rna960, rna960 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna960
Unique Name	rna960
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	465
Alignment location	CM002456.1:836000..839251 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100124g8.8338.mrna
Orig protein id	gnl\|cribi\|Naga_100124g8.8338
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:836000..839251 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100124g8	gene923	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29717.1	cds960	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna960	rna960-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:836000..839251-
coding sequence from alignment at CM002456.1:836000..839251-

mRNA sequence

>rna960 ID=rna960|Name=rna960|organism=Nannochloropsis gaditana|type=mRNA|length=465bp
ATGGGCAATTGCTTTGGTGGAGGGGGAGGCAGGGATACACGCCATGAAGG
CATTTTAAACCCAGTCGCAAGCGAGGATTTACTTGTCGCCCAATCGCCAC
TACCGAGCCCCCAGCACTTCAACCAAAAAACCTCAAATGAATCAAAACTT
GTGCCCACATTTGACGAAGGGCGCTTGAAAGAATTAAGCCAAGTCGTGCC
TTTGCGGGAGACGATGTTGGATTTTGTCAAGCATGGGAGATGTTTGTTGG
ACGATGTCGCAGATTCTTGCGCAGCGCCTGCGCAGAAAACTTGGGATAGA
ACAGCTAAAGGGGCTCATGCACTGAAAGGCGCCGCCAAAACTCCGCGTTT
GAAGATTTGGCAGAAGGGATTTCAAGGCGGGTGTGGTCATGACATTTTCA
TCAACTGTGTGGAGCTCCTGTACGAGACGCTCTTAAAAATCGATATGGAA
CGAGCCGCTGAGTGA

protein sequence of rna960

>rna960-protein ID=rna960-protein|Name=rna960|organism=Nannochloropsis gaditana|type=polypeptide|length=858bp
MSGGPPFRALVGGINGLATTHDNEVASCGKGLEISMLSSEAREIQGGGKT
AMQEDEGEPTAAALQSTTGRKMGDERTRLAGFIGNVTTQASQPSPSGLST
AEEDIQGRSGKPHPDEAGVREEEEQGVDSSGDGHDAETSRIGQHGSNELM
VGVREVRTQMLLENMLELQDLSLDYLVEFLAQDGVLEKFLSFIVQIDEEE
VEEEERCEGKEGDLASPSNARSSLTLAKERRRRLQRGDVLYEEDEIALSR
SYHAMLLLASAEPSVQLLKFLSKKITVITDAMFEVLSPRSRGCIHHACRV
MDYLLRSLTEPFLRHVGCNRGSVKRFLGPMVRNLAEPPVAELLMKILTAP
SPANQMGQYQISPVAKWRLFESLADWRFLIVLAGEVSISGGHPQQVSAAA
DFFIDLLDSLATDENGELLLQPIAHCPELLGGLFDRALDLNAPSLQRGDC
VRVLLALAGRSCEPEIPASSMALTHFQIPSGLASLPMVPNQFRSVHTLFR
STLATHLRDLCECLLREGGGGAASPGLGGPVAHPGHVVEAPFSYLRLSLV
NLLVEIVDPGADKGLKAKERQQSHRRARQQKEEARDVLERVPPALWRLLC
QWFFQYPFSNLYHGLFYRLVRCVLRSDDEEVQRILFSKCRLVSSLVDAYC
KAGGAMGNRGHVLNICNALRLQAGTQSPVTGWLRNYLKSHESWRRFEEPL
RDATETAFLHPGLGLRVPSAFEKREMAEMSTRETTGHSDLGHGLELMCGL
RLNDVDLAHDAIRETSRTVVKTEEVAMHASIDYGSPLAYFLGLGEEQEYQ
EDETQANLTSCKKKKKKKGKKRKGKGGVSRHAVEDFEDAIGPEQGYEEDS
GVDSTLDV

