rna9589, rna9589 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9589
Unique Name	rna9589
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1914
Alignment location	KK037254.1:239597..241500 +

Link to JBrowse

Properties


Property Name	Value
Product	Alcohol dehydrogenase GroES-like protein
Orig transcript id	gnl\|cribi\|Naga_100041g29.3705.mrna
Orig protein id	gnl\|cribi\|Naga_100041g29.3705
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:239597..241500 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g29	gene9308	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9589	rna9589-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21135.1	cds9558	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:239597..241500+
coding sequence from alignment at KK037254.1:239597..241500+

mRNA sequence

>rna9589 ID=rna9589|Name=rna9589|organism=Nannochloropsis gaditana|type=mRNA|length=1914bp
TACTATCAGTAATTCCGAGTTTTCTGTGCTCCTATCCCCACGCCCTCTTT
ACAAGGGGCGAGACGAATCGCGCAGTATAGTGATGAGGTCGATGTACATT
TACCGGAAACGCCTGAAGGAGCGTGGCAGTCAAGTGGGCGGGCCTCGAAG
AGCCTCCCAGGCCCGTCTCCCTCCCGCTATGCCGGGCGGTGGTGCCAGAC
CGCGTTGCTGACTGAGCCGCCCGGCATTTGGGGAAAACCTTCTCAGATTT
CGATGTTTTCTTTTAAAACGCATGCAGACAGACGGCTAGCAGCTTACTTT
GGCCACCTTTGACTCCACGTGACACGAGCAGCGGCACTTCATCTCTCCTC
TGCTTTTCGACCAGCCTCCCCACATCGTCACTCTCACGCTGATCAGGGAA
TCGGTTTTGAAGATGGGTTGTGCGGCACGTTTTTGTTTCTACACCAGCGT
AAAGAGCTATTGCAGTCGTGTTCAGACGAGACCTGTACCGTCTTTGCATT
CGCGAAAAATCGGGCTTCTGAGGCGCGCACACGCCAGCGTAACGACCGTT
GCCGAACAGGAACTGTATCGAGACAAGTACGTTGATATGCTAACTTCATT
GGGTGGAGATATTACTCCCAGCCTTGCACAGGCATTAATGGGTGCCTCCA
GTGTTTCAGAAGCGACAAGGCGGGGCGCGCAGATGCCTGCCCCCCCCCTG
GACGCCGCTACTGTTGTCAAAGCCGTGAAGAAAAGCGCCGAGGAGCTGGT
GGCAAGAGAACAGCCGCCGCTAAGCAACGAGGCCCTTCTCTTCCTTGCCG
ACATATTTTGGTCAGGACTTCGGATGCCAGACGTAAGCATCCCTCGGGAC
CAAGCCAAAGCGGCGGAGCTGTGGCGGGCGGCAGGGGAGCGGGGGGATGG
GGAGGGTGCGTACCGCTATGCCATGTGCTTGCTCCAAGGTGAAGGGGCGC
CCGAACACCGGGACCGTGCGACAACGCTTCTGAATGAGCTGGTAGAGAAG
GGCCATGTTCAAGCCACCTATAGCTTGGCTGTGCTGCTCTCGGCACAGCT
AGAAGACGGGCAACCGTTGAAACGACGCGGTGGGGCCAGAAGCAGGACGC
CACCTCAAAAGAAATTGGGAATGGGAGGTAAGAAGTCGGCGGTGGTAGTT
TACGGCCTCCTTCGTCGTGCAATTGCGGGCGGCGTGGTGCCGGCCGTTCA
TAACATGGGGAATCTCCTGGCTGAGGGTGCTCAGGAGCTGCCCCGCGACG
ATGAAGCGGCCTTGGAGATGTTCACGGCAGGTACGCGGCGTTTGGATGCA
CCGGATACTTTTGATTTCTCGCATTGCTTGGTTGCGAAGCTTAGAGAAGC
TTTCCCGACACACCGCAGGCGCCGAGCTGGGGGACCCCAAGAGCGTGTAC
ACGCTTGCGACCTGGCTCTGTCAGGGCCGCGGGGGCGAGGAGGACTGGGA
CCGCGGCTTCGAGCTTCACATGAAGGCGGCGAAGTTGGGGATGCCACAGG
CCATGTATAACACGGCCACCCACTACTTTTCGGGCCGAGGGGTGGAGCAA
GACATGGCGCAGGCCGCGCACTGGTTCAAGCTAGCGGCCGAGGCAGGCTT
CCCAAAGGCCATGATCAATCTTGGAAACATGCTTCTGGAAGGTTTTGCCT
TTCCCTCGTCTGTCGGTCAAAACCCTGTTGTCGAGGCGCGCAGTTGGTTT
GAGCGAGCGGTGGCGGCTGGGGACGACGCGGGAAATGACGGTCTGGCCAA
GTGCGACTCGCTTGTTGCCGATGAAGGTGACGGCGAATAAGATCGCAGGA
AATTATGATTGTGTATGTATTGTAAAAAAAAGAATTTATCAGGTACCAGC
TTTAATGCAGATTTCGTTCGTGAATTGGTATCTTGTGTATCGACTGAAGA
GGTCGTGGGTAGGA

protein sequence of rna9589

>rna9589-protein ID=rna9589-protein|Name=rna9589|organism=Nannochloropsis gaditana|type=polypeptide|length=386bp
MSDSDKGKVIECKAAVAWEANKPLVTETIRVDPPKEGEVRLKVVANALCH
TDVYTLSGQDPEGLFPCILGHEAGAIVESVGPGVTSVQPGMYVIPCYTPQ
CKDAACIFCQSPKTNLCPKIRATQGRGVMPDGTSRFSTLDGKPIYHFMGC
STFAEYTVVAEISCAVVSEKAPLDKVCLFGCGVSTGLGAVLKTCAVEEGA
SVAVFGLGAVGLAVVQAAKIRKARRIFAVDTNPKKFEMAVQLGATDCLNP
NDIPDKPIQQVIVEATTWGVDYSFDATGNVEVMRAALECAHRGWGVSCVI
GVAASGKLIQTRPFQLITGRSWKGTAFGGWKSRTDVPDLVDQYMDGKLPI
DHYVTHSFEGVSAINDAIHALHEGDCLRAVVSYFKQ

mRNA from alignment at KK037254.1:239597..241500+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9589 ID=rna9589|Name=rna9589|organism=Nannochloropsis gaditana|type=mRNA|length=1904bp|location=Sequence derived from alignment at KK037254.1:239597..241500+ (Nannochloropsis gaditana)
TCGATGCACGAGGCTTCGTCGGGGCGCCGACCTCGACACTTTCTGAGAAA
TGAAAACCATACCTGATTAAGCTGCGGAATGCCTCACTGTCAAAGGTTTT
CATGTCAAAGAACAAAAGCAