rna9599, rna9599 (mRNA) Nannochloropsis gaditana

Overview
Namerna9599
Unique Namerna9599
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1257
Alignment locationKK037254.1:259091..262106 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100041g43.3672.mrna
Orig protein idgnl|cribi|Naga_100041g43.3672
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:259091..262106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100041g43gene9318Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21102.1cds9568Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9599rna9599-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9599 ID=rna9599|Name=rna9599|organism=Nannochloropsis gaditana|type=mRNA|length=1257bp
ACACTTACCACTCATACAATTAGTTACAGGTAAGCTGGTGCTGACAAAGC
GCTTTTTGTGAAACAAAAAAACAATGACATGGTCATGCGCGCGCTTTAAA
TAATTTGCACGAGCTGTTTGTGATGGGGCTCTCGGCTCTATCATGCGCTG
CAGGAAGGAAACGAGGGCGGGCATCCGAGAGGGATGAACTGAGTAGGGCG
GAGGCCGCTCTCTGCGGAGCCGCGGCAGGAGGTGCCTCACGCATTCTGAC
GGCACCCTTCGACGTGCTCAAGATTCGATTTCAGCTTCAAGTTGGTTCCA
TCGCGACGGCTCTTGATCGGCAACGACTGGCATATCGATCCGTGCTCAGC
TCCCTCCGAAAAGTAATTACGGAGGAGGGAGTCATCGGGCTCTGGCGTGG
AAACTTGGCGGCAACCTATCTGTGGATTGGTTACGGAGCAGTGCATTTTC
CCGTTTACGAAGCACTGAAGGTGGAGCTCGCAGGCCTGCCAGCCTTGGCA
CCAGTCGCCTCCTTCCTGGCAGGCGGGCTCGCAGGCCTGGCTGCCACTGT
GGCGACTTATCCTTTCGACGTGATCAGGACGCAATTTGCGGCACAGGGCT
TGCCTCGCGCGCATGAGACGATGGCGTCATTCGTTGAGTCGACTCTTCGG
AGAGAAGGCTTGCATGGCCTCTTCTTAGGGCTGGCGCCCACGGCGCTCCA
AATCTTCCCCCGGATGGGTCTCTCCTTTGCGCTCTACGAATGGCTCTCCG
GACCCTACCAGAGCGGTGAACAGAACAAGAAAGCGCCGGGGAAAGCCGAG
AGAGAGGCGGGCGGCACCGAAGACTGGTGGGAAGATGTCCAGCGAGGGTG
CCGCAGCGCCCTCTATGGAGGGGTCTCGGGGGGCGCCGCGCGCGTGGCCG
TGTACCCGCTGGACACGCTCAAGCGGCGCATGCAAGCTCAGGTTCTCCGC
CTCCTCCCTCCAAGCGCCGGAACGGAGGCGGCGGGGCAGACTCATCGGTT
CCGGTCTTCCCGGGAATGTCTGAGGCACATGGTCAGGGAGGAGGGCTTCT
CGGCGCTCTACAAGGGCATGATCCCCACGCTCCTCAAGTCCGTCAGCTCT
ACCGCCATCATCTTCGGCGTCTATGAGGCACTGAAGCGGCGTTTCTTGCT
GGGGCCCGGGCAATGACAAGGGTGGCGGGGGGGAGGCATTGTGGAAGTGA
CTGCAGACCCCCCGAGGGCGAGAAAACAAAGCAAAGCATGTAAATTTTCC
AGGATTT
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protein sequence of rna9599

>rna9599-protein ID=rna9599-protein|Name=rna9599|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MATVREMLTRFRFAEATSRECRDEERRKGALKQMWYIEASRRTRLTGDDD
