rna9598, rna9598 (mRNA) Nannochloropsis gaditana

Overview
Namerna9598
Unique Namerna9598
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2801
Alignment locationKK037254.1:257351..258607 +

Link to JBrowse

Properties
Property NameValue
Productmitochondrial deoxynucleotide carrier
Orig transcript idgnl|cribi|Naga_100041g40.3679.mrna
Orig protein idgnl|cribi|Naga_100041g40.3679
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:257351..258607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100041g40gene9317Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9598rna9598-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21109.1cds9567Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9598 ID=rna9598|Name=rna9598|organism=Nannochloropsis gaditana|type=mRNA|length=2801bp
AAAAGCGCTTTGTCAGCACCAGCTTACCTGTAACTAATTGTATGAGTGGT
AAGTGTTTATCACTTCGCGGCGGTGACGTTGTTTGACTGTCCAGCTTCAA
GCAGCGAGCAGAGGCGAACGTCTGTCTCGAAGGAACTTTTTGTGGACCTC
CTGTTCAATTACGAGATGGGAGTCTTTTCAAAGCCACCTAAACAGTGTGA
CACCTCATGGATTCTAACACACCAATATTAAAGCTGGGGTTTAATCACAG
GAGGGCAAGGTCGAGCATCTGCGTGCGATTGCAAGCAAAGATATACCCTG
AGGTGCCTCCAGTGGATGCTGCCGTCGCATGCGCCTAGTCCAGTATCTGG
TCTTACTGTTGCTGGCAATCATCACCTCATTCATTCCTGCTGTTACTGCT
TTCAGGATTGACATAATGATCTCCAAGTTTATCGGCAAGCATCTGCCGGA
TTATACATATTCCGTGCCGGGGATGCTTTTCTACTTTCTAGACCCATCTC
ATACCTCGTTGGGGTTCAAGGCACGTTCCCTTTGTTTCGACAAGGAAGAC
TTGGATGTTAATTTGAGAGGACGAGTCGTGCTGATTGCCGGAGGTAATGC
TGGTATAGGCAGAAGTGCAGCTCAGTCTTTGGCGGAACTCGGGGCCACCG
TTCACATATTGTGCCGGTCCCGGGAAAAAGGGGAGCGAGCAGTCACGGAT
ATTCAATCCGTTACAGGAAATAAAGACGTGCATCTACATGTGGTTGATCT
GTCTTCGTTAAAGCAAATTCAGACATTTACGAATGAATTCGCAGCGAGCG
GCAAGCCTTTGCATGTGCTTATCAATAATGCTGCCACTATGCAAAGTGAG
CGAATGTTGACATCAGAAGGGTTCGAGCTCGCTCAGGCTACCAATTTGCT
GGGCTTTTATGGTCTTACTCGCGGCCTTCTTCCTGTTTTAAAGCTCAATG
CACCTTCCCGTATTATAAATGTCGTTTCCGCTGGTATGCTAGCATCCCAA
TTCAAGTTAAAATGTCTAGAGGAGGAGGAAAATATTAGTCCCTATGATGG
TGCAGCTGTCTACTCTCAGCACCATCGAGCGCGAGTTATGCTTACGGAAA
TCTGGGCTGATGAGCTGAAACACGAAAAGATCGTAGTTAACTCCGTTCAT
CCAGGTTGGGTTGATACGCCTTTGCTTCGGTCGGCCGGCCCAATGCAGGG
ATTTTATAAGTAAGTAATGGAAGAGTCGCTGTATCATAGAAAAAACTCAA
GTCATGACGTCGATTAAAGAATGTGAAAGATGAGTGTGGGATTTTCTGCT
AGCAACCGAATTCTGCGCGAATCTCGTCGCTTGACGAGCAGACAAAATAA
GCACTACATGGGAATTCATTCATAGATTGTCGAATGGCACGAAAGTTGAA
GCGCGTGCTTTTCATAACCAATTCCTGCTCACAACATTTAACACACTATC
TTTTAAGGCTCATGAGCAAACGTTTGCGATCGGAGTCTCAGGGTGCAGAT
ACGATAGTTTGGTTGGCAGCTTCTGATAAGGGTGGAAAAAAGACAGGTAA
ATACTTCTTCGATCGCAAAGCAAGATGGACAAATCTTCCATTTGCGAATA
CGAAGCCGGAACGGAACGATTACGAAAACCTTATCGACTTTTGTAAACGT
ATTATTGGAGACAAGCATGATGCATCTATGAAAGAAAAGGGGTCGTGAAC
ACCAGAGAGACATCTCTGCTTTGTGTGATTCAGTTCAACGGAAATTAATA
ACAAGACAATACACTTTAGATATATGCACCCTGAAACAACTTTTCTCGTA
GCTCCAAGAGAATGAGTTGGACTTATTTTTAATGAAAGTGCCTGTTATCA
GAACACAAAAACATGTAGTGGCGTTCAAAAATGTCACCCTCCTATGCGGC
CAAATTCCACAAACTCCATCATCTTACTCCAACATTCTCATGAGTTTTCC
ATTTTCTGCTCACAAGAAGAGTTGAAAATGCTTAAAAAGGGGAAAAGCAA
AGAAAAATCATTGGGGTTTTGATGGAGATGTTTCTTAAAAGGGTTTCATG
ACTAGGAAGACTGGTACGAAACTTGGAGATTGTTGATTTGGTCCTGTTTA
AATTACTGGACAAGAAAGCATCTATGTCATTAAGATGTGGTCAAGACAGC
ATCCATATCATTAAGATGTGGTTAATAGCACTTTGCTCCCAAGGCATTTG
AAAATTTACATGTCTGCTTCGCAGAGGACTACTACCAGTCGATCTCCTAA
GAAATAGGTCAAAGTTTCCGGGGGAATCTTCAAACACTACAAAAATGAAA
TAGTGAGGTCTGTCTTGAAATATTTATGAGCAAAGCATTCTTGAGTCCAC
AATTATCTTTTTAAAAAATGTAGAGCTAGCGAGGCACTCCCCTTCCCGAA
GAAGCTGGACCGATTGTTGGAGTGCGTACTTTGGTGCTTGAAGTGCTTGT
TTTTTGACTTTGCGCGTGAAGACGGTTCTGATCATTGATGACTTGAAGAA
TATGAATTATATTCGTCTCAAGTACCATCCCGGCCATAATAATCTCGTCC
AACACGTAGTGAACCTGGGAAAAATGTCATAATAATTGAATTTCGTAAAA
TTTCATTGGTAAAAGTACTAGGAGAAATACCTTGAATCGAAATCGCATAC
AATACAAACCTTGTCGCTATGAAAGATAAGATCCAGCTCGCAAACGTTTT
CGAAGCATTTATCCAGAGCCTCCACGAAAACTAGGTGCAATGAATGGCCA
GAATGAATAAAATTCGAAATAATTAAACACAATATCACTATCTCTTAAAC
A
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protein sequence of rna9598

