rna959, rna959 (mRNA) Nannochloropsis gaditana

Overview
Namerna959
Unique Namerna959
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1978
Alignment locationCM002456.1:835374..835932 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100124g7.8329.mrna
Orig protein idgnl|cribi|Naga_100124g7.8329
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:835374..835932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100124g7gene922Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna959rna959-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29708.1cds959Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna959 ID=rna959|Name=rna959|organism=Nannochloropsis gaditana|type=mRNA|length=1978bp
TGTGTTGTTCCTTTTCGCGGTGCTCTGTTTCTGCGTTCTCGACGACGGCA
TGCGAGTGCTCGGGCCCTGCCTGGCTTGCTAGGGGGGGAGCGGAGACGAG
AACGAGGGCGAGAAAGAGGGCGAAAACGAGGACGATAACTAGGGAGAAGG
GGACAATGCCGTGGTCGGTTCATGGGACAGTCGGGATCAACCTCGCCATC
GGTAGCCCGACCAGCACCCTGCCAACAACCCAGACTCGAGCGCAGACGGG
CGGCGGACGTCACCACTCATGACAAGCAGCATACCATTGAGATAAAACAA
ATTACGTCCCTTTGAAGCAGGAAGATGAAATTGTGCATTCAAATCTTTCA
AATTTACCTTGAAACACACTCTTAACTAGTATGTTGCGAGCTTTCCCGCT
CCTAGTGGAAGTGGACCGCTCGAGATGCTTTTACCACAGCAATGCAACCT
TGCGTTTACCATATCCATAGCTTCCTCCGATTTTATTGGGCTCCCCGATC
GAACAAATTATTTGATTACTCATCTCAAAAAGAAAAGCAACAATTCATGC
GTCAGCTATTTTTCATCCAGGATGAAAAATGGGGTCTGATTGCGCATACG
ACCCAGCCTGCACTCCGGCCATCTTGTGAGAGCAACAGCTCGTAGGTGCA
ACAAGTTGCTAGAAGCTGACAGGAAAGACAGGACGAACGACAATCGCAGC
GAAGAGACCAATGGCAAGCAGCAGCAGAGGAACGTCTCGCATCTTACGGA
CGCGAGCCGATATGTCGGCTGTTCGTAGAAGTTTCGGTAGCCTGTGTTCC
GTGGGCTTTGTGCCAACAATGGGTGCTCTCCACCAGGGTCATCTACACCT
CATGGAGCGAGCACGGCGAGAGAATGATATTCTTGTCGTGAGCATATTTG
TCAATCCCAAGGTAAGTTGCAGACTACAGTATCGCAGGGGAGATCTTAAT
GGAGAAGGTACAATGAGAAATTGAGGACATACTCTTCATACCGTAGCAAT
TTGGGCCCCACGAGGACTTCGATAAATATCCCCGACACCTGGAGAATGAC
GCTAAACTCGTCGTCGAGAAAGGCGTGGACTTCATCTTTGCTCCTGGGGT
GGCGGATATGTATACACCTTCTCATCGCTGTTACGTTGTGCCCGAGGGAT
TTGAGCATTTAGCAGAGGGAAAGTCGCGGCCTGGCCATTTCAAGGGCGTC
GCCACAATTGTAACGAAGCTTTTTGGCATCGTGCAACCGACAAAAGCATA
TTTCGGCCAAAAAGACGCAATGCAGTGTGTCCTGATGCGACGGTTGGTGG
AAGACCTGAACCTCCCCCCTGCAATCGTCGTGTGTGACACGGTTCGAGAA
AAAGATGGCCTTGCTATGAGCAGCCGCAACGCATACCTGAGCCAGCATGA
GCGCAGTGCTGCCCCTGTTGTGTATAAGTCTCTTCGAGCCGCTGAACAGG
CGTTTTGCAACTCAGAAACCAGCATCTCGGCGGCAGAGCTGCGAAAGATT
GTCCGAGATGTTCTTGCACGAGAGGAGCTGATTCATACCGTTGAATACGT
TTCAGTTGCGCGGAAAGACACAATGGAAGAATTGGAGGATATTGTGCAGC
CAAATGAAGGAGCTGTTATATCACTTGCTGTACGTCTTGGTAAAGTACGA
CTAATTGACAATGTTATCATATGAATTGTCAATAATCAAAGCGCAGCGAA
AATACTCTTGATATGACAAGTTGAGAGGCCTTAAACGAGGAAAATTATAT
TTGAATAGAAAAGAGGGGCTATCTTTCCGATGCCTTTTTCTCTCAGTACC
TTTTCACGACCAGAGCTAGGTTCTCAATTTGATTTAATCGACAAGAGACC
TTTTCTGATTACAAATGCCATGCGCAAACCCTTCTCAAGCGTTTTCGAGA
ATCTCCCGCCCTTTGCTTACTTGGCAAGTTTTCTTGTGAAAGTAATTGAC
AATAGAAAAACATGATCCCTCCAATACG
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protein sequence of rna959