mRNA from alignment at CM002456.1:836000..839251-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna960 ID=rna960|Name=rna960|organism=Nannochloropsis gaditana|type=mRNA|length=3252bp|location=Sequence derived from alignment at CM002456.1:836000..839251- (Nannochloropsis gaditana)
CGGACGCGGTCGCCGACCAAATTTCTTGCTCGAGGGCAGCCGAGGTACTC
TTTATGGCACCGCAGTAACAGGCCACCAAGCTACACTCGTTAAAACTCAA
TGGTGAAAGGTCGTGAGCGTTGAACGAGTATTCTGTATATTATGAGCAAC
TCGTCGAGCAAGAGTCGCATTTTACGTCCCCTTCCCTCTCAAGCTTGGCG
CATATCTTATTCAATCGACCAGGGAGTAGCGGGTTCGCAACAAGGCAATG
AGTGGGGGGCCACCATTTCGTGCATTGGTTGGTGGAATTAACGGTCTAGC
TACAACGCATGACAATGAAGTAGCCAGCTGCGGAAAGGGGTTAGAGATAA
GCATGTTGAGTAGTGAAGCACGCGAGATACAAGGCGGAGGAAAAACTGCA
ATGCAGGAGGACGAAGGAGAGCCGACGGCAGCAGCTCTGCAATCAACCAC
TGGCAGGAAAATGGGTGATGAAAGGACACGTCTTGCTGGGTTCATTGGGA
ATGTGACAACACAGGCGTCGCAGCCCTCTCCTTCAGGTCTCTCGACTGCC
GAAGAGGATATACAAGGAAGATCGGGGAAGCCGCACCCGGACGAGGCAGG
GGTTCGAGAGGAAGAAGAACAGGGCGTCGACAGCAGCGGCGACGGCCATG
ACGCCGAGACAAGTAGAATCGGACAACATGGATCAAATGAGCTTATGGTA
GGTGTCCGTGAAGTGCGAACGCAGATGTTGCTCGAGAATATGCTGGAGTT
GCAGGACCTGAGTCTTGACTACCTAGTAGAATTCCTGGCTCAGGATGGAG
TGCTGGAAAAGTTTTTGAGCTTTATCGTTCAAATTGATGAGGAAGAAGTG
GAAGAGGAGGAGCGGTGTGAAGGAAAGGAGGGAGACCTGGCAAGCCCCAG
CAACGCGCGGAGCTCTCTGACACTTGCGAAGGAGCGACGACGGCGGCTTC
AAAGAGGGGACGTGTTGTATGAGGAAGACGAGATAGCGCTTTCTCGCTCT
TATCATGCTATGCTTTTACTGGCAAGCGCAGAACCCAGTGTACAGTTACT
CAAGTTCCTGTCTAAGAAGATCACAGTTATTACCGACGCTATGTTCGAAG
TTCTCAGCCCGCGGTCCCGTGGCTGCATCCATCACGCCTGTCGCGTGATG
GACTACCTGCTCCGCTCTCTCACAGAGCCATTCCTGCGTCACGTTGGGTG
TAACCGAGGCTCGGTAAAGCGGTTTTTGGGGCCGATGGTACGCAACCTTG
CCGAGCCCCCGGTGGCTGAACTCCTGATGAAGATCCTTACTGCCCCCTCG
CCAGCCAATCAAATGGGCCAATATCAGATTTCGCCCGTGGCCAAATGGCG
CCTTTTCGAGTCGTTAGCCGATTGGCGCTTTCTAATTGTACTCGCAGGAG
AAGTCTCGATATCAGGTGGCCACCCTCAACAAGTGTCAGCTGCTGCCGAC
TTCTTCATAGACTTGCTGGACAGCTTAGCAACGGATGAGAACGGAGAGCT
