rna9590, rna9590 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9590
Unique Name	rna9590
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1716
Alignment location	KK037254.1:241917..243614 +

Link to JBrowse

Properties


Property Name	Value
Product	aspartate aminotransferase
Orig transcript id	gnl\|cribi\|Naga_100041g30.3708.mrna
Orig protein id	gnl\|cribi\|Naga_100041g30.3708
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:241917..243614 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g30	gene9309	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9590	rna9590-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21138.1	cds9559	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:241917..243614+
coding sequence from alignment at KK037254.1:241917..243614+

mRNA sequence

>rna9590 ID=rna9590|Name=rna9590|organism=Nannochloropsis gaditana|type=mRNA|length=1716bp
TCGATGCACGAGGCTTCGTCGGGGCGCCGACCTCGACACTTTCTGAGAAA
TGAAAACCATACCTGATTAAGCTGCGGAATGCCTCACTGTCAAAGGTTTT
CATGTCAAAGAACAAAAGCAAGAGGAATGGGACACAGCAACATACACGTA
CCTGGCTTTGTTCAGATATCAGATATGGCAGATTGGAGGCTAAGAAAGCT
TCAGGTCTTGGGCGCGACCGTGCGTGCAATAATGCCCGCTTACACTAATA
CGAAGCTTGTCTCCTCACATCAGCAGGCAAAAATCTCTAACTTCAGATCC
AAAAGAGCAGGCATTTCCAACTCGTTGCTTGCCTATGTCCGACTCTGACA
AAGGAAAAGTCATCGAGTGCAAGGCGGCCGTAGCGTGGGAGGCAAACAAG
CCGTTGGTAACGGAGACTATCCGCGTGGACCCACCCAAGGAAGGAGAGGT
CAGGCTGAAGGTGGTGGCGAATGCCCTCTGTCACACAGATGTGTACACTC
TCTCAGGGCAAGACCCCGAGGGCCTCTTTCCCTGCATCCTGGGTCACGAG
GCAGGGGCGATCGTGGAGAGTGTGGGCCCAGGCGTAACCTCGGTGCAGCC
AGGCATGTACGTGATCCCTTGCTACACTCCTCAATGTAAGGATGCGGCCT
GCATCTTCTGTCAATCTCCCAAAACAAACCTTTGTCCCAAGATCCGGGCC
ACCCAGGGGAGGGGCGTCATGCCTGACGGGACATCCCGGTTCAGCACCCT
GGACGGAAAGCCCATCTACCACTTCATGGGCTGCTCCACTTTCGCCGAGT
ACACCGTAGTGGCCGAGATCTCTTGCGCCGTAGTCTCCGAGAAGGCCCCC
CTGGACAAGGTCTGTCTCTTCGGGTGCGGCGTCTCCACCGGACTGGGAGC
GGTCCTGAAGACATGCGCGGTGGAGGAGGGTGCAAGTGTGGCTGTCTTCG
GCCTGGGCGCCGTAGGGCTGGCGGTCGTTCAGGCCGCAAAGATACGAAAG
GCCCGCCGGATATTTGCGGTAGATACGAACCCAAAGAAGTTCGAGATGGC
CGTGCAGCTAGGTGCCACGGACTGCCTGAATCCCAATGATATTCCCGACA
AGCCCATTCAGCAGGTGATCGTGGAAGCTACCACCTGGGGTGTGGACTAT
TCCTTCGACGCCACAGGCAACGTCGAGGTTATGCGTGCTGCGCTGGAGTG
TGCGCATCGGGGCTGGGGCGTATCCTGTGTCATTGGCGTGGCGGCTTCGG
GTAAACTTATCCAAACGCGGCCTTTCCAGCTCATTACAGGCCGCTCTTGG
AAAGGCACGGCATTCGGAGGATGGAAGAGCCGCACCGACGTGCCAGATTT
GGTTGACCAATATATGGATGGGAAGCTTCCGATTGACCATTATGTGACTC
ATAGTTTCGAGGGTGTTAGTGCGATAAATGACGCAATTCATGCATTGCAC
GAAGGGGATTGCCTCCGCGCCGTAGTGTCTTATTTCAAACAGTGACTTAT
CGGAGACTTGCGTTGAGTGAGGTTGCCCTGGGCACCTTATCCATACATAG
GATTGATCCCGACACATGTGCTGGAAGAATGGTGTCTATTGATGCTAGGA
AAGCCCCGAGGTTGCCTTCCTTTTTCCTACGCTCCCGCCTCGATCGGGGG
GTACGTCTCACACCGGGGCGTGTTTTGAAAGCAAAGTGAAGTCGCAAGAC
TTGCCACCATTTTGAT