>rna959-protein ID=rna959-protein|Name=rna959|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MGNCFGGGGGRDTRHEGILNPVASEDLLVAQSPLPSPQHFNQKTSNESKL
VPTFDEGRLKELSQVVPLRETMLDFVKHGRCLLDDVADSCAAPAQKTWDR
TAKGAHALKGAAKTPRLKIWQKGFQGGCGHDIFINCVELLYETLLKIDME
RAAE
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mRNA from alignment at CM002456.1:835374..835932+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna959 ID=rna959|Name=rna959|organism=Nannochloropsis gaditana|type=mRNA|length=559bp|location=Sequence derived from alignment at CM002456.1:835374..835932+ (Nannochloropsis gaditana)
ATGGGCAATTGCtttggtggagggggaggcagggataCACGCCATGAAGG
CATTTTAAACCCAGTCGCAAGCGAGGATTTACTTGTCGCCCAATCGCCAC
TACCGAGCCCCCAGCACTTCAACCAAAAAACCTCAAATGAATCAAAACTT
GTGCCCACATTTGACGAAGGGCGCTTGAAAGAATTAAGCCAAGTCGTGCC
TTTGCGGGAGACGATGTTGGATTTTGTCAAGCATGGGAGATGTTTGTTGG
ACGATGTCGCAGATTCTTGCGCAGCGCCTGCGCAGAAAACTTGGGATAGA
ACAGCTAAAGGGGCTCATGCACTGAAAGGCGCCGCCAAAACTGTCGGAGC
TGCTCGCGTTGCACACCATGCAGAGGTCATTGAGCGCTATGCGAAGCAAG
GGGAGGCATGTGACTCCCTTTTAGGGGATTTGGAAGCCGCGTTTGAAGAT
TTGGCAGAAGGGATTTCAAGGCGGGTGTGGTCATGACATTTTCATCAACT
GTGTGGAGCTCCTGTACGAGACGCTCTTAAAAATCGATATGGAACGAGCC
GCTGAGTGA
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Coding sequence (CDS) from alignment at CM002456.1:835374..835932+

>rna959 ID=rna959|Name=rna959|organism=Nannochloropsis gaditana|type=CDS|length=930bp|location=Sequence derived from alignment at CM002456.1:835374..835932+ (Nannochloropsis gaditana)
ATGGGCAATTGCtttggtggagggggaggcagggataCACGCCATGAAGG
CATTTTAAACCCAGTCGCAAGCGAGGATTTACTTGTCGCCCAATCGCCAC
TACCGAGCCCCCAGCACTTCAACCAAAAAACCTCAAATGAATCAAAACTT
GTGCCCACATTTGACGAAGGGCGCTTGAAAGAATTAAGCCAAGTCGTGCC
TTTGCGGGAGACGATGTTGGATTTTGTCAAGCATGGGAGATGTTTGTTGG
ACGATGTCGCAGATTCTTGCGCAGCGCCTGCGCAGAAAACTTGGGATAGA
ACAGCTAAAGGGGCTCATGCACTGAAAGGCGCCGCCAAAACTCCGCGTTT
GAAGATTTGGCAGAAGGGATTTCAAGGCGGGTGTGGTCATGACATTTTCA
TCAACTGTGTGGAGCTCCTGTACGAGACGCTCTTAAAAATCGATATGGAA
CGAGCCGCTGAGTGAATGGGCAATTGCtttggtggagggggaggcaggga
taCACGCCATGAAGGCATTTTAAACCCAGTCGCAAGCGAGGATTTACTTG
TCGCCCAATCGCCACTACCGAGCCCCCAGCACTTCAACCAAAAAACCTCA
AATGAATCAAAACTTGTGCCCACATTTGACGAAGGGCGCTTGAAAGAATT
AAGCCAAGTCGTGCCTTTGCGGGAGACGATGTTGGATTTTGTCAAGCATG
GGAGATGTTTGTTGGACGATGTCGCAGATTCTTGCGCAGCGCCTGCGCAG
AAAACTTGGGATAGAACAGCTAAAGGGGCTCATGCACTGAAAGGCGCCGC
CAAAACTCCGCGTTTGAAGATTTGGCAGAAGGGATTTCAAGGCGGGTGTG
GTCATGACATTTTCATCAACTGTGTGGAGCTCCTGTACGAGACGCTCTTA
AAAATCGATATGGAACGAGCCGCTGAGTGA
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Synonyms
Publications