VTYSPLHVASRAIISALDTSMAGLRRRLHGHTNNSSSTSEPHTLHCACAP
ETKPTTKENGAGKTLSFYPSYQSANESTTSISSDINYSDCGSGALRQTGA
AKYSLADAKKLLGSFRRNR
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mRNA from alignment at KK037254.1:259091..262106-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9599 ID=rna9599|Name=rna9599|organism=Nannochloropsis gaditana|type=mRNA|length=3016bp|location=Sequence derived from alignment at KK037254.1:259091..262106- (Nannochloropsis gaditana)
TGCAATGCGATTAAGCACCTAGGCGCGTCATGGGCTTTGTCCGTCAATAA
AGCCAGTGACGGCTCCCGAGATGCAGCAGATCCGGCGTCTTCGTCCATGC
CTGGCCCATAACCTTTTTTTCGTGCATGCTCAGGCACCATTATCGTCGAT
TTGTATATCAAACATTTAAATCTATAGTGCTGTTACAACATTTTGACATC
CTATTTCTTCCAAACGCAATGGCAAATTGTCCTTCGGAGGTAGTATCATA
TTACGACGTTGTGGAATATTTCAGAAAAATTTCTTGGGGGGCCTTCAAAA
CTGGCGGTCAATAGCTATGGCTACTGTACGGGAAATGTTAACCCGTTTTC
GCTTCGCAGAGGCTACATCCCGTGAGTGCCGCGATGAAGAACGCCGCAAG
GGGGCGCTCAAGCAGATGTGGTACATTGAGGCGTCGAGACGTACCAGGCT
GACAGGAGATGATGATGTTACATATAGCCCGTTGCACGTCGCCTCGCGGG
CGATCATATCGGCATTAGATACGTCCATGGCTGGGCTACGAAGGCGCTTG
CACGGCCACACAAATAATTCAAGTTCGACGAGCGAACCCCACACTCTGCA
CTGCGCTTGCGCACCAGAAACAAAGCCAACAACGAAAGAAAATGGCGCAG
GCAAAACTCTCTCCTTTTATCCTTCCTACCAGTCTGCAAATGAAAGCACG
ACAAGCATCAGCTCTGACATTAATTACAGCGATTGTGGGAGCGGTGCTTT
GCGCCAGACCGGTGCTGCCAAGTACTCCTTGGCCGATGCCAAGAAATTGC
TTGGAAGCTTCCGTCGTAACAGGTGAGCGATTCTTACAAGCGCGTGCTCC
GCCTGAGAGAGACGATGATGCTCTTTCTTGTCATCAAGCACCCGCAGTAA
ATGTACATTCTTTCGACCTCGTGCTGCACTACGCCCCTCAGGCGCTCCCG
GCGACGAAAATTTCCTTTCTAGAGCCCCTTTTCCTATTTTCTTTTCAACT
TAAACGGGCTCTTTCAATCCTGCATCAACCTTCTCCTTCGGCTACCGGTA
TCGCAGCGGCTATCCCATTACATCCCTGTCCCGACAGCCGTGAGTGCTGA
AGGCCGCAAGCGGACAACATGGCTCTCCTCCTGGCTCAGTAGAGTCACTT
GCATGCGCCTCTTCCTCAATCTACCAAGCGAAAGCAAGGGCCATCTACAC
GCGGCCCCCCTGCTTCTTTCCTCACTGGGTCACGTAGGCCTCATACAGAT
CGTCATTCACCACGCGCTCCTCCAGCCGCCCCAGAAACGGAGCAAGGTGT
ACAGCCAAGACATGTTTGCACTATGTGAAGGTAAAAAGTGAATCCCATGA
GCCTGGTCCAAAGAACGCGTGTCTGGGTATTTGAAATGGAAAGGCCCCAG
GCGACATGCGATACGTGCAGATGGTGGAGAAACCTAAAGGAGAAACAATC
GAAAGAAGCGCAGTGTATTATTTGACATACCCGTGGCCTAAGGGATCTCT
GCTGCATTATGTGAAAGCTTTGGCAGGAACAGTCGCGCCCACTGAGCACC
GTATATTCGGCTCGGTCTCGCCTGTCCATTGACGACTGAAATTGAGAGGC
AGAACAATGATGATTACCTCCTCCTCGCAGGCTCACTCACCCTTTCACCA
AGTGGAGGCATCGTCGATATTGTCGCGTGATGATACGACGTACTGGCGCC