GCTCCTGCAGCCGATCGCGCATTGTCCTGAGCTGCTTGGGGGGCTTTTTG
ACCGAGCCCTTGATTTAAATGCGCCCTCTTTGCAGAGAGGAGATTGTGTG
CGCGTCCTGCTCGCTCTCGCGGGTCGGAGCTGCGAGCCCGAGATCCCTGC
AAGCAGCATGGCACTTACCCACTTTCAAATACCTTCGGGTCTCGCATCGC
TTCCGATGGTTCCCAATCAGTTTCGCTCAGTCCACACACTGTTCCGTAGT
ACACTTGCGACGCACTTGCGGGATCTCTGCGAGTGTTTGCTGAGGGAGGG
CGGTGGAGGCGCGGCATCGCCTGGCTTGGGAGGGCCGGTAGCGCATCCGG
GCCACGTGGTGGAGGCGCCCTTCTCCTACCTCCGCCTTTCGCTCGTGAAT
CTTCTGGTTGAGATTGTGGACCCGGGTGCAGATAAGGGCCTCAAGGCCAA
AGAGAGGCAGCAAAGCCATCGCAGGGCGCGTCAGCAGAAAGAGGAGGCCC
GCGACGTGCTCGAACGAGTCCCCCCGGCGCTTTGGCGGCTCCTGTGCCAG
TGGTTCTTTCAATACCCGTTCAGCAACCTGTACCATGGCCTTTTTTATCG
CTTGGTTCGCTGCGTTCTTAGGTCGGATGATGAAGAAGTACAACGGATTC
TCTTCAGCAAGTGTCGCCTCGTTTCTTCGCTTGTGGATGCATATTGCAAG
GCTGGAGGGGCGATGGGAAACCGTGGCCATGTACTCAATATTTGCAATGC
TCTTCGCCTCCAGGCAGGCACCCAATCTCCTGTGACGGGATGGCTGCGCA
ATTATCTCAAGTCTCATGAAAGTTGGCGCCGCTTTGAAGAGCCGCTGCGT
GATGCCACTGAGACAGCCTTTCTCCATCCCGGTCTTGGACTTCGGGTGCC
TTCCGCCTTCGAGAAGCGCGAGATGGCGGAGATGTCGACTAGGGAAACAA
CGGGGCATTCCGATCTCGGTCACGGTCTGGAACTTATGTGCGGTTTGCGA
TTGAACGATGTTGATCTGGCCCATGATGCCATTCGTGAAACCAGCAGGAC
TGTGGTGAAGACGGAGGAGGTAGCAATGCATGCCTCGATCGATTACGGGT
CCCCTTTGGCTTACTTTCTGGGCCTCGGGGAGGAACAAGAATATCAAGAA
GATGAAACTCAGGCAAATCTTACCAGCTGCAAAAAGAAGAAGAAGAAGAA
AGGCAAAAAGAGAAAAGGTAAAGGAGGAGTGTCACGACATGCGGTGGAGG
ACTTTGAGGACGCCATTGGGCCAGAACAAGGGTACGAGGAGGATTCAGGT
GTCGATAGCACATTGGATGTATGATGTAAACATAATTTAACTGTCTACAG
AGTGCGAGGTAGGCTTGATTAAGATAAAACACACGGTAAAGAGCTAAATA
GCTTACAGAAGAGTTTGTACGAGTTTGTAGAGGTGACGCAAAACACTGCT
GGATGAGAAGCATGTAAATGTCGCACATGTAAGTATGCCCCTGCCTGCAT
ACATCATTAAATGCATGTACAGGTCAGGGAAATGTTAATCGGAACGTCGA
TAGGTCTCTGCACTCCTGTAAGCTCATTTTTGAGCTTTTGAGGAGCGAGC
ATTGCGCGAGTAAAAGATCCTTGTGAATGATTAAGAACCCATTCACACCG
AAATCATCTGAACAAAGCTCACGAGAAGATATTTCTTGACAATAGAGAAG
GCTTTGGCACGGTTTCGGTTGTGTGCTTGATATGAATATCCGATAAGTTA
CA