>rna9598-protein ID=rna9598-protein|Name=rna9598|organism=Nannochloropsis gaditana|type=polypeptide|length=347bp
MGLSALSCAAGRKRGRASERDELSRAEAALCGAAAGGASRILTAPFDVLK
IRFQLQVGSIATALDRQRLAYRSVLSSLRKVITEEGVIGLWRGNLAATYL
WIGYGAVHFPVYEALKVELAGLPALAPVASFLAGGLAGLAATVATYPFDV
IRTQFAAQGLPRAHETMASFVESTLRREGLHGLFLGLAPTALQIFPRMGL
SFALYEWLSGPYQSGEQNKKAPGKAEREAGGTEDWWEDVQRGCRSALYGG
VSGGAARVAVYPLDTLKRRMQAQVLRLLPPSAGTEAAGQTHRFRSSRECL
RHMVREEGFSALYKGMIPTLLKSVSSTAIIFGVYEALKRRFLLGPGQ
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mRNA from alignment at KK037254.1:257351..258607+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9598 ID=rna9598|Name=rna9598|organism=Nannochloropsis gaditana|type=mRNA|length=1257bp|location=Sequence derived from alignment at KK037254.1:257351..258607+ (Nannochloropsis gaditana)
ACACTTACCACTCATACAATTAGTTACAGGTAAGCTGGTGCTGACAAAGC GCTTTTTGTGAAACAAAAAAACAATGACATGGTCATGCGCGCGCTTTAAA TAATTTGCACGAGCTGTTTGTGATGGGGCTCTCGGCTCTATCATGCGCtg caggaaggaaacgagggcGGGCATCCGAGAGGGATGAACTGAGTAGGGCG GAGGCCGCTCTCTGCGGAGCCGCGGCAGGAGGTGCCTCACGCATTCTGAC GGCACCCTTCGACGTGCTCAAGATTCGATTTCAGCTTCAAGTTGGTTCCA TCGCGACGGCTCTTGATCGGCAACGACTGGCATATCGATCCGTGCTCAGC TCCCTCCGAAAAGTAAttacggaggagggagtcatCGGGCTCTGGCGTGG AAACTTGGCGGCAACCTATCTGTGGATTGGTTACGGAGCAGTGCATTTTC CCGTTTACGAAGCACTGAAGGTGGAGCTCGCAGGCCTGCCAGCCTTGGCA CCagtcgcctccttcctggcaGGCGGGCTCGCAGGCCTGGCTGCCACTGT GGCGACTTATCCTTTCGACGTGATCAGGACGCAATTTGCGGCACAGGGCT TGCCTCGCGCGCATGAGACGATGGCGTCATTCGTTGAGTCGACTCTTCGG AGAGAAGGCTTGCATGGCCTCTTCTTAGGGCTGGCGCCCACGGCGCTCCA AATCTTCCCCCGGATGGGTCTCTCCTTTGCGCTCTACGAATGGCTCTCCG GACCCTACCAGAGCGGTGAACAGAACAAGAAAGCGCCGGGGAAAGccgag agagaggcgggcgGCACCGAAGACTGGTGGGAAGATGTCCAGCGAGGGTG CCGCAGCGCCCTCTATGGAGGGGTCTCGGGGGGCGCCGCGCGCGTGGCCG TGTACCCGCTGGACACGCTCAAGCGGCGCATGCAAGCTCAggttctccgc ctcctccctccaagcgccggaacggaggcggcggggcaGACTCATCGGTT CCGGTCTTCCCGGGAATGTCTGAGGCACAtggtcagggaggagggcttct CGGCGCTCTACAAGGGCATGATCCCCACGCTCCTCAAGTCCGTCAGCTCT ACCGCCATCATCTTCGGCGTCTATGAGGCACTGAAGCGGCGTTTCTTGCT GGGGCCCGGGCAATGAcaagggtggcgggggggaggcattgTGGAAGTGA CTGCAGACCCCCCGAGGGCGAGAAAACAAAGCAAAGCATGTAAATTTTCC AGGATTT
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Coding sequence (CDS) from alignment at KK037254.1:257351..258607+

>rna9598 ID=rna9598|Name=rna9598|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at KK037254.1:257351..258607+ (Nannochloropsis gaditana)
ATGGGGCTCTCGGCTCTATCATGCGCtgcaggaaggaaacgagggcGGGC
ATCCGAGAGGGATGAACTGAGTAGGGCGGAGGCCGCTCTCTGCGGAGCCG
CGGCAGGAGGTGCCTCACGCATTCTGACGGCACCCTTCGACGTGCTCAAG
ATTCGATTTCAGCTTCAAGTTGGTTCCATCGCGACGGCTCTTGATCGGCA
ACGACTGGCATATCGATCCGTGCTCAGCTCCCTCCGAAAAGTAAttacgg
aggagggagtcatCGGGCTCTGGCGTGGAAACTTGGCGGCAACCTATCTG
TGGATTGGTTACGGAGCAGTGCATTTTCCCGTTTACGAAGCACTGAAGGT
GGAGCTCGCAGGCCTGCCAGCCTTGGCACCagtcgcctccttcctggcaG
GCGGGCTCGCAGGCCTGGCTGCCACTGTGGCGACTTATCCTTTCGACGTG
ATCAGGACGCAATTTGCGGCACAGGGCTTGCCTCGCGCGCATGAGACGAT
GGCGTCATTCGTTGAGTCGACTCTTCGGAGAGAAGGCTTGCATGGCCTCT
TCTTAGGGCTGGCGCCCACGGCGCTCCAAATCTTCCCCCGGATGGGTCTC
TCCTTTGCGCTCTACGAATGGCTCTCCGGACCCTACCAGAGCGGTGAACA
GAACAAGAAAGCGCCGGGGAAAGccgagagagaggcgggcgGCACCGAAG
ACTGGTGGGAAGATGTCCAGCGAGGGTGCCGCAGCGCCCTCTATGGAGGG
GTCTCGGGGGGCGCCGCGCGCGTGGCCGTGTACCCGCTGGACACGCTCAA
GCGGCGCATGCAAGCTCAggttctccgcctcctccctccaagcgccggaa
cggaggcggcggggcaGACTCATCGGTTCCGGTCTTCCCGGGAATGTCTG
AGGCACAtggtcagggaggagggcttctCGGCGCTCTACAAGGGCATGAT
CCCCACGCTCCTCAAGTCCGTCAGCTCTACCGCCATCATCTTCGGCGTCT
ATGAGGCACTGAAGCGGCGTTTCTTGCTGGGGCCCGGGCAATGA
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Synonyms
Publications