protein sequence of rna9590

>rna9590-protein ID=rna9590-protein|Name=rna9590|organism=Nannochloropsis gaditana|type=polypeptide|length=486bp
MDKIFQFHTVLTMNLPYVICPNSAFSKLDRGVAAAKIGMGGRFKKVPLLP
ADTIIDLNRQIRNDNNPHKVDLGVGAYRDSSGKPYVLDVVKAAEARVVAD
TSYNHEYVPIEGWAPFRLASQKILFGPGHPVMAAGCVATVQALSGTGALR
VGFEFLRRMIPDPVVYLPSHTWGNHLKVLQESGFEDVRKYRYYDAARLSL
DSEGMCADLSAAPPGAIVLLHTSGHNPVGFDPSVSDWERLAELCKEKDLL
PFFDNAYQGYTSGSLEEDAFSVRFFAAQGLELLCACSFAKNMGLYGERIG
ALHAVVSSPLEVQSLISQFQAIIRPMYSSPPSHYARVAGLILSDPALFDA
WQVELQRMAGRIQHMRELFLEALTRHACPGEWGHMARQRGMFGFTGLKKE
HVAALKKEYSIYMLDNGRISLSGLNENNVDYVARAFAHVLRTESPQTETY
SCVHTARKEETMSMLPECEDPLNTPSDHSVPQQAHL

mRNA from alignment at KK037254.1:241917..243614+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9590 ID=rna9590|Name=rna9590|organism=Nannochloropsis gaditana|type=mRNA|length=1698bp|location=Sequence derived from alignment at KK037254.1:241917..243614+ (Nannochloropsis gaditana)
TGATGTAGAATCGATTATATCAGTACGACTATATCAGTAAAGCCCGATGG
TTTATATGTTGATGACAAGCCTATTTTTACGGTCTCCGCGATGGACAAGA
TCTTTCAATTTCATACCGTGCTCACGATGAATCTGCCTTATGTCATTTGT
CCGAACAGCGCTTTCTCTAAGCTTGATCGTGGTGTAGCAGCGGCCAAGAT
AGGCATGGGTGGGCGCTTTAAAAAAGTGCCCCTGTTGCCCGCGGACACAA
TCATCGATCTTAACCGTCAAATCAGGGTAAGAAATGCAGCCGATCCCCTG
TCTTTGGTACTTTCTTGCATCGGTTGTGCTTTCTAAACTTTCTTCTGTGT
TATCTTCTAACATTCGAACAGAATGATAACAATCCTCACAAGGTGGATTT
GGGCGTTGGTGCCTATCGAGACAGCTCGGGTAAGCCCTACGTCCTGGACG
TGGTAAAAGCCGCGGAGGCCCGAGTAGTCGCTGACACCTCCTACAATCAT
GAGTACGTTCCTATCGAGGGCTGGGCGCCTTTCAGACTGGCGAGCCAGAA
AATTCTATTTGGACCTGGGCATCCAGTCATGGCTGCAGGTTGTGTGGCCA
CCGTCCAGGCGTTGTCGGGAACGGGAGCATTGCGAGTAGGCTTCGAGTTT
CTTCGGCGCATGATCCCGGACCCCGTAGTCTACCTGCCGAGCCACACCTG
GGGCAATCACTTGAAAGTCTTGCAGGAAAGTGGCTTTGAGGACGTGAGGA
AGTATCGGTACTACGATGCGGCTAGGCTCAGTCTCGACTCGGAGGGCATG
TGTGCCGATCTGTCGGCAGCTCCTCCGGGGGCGATTGTCTTGCTGCATAC
ATCGGGTCACAACCCTGTGGGCTTTGATCCCTCGGTATCAGACTGGGAAA
GGCTTGCTGAGCTTTGCAAGGAGAAGGATCTGTTGCCCTTTTTTGACAAT
GCCTACCAAGGATACACGTCCGGCagcctggaggaagacgccttcTCGGT
CCGATTTTTCGCGGCCCAAGGCCTCGAGCTCCTCTGTGCCTGCTCATTCG
CCAAGAATATGGGGCTGTATGGGGAACGGATTGGTGCATTACACGCTGTG
GTGAGCTCTCCGCTCGAAGTACAAAGCCTCATCAGTCAGTTTCAGGCCAT
CATTCGGCCTATgtattcctctcccccctctcactACGCTCGCGTTGCTG
GGCTCATTCTGAGTGACCCTGCCCTCTTCGATGCCTGGCAAGTAGAGCTT
CAACGAATGGCTGGACGAATACAACACATGCGAGAGCTTTTCTTGGAAGC
TCTGACGCGCCACGCTTGCCCCGGAGAGTGGGGGCACATGGCGCGGCAAC
GAGGTATGTTCGGATTCACAGGCCTAAAGAAAGAGCACGTGGCAGCCTTG
AAGAAGGAGTACAGCATCTATATGCTAGATAATGGCCGAATCTCGCTCTC
TGGTTTGAATGAGAATAATGTTGACTATGTCGCACGGGCGTTTGCACATG
TACTGCGCACAGAGTCTCCGCAAACAGAAACCTACTCGTGTGTACACACt
gcaaggaaagaggagactATGTCTATGTTGCCCGAATGCGAGGATCCTCT
GAACACTCCGTCCGATCATAGCGTACCGCAGCAGGCACATCTGTAACTTA
AAAATATAGGTTTTTGAACGAATATCGCAAAATGCTATTGAACGTCTT

Coding sequence (CDS) from alignment at KK037254.1:241917..243614+

>rna9590 ID=rna9590|Name=rna9590|organism=Nannochloropsis gaditana|type=CDS|length=2922bp|location=Sequence derived from alignment at KK037254.1:241917..243614+ (Nannochloropsis gaditana)
ATGGACAAGATCTTTCAATTTCATACCGTGCTCACGATGAATCTGCCTTA
TGTCATTTGTCCGAACAGCGCTTTCTCTAAGCTTGATCGTGGTGTAGCAG
CGGCCAAGATAGGCATGGGTGGGCGCTTTAAAAAAGTGCCCCTGTTGCCC
GCGGACACAATCATCGATCTTAACCGTCAAATCAGGAATGATAACAATCC
TCACAAGGTGGATTTGGGCGTTGGTGCCTATCGAGACAGCTCGGGTAAGC
CCTACGTCCTGGACGTGGTAAAAGCCGCGGAGGCCCGAGTAGTCGCTGAC
ACCTCCTACAATCATGAGTACGTTCCTATCGAGGGCTGGGCGCCTTTCAG
ACTGGCGAGCCAGAAAATTCTATTTGGACCTGGGCATCCAGTCATGGCTG
CAGGTTGTGTGGCCACCGTCCAGGCGTTGTCGGGAACGGGAGCATTGCGA
GTAGGCTTCGAGTTTCTTCGGCGCATGATCCCGGACCCCGTAGTCTACCT
GCCGAGCCACACCTGGGGCAATCACTTGAAAGTCTTGCAGGAAAGTGGCT
TTGAGGACGTGAGGAAGTATCGGTACTACGATGCGGCTAGGCTCAGTCTC
GACTCGGAGGGCATGTGTGCCGATCTGTCGGCAGCTCCTCCGGGGGCGAT
TGTCTTGCTGCATACATCGGGTCACAACCCTGTGGGCTTTGATCCCTCGG
TATCAGACTGGGAAAGGCTTGCTGAGCTTTGCAAGGAGAAGGATCTGTTG
CCCTTTTTTGACAATGCCTACCAAGGATACACGTCCGGCagcctggagga
agacgccttcTCGGTCCGATTTTTCGCGGCCCAAGGCCTCGAGCTCCTCT
GTGCCTGCTCATTCGCCAAGAATATGGGGCTGTATGGGGAACGGATTGGT
GCATTACACGCTGTGGTGAGCTCTCCGCTCGAAGTACAAAGCCTCATCAG
TCAGTTTCAGGCCATCATTCGGCCTATgtattcctctcccccctctcact
ACGCTCGCGTTGCTGGGCTCATTCTGAGTGACCCTGCCCTCTTCGATGCC
TGGCAAGTAGAGCTTCAACGAATGGCTGGACGAATACAACACATGCGAGA
GCTTTTCTTGGAAGCTCTGACGCGCCACGCTTGCCCCGGAGAGTGGGGGC
ACATGGCGCGGCAACGAGGTATGTTCGGATTCACAGGCCTAAAGAAAGAG
CACGTGGCAGCCTTGAAGAAGGAGTACAGCATCTATATGCTAGATAATGG
CCGAATCTCGCTCTCTGGTTTGAATGAGAATAATGTTGACTATGTCGCAC
GGGCGTTTGCACATGTACTGCGCACAGAGTCTCCGCAAACAGAAACCTAC
TCGTGTGTACACACtgcaaggaaagaggagactATGTCTATGTTGCCCGA
ATGCGAGGATCCTCTGAACACTCCGTCCGATCATAGCGTACCGCAGCAGG
CACATCTGTAAATGGACAAGATCTTTCAATTTCATACCGTGCTCACGATG
AATCTGCCTTATGTCATTTGTCCGAACAGCGCTTTCTCTAAGCTTGATCG
TGGTGTAGCAGCGGCCAAGATAGGCATGGGTGGGCGCTTTAAAAAAGTGC
CCCTGTTGCCCGCGGACACAATCATCGATCTTAACCGTCAAATCAGGAAT
GATAACAATCCTCACAAGGTGGATTTGGGCGTTGGTGCCTATCGAGACAG
CTCGGGTAAGCCCTACGTCCTGGACGTGGTAAAAGCCGCGGAGGCCCGAG
TAGTCGCTGACACCTCCTACAATCATGAGTACGTTCCTATCGAGGGCTGG
GCGCCTTTCAGACTGGCGAGCCAGAAAATTCTATTTGGACCTGGGCATCC
AGTCATGGCTGCAGGTTGTGTGGCCACCGTCCAGGCGTTGTCGGGAACGG
GAGCATTGCGAGTAGGCTTCGAGTTTCTTCGGCGCATGATCCCGGACCCC
GTAGTCTACCTGCCGAGCCACACCTGGGGCAATCACTTGAAAGTCTTGCA
GGAAAGTGGCTTTGAGGACGTGAGGAAGTATCGGTACTACGATGCGGCTA
GGCTCAGTCTCGACTCGGAGGGCATGTGTGCCGATCTGTCGGCAGCTCCT
CCGGGGGCGATTGTCTTGCTGCATACATCGGGTCACAACCCTGTGGGCTT
TGATCCCTCGGTATCAGACTGGGAAAGGCTTGCTGAGCTTTGCAAGGAGA
AGGATCTGTTGCCCTTTTTTGACAATGCCTACCAAGGATACACGTCCGGC
agcctggaggaagacgccttcTCGGTCCGATTTTTCGCGGCCCAAGGCCT
CGAGCTCCTCTGTGCCTGCTCATTCGCCAAGAATATGGGGCTGTATGGGG
AACGGATTGGTGCATTACACGCTGTGGTGAGCTCTCCGCTCGAAGTACAA
AGCCTCATCAGTCAGTTTCAGGCCATCATTCGGCCTATgtattcctctcc
cccctctcactACGCTCGCGTTGCTGGGCTCATTCTGAGTGACCCTGCCC
TCTTCGATGCCTGGCAAGTAGAGCTTCAACGAATGGCTGGACGAATACAA
CACATGCGAGAGCTTTTCTTGGAAGCTCTGACGCGCCACGCTTGCCCCGG
AGAGTGGGGGCACATGGCGCGGCAACGAGGTATGTTCGGATTCACAGGCC
TAAAGAAAGAGCACGTGGCAGCCTTGAAGAAGGAGTACAGCATCTATATG
CTAGATAATGGCCGAATCTCGCTCTCTGGTTTGAATGAGAATAATGTTGA
CTATGTCGCACGGGCGTTTGCACATGTACTGCGCACAGAGTCTCCGCAAA
CAGAAACCTACTCGTGTGTACACACtgcaaggaaagaggagactATGTCT
ATGTTGCCCGAATGCGAGGATCCTCTGAACACTCCGTCCGATCATAGCGT
ACCGCAGCAGGCACATCTGTAA

Synonyms

Publications