Coding sequence (CDS) from alignment at CM002456.1:836000..839251-

>rna960 ID=rna960|Name=rna960|organism=Nannochloropsis gaditana|type=CDS|length=2577bp|location=Sequence derived from alignment at CM002456.1:836000..839251- (Nannochloropsis gaditana)
ATGAGTGGGGGGCCACCATTTCGTGCATTGGTTGGTGGAATTAACGGTCT
AGCTACAACGCATGACAATGAAGTAGCCAGCTGCGGAAAGGGGTTAGAGA
TAAGCATGTTGAGTAGTGAAGCACGCGAGATACAAGGCGGAGGAAAAACT
GCAATGCAGGAGGACGAAGGAGAGCCGACGGCAGCAGCTCTGCAATCAAC
CACTGGCAGGAAAATGGGTGATGAAAGGACACGTCTTGCTGGGTTCATTG
GGAATGTGACAACACAGGCGTCGCAGCCCTCTCCTTCAGGTCTCTCGACT
GCCGAAGAGGATATACAAGGAAGATCGGGGAAGCCGCACCCGGACGAGGC
AGGGGTTCGAGAGGAAGAAGAACAGGGCGTCGACAGCAGCGGCGACGGCC
ATGACGCCGAGACAAGTAGAATCGGACAACATGGATCAAATGAGCTTATG
GTAGGTGTCCGTGAAGTGCGAACGCAGATGTTGCTCGAGAATATGCTGGA
GTTGCAGGACCTGAGTCTTGACTACCTAGTAGAATTCCTGGCTCAGGATG
GAGTGCTGGAAAAGTTTTTGAGCTTTATCGTTCAAATTGATGAGGAAGAA
GTGGAAGAGGAGGAGCGGTGTGAAGGAAAGGAGGGAGACCTGGCAAGCCC
CAGCAACGCGCGGAGCTCTCTGACACTTGCGAAGGAGCGACGACGGCGGC
TTCAAAGAGGGGACGTGTTGTATGAGGAAGACGAGATAGCGCTTTCTCGC
TCTTATCATGCTATGCTTTTACTGGCAAGCGCAGAACCCAGTGTACAGTT
ACTCAAGTTCCTGTCTAAGAAGATCACAGTTATTACCGACGCTATGTTCG
AAGTTCTCAGCCCGCGGTCCCGTGGCTGCATCCATCACGCCTGTCGCGTG
ATGGACTACCTGCTCCGCTCTCTCACAGAGCCATTCCTGCGTCACGTTGG
GTGTAACCGAGGCTCGGTAAAGCGGTTTTTGGGGCCGATGGTACGCAACC
TTGCCGAGCCCCCGGTGGCTGAACTCCTGATGAAGATCCTTACTGCCCCC
TCGCCAGCCAATCAAATGGGCCAATATCAGATTTCGCCCGTGGCCAAATG
GCGCCTTTTCGAGTCGTTAGCCGATTGGCGCTTTCTAATTGTACTCGCAG
GAGAAGTCTCGATATCAGGTGGCCACCCTCAACAAGTGTCAGCTGCTGCC
GACTTCTTCATAGACTTGCTGGACAGCTTAGCAACGGATGAGAACGGAGA
GCTGCTCCTGCAGCCGATCGCGCATTGTCCTGAGCTGCTTGGGGGGCTTT
TTGACCGAGCCCTTGATTTAAATGCGCCCTCTTTGCAGAGAGGAGATTGT
GTGCGCGTCCTGCTCGCTCTCGCGGGTCGGAGCTGCGAGCCCGAGATCCC
TGCAAGCAGCATGGCACTTACCCACTTTCAAATACCTTCGGGTCTCGCAT
CGCTTCCGATGGTTCCCAATCAGTTTCGCTCAGTCCACACACTGTTCCGT
AGTACACTTGCGACGCACTTGCGGGATCTCTGCGAGTGTTTGCTGAGGGA
GGGCGGTGGAGGCGCGGCATCGCCTGGCTTGGGAGGGCCGGTAGCGCATC
CGGGCCACGTGGTGGAGGCGCCCTTCTCCTACCTCCGCCTTTCGCTCGTG
AATCTTCTGGTTGAGATTGTGGACCCGGGTGCAGATAAGGGCCTCAAGGC
CAAAGAGAGGCAGCAAAGCCATCGCAGGGCGCGTCAGCAGAAAGAGGAGG
CCCGCGACGTGCTCGAACGAGTCCCCCCGGCGCTTTGGCGGCTCCTGTGC
CAGTGGTTCTTTCAATACCCGTTCAGCAACCTGTACCATGGCCTTTTTTA
TCGCTTGGTTCGCTGCGTTCTTAGGTCGGATGATGAAGAAGTACAACGGA
TTCTCTTCAGCAAGTGTCGCCTCGTTTCTTCGCTTGTGGATGCATATTGC
AAGGCTGGAGGGGCGATGGGAAACCGTGGCCATGTACTCAATATTTGCAA
TGCTCTTCGCCTCCAGGCAGGCACCCAATCTCCTGTGACGGGATGGCTGC
GCAATTATCTCAAGTCTCATGAAAGTTGGCGCCGCTTTGAAGAGCCGCTG
CGTGATGCCACTGAGACAGCCTTTCTCCATCCCGGTCTTGGACTTCGGGT
GCCTTCCGCCTTCGAGAAGCGCGAGATGGCGGAGATGTCGACTAGGGAAA
CAACGGGGCATTCCGATCTCGGTCACGGTCTGGAACTTATGTGCGGTTTG
CGATTGAACGATGTTGATCTGGCCCATGATGCCATTCGTGAAACCAGCAG
GACTGTGGTGAAGACGGAGGAGGTAGCAATGCATGCCTCGATCGATTACG
GGTCCCCTTTGGCTTACTTTCTGGGCCTCGGGGAGGAACAAGAATATCAA
GAAGATGAAACTCAGGCAAATCTTACCAGCTGCAAAAAGAAGAAGAAGAA
GAAAGGCAAAAAGAGAAAAGGTAAAGGAGGAGTGTCACGACATGCGGTGG
AGGACTTTGAGGACGCCATTGGGCCAGAACAAGGGTACGAGGAGGATTCA
GGTGTCGATAGCACATTGGATGTATGA

Synonyms

Publications