgggtggaggagcaggaggccatCCGGG
CTTTGGAAGCGAACCCGATGGACCCCGAGGCCCAGCGGAAGATCGAGAGC
ATGATCCAGAGGGAAAATGTGCACCGGAACATGGAgctggccatggagga
gatgccggAGGCCTTCGGGTCGGTGGTGATGCTGTACGTGGATGTGCATG
TGAACGGgCACCCGATCAAGGCCTTCGTGGACTCCGGGGCACAGAGCACC
ATCATGTCCGCCGCCTGCGCGCTCCGATGTGGCTTGAGCCGTCTCATCGA
CACTCGCTTCGCGGGCATCGCCAAGGGCGTTGGCACGTCCAAGATCCTGG
GTCGTATCCACATGCACACACTTAAGgtcggggaggcccacctcccctgc
ACCTTCACGGTGCTCGAAAACGACGACGTGGACTTTCTCTTCGGGCTGGA
CATGCTCAAGCGCCACCAGTGTTGCATCGACCTCCGCCGCAACCTCTTGG
TCTTGGGGAGCGCGGGGAAAGAGGTGCCGTTCCTCGCCGAGAAGGATCTC
CCGGCCCGCGCCCGTGgccaccaggaggaaggcgccgagaaaggggggga
gggagggagggagggcgaagggtcggtcggggaaggaagagaggcaggCC
TGGAGGGCCAGCTGATAGGTCTGGGCTTCTCGCGGGAGCAGGCGCGAAGC
GGACTGCggcggacggagggaaacgtggaggaggcagctgcCTTGCTCTT
GGCTGAGTtcggggagcgggaggggggaagctAGATGGCAGCTATTACCC
TTACTGTTgccgatgaggagggaaatgcaGCCTCTCTGCAGGTGAGCACT
CAGGATACTGTGGAGGCATTGAAGGCTCTTGTAGAGATCGAGATGTGTGT
GCCCTCTGCGCAACAAGTCTTGCTGAAGGACGGGGCCCCCCTAGCTCCTG
GTGCACGCCTCGGGGCGCTTGGCGTGGCCGACAACGACTTTCTCTTCCTG
GTCCGCGACAATAGCAACGCGAATATTAGCGGCATGAGTGGTCGTGACAC
ATCCACAAGCAGTGCCACCACAGCGACAGCGACGGCCTCGGCCGACGCGG
GCACTGGCAGGGCCAACCCTGCCAGTGCGGTCCACTCCTTGAAGGACCTT
CCCGCGGGGTTGGGGCCCGAGCAGCTCATGACCACCATCAAGGCCAACGG
GCGCCTTCTGGCCGAGCTCCAGCACCACAACGCTCCGTTGGCCGCGGCCA
TCGCGACGGGCGACGTGGTCAAGGTCCGGTCAGTGCAAATGAAGCAGAAG
CTGGAGGCAGTCTCgcggcgggtggaggagcaggaggccatCCGGGCTTT
GGAAGCGAACCCGATGGACCCCGAGGCCCAGCGGAAGATCGAGAGCATGA
TCCAGAGGGAAAATGTGCACCGGAACATGGAgctggccatggaggagatg
ccggAGGCCTTCGGGTCGGTGGTGATGCTGTACGTGGATGTGCATGTGAA
CGGgCACCCGATCAAGGCCTTCGTGGACTCCGGGGCACAGAGCACCATCA
TGTCCGCCGCCTGCGCGCTCCGATGTGGCTTGAGCCGTCTCATCGACACT
CGCTTCGCGGGCATCGCCAAGGGCGTTGGCACGTCCAAGATCCTGGGTCG
TATCCACATGCACACACTTAAGgtcggggaggcccacctcccctgcACCT
TCACGGTGCTCGAAAACGACGACGTGGACTTTCTCTTCGGGCTGGACATG
CTCAAGCGCCACCAGTGTTGCATCGACCTCCGCCGCAACCTCTTGGTCTT
GGGGAGCGCGGGGAAAGAGGTGCCGTTCCTCGCCGAGAAGGATCTCCCGG
CCCGCGCCCGTGgccaccaggaggaaggcgccgagaaagggggggaggga
gggagggagggcgaagggtcggtcggggaaggaagagaggcaggCCTGGA
GGGCCAGCTGATAGGTCTGGGCTTCTCGCGGGAGCAGGCGCGAAGCGGAC
TGCggcggacggagggaaacgtggaggaggcagctgcCTTGCTCTTGGCT
GAGTtcggggagcgggaggggggaagctAG
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Synonyms
Publications