CGGTCCAACGCCTGTTTGACCAGCGGTGAGAAAGGAGTATACAAAATGTC
CCAACAATCTCCTCACCTCAACAGCCCCTTCCAGGAAGCCCGGTTCGTGA
TATAGCAGCTCTGACGCAAGTTTCAGCACAGCAGACTGTGCTATCTCGTT
CGAGCCCGTTGAGTGCTTCTCGTCGACCAGTTGAGGATCCTGTTGACCTG
TACAATTGCCACGCTCGCCCGAAGGAAATGGCGATACTGAACAAGAGGAA
GGGCACTCTTGCAGTTCTAAAACCCGAGACAGGAAGAGAATGGGGTCCAT
TCACCTGTGTAAGTAGCTAGAAGAAATATGACGGTGTTTTCCGTGATGTG
AAGGGGGAGAATAAATTCCTGATGTCAAAAAAGCAAAAACAATAATGTAA
TGCAGCCTCTAGAGGTGTGGAGCGATCGTCGACGACGACGAGGAGGGAGG
TTCATTTGACGCTGAGGAACAAGAGCAATGTCTTCACTATTACTTCTTCG
AAACGGACGCCATTGACAGCACAGTGAGCACACAAGGATGGCGAAGCGCT
CCCGATGCCCTCCAAACGCCACACGAGGCGTTGATGGCGCTTACTCCCTT
GTCAGCAATGCCATGGCCCGCGTCTCGGGGCTGGCGAGGCCTTTGGACGA
CAGGCTTGCGCGCCTGGCCGCCCTCGAGGTCCGTGCACTCTCAAAAAAGC
TGGCCTGGATGGGGACTTCTCATGCATATTCGTACCTTCAAGTAGGCAGC
AGCGGGCGGCAGAGGACAGCTTTCCACAGGGGAATCAGCGGTAAGCTGCC
CCCTTGTTGACTCGCTTGTCGTCTCCTCTCTGTGTCACACCCACGCATCG
CTAATGAATTTACTGCCCCTGAATAATGCACTAGTTCGAGAGTAAGGCCG
AGCATAGGAAGCCCGGCATCAACAAGGGCTTCCTCGTTAACACGATTAGA
AGGTAAAATTGATTTTCTCAGAATATATGGATGGGGGAAGTATTTTTCGC
CTCATCGTTTGTGCGGGAGGGAGGTCACGTAACATTTCACGCGGAACGTG
GCACAATGAAAATGAATGAGATAAAATGAATGAAAAGGACGTTTCTCGCA
GCCCTGCTGTCCTGCTATGCATCCTTAGGGAGTCGGCATAGGGAGCCACA
CCAGGAAGTCGGAGAGATATTTTGAGCAGGCAGGATCCTCCACGCGTGAT
CCGATAACGACCTCTCTTCGTATATATATAGCGTCTCACAGCACAACCGT
CGCGAGGAGGAGGCGGACTGCTGGCGGGCGCACGAGCAGCAAAAGAAGGG
GAGCCGGGCAGTGAGA
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Coding sequence (CDS) from alignment at KK037254.1:259091..262106-

>rna9599 ID=rna9599|Name=rna9599|organism=Nannochloropsis gaditana|type=CDS|length=510bp|location=Sequence derived from alignment at KK037254.1:259091..262106- (Nannochloropsis gaditana)
ATGGCTACTGTACGGGAAATGTTAACCCGTTTTCGCTTCGCAGAGGCTAC
ATCCCGTGAGTGCCGCGATGAAGAACGCCGCAAGGGGGCGCTCAAGCAGA
TGTGGTACATTGAGGCGTCGAGACGTACCAGGCTGACAGGAGATGATGAT
GTTACATATAGCCCGTTGCACGTCGCCTCGCGGGCGATCATATCGGCATT
AGATACGTCCATGGCTGGGCTACGAAGGCGCTTGCACGGCCACACAAATA
ATTCAAGTTCGACGAGCGAACCCCACACTCTGCACTGCGCTTGCGCACCA
GAAACAAAGCCAACAACGAAAGAAAATGGCGCAGGCAAAACTCTCTCCTT
TTATCCTTCCTACCAGTCTGCAAATGAAAGCACGACAAGCATCAGCTCTG
ACATTAATTACAGCGATTGTGGGAGCGGTGCTTTGCGCCAGACCGGTGCT
GCCAAGTACTCCTTGGCCGATGCCAAGAAATTGCTTGGAAGCTTCCGTCG
TAACAGGTGA
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Synonyms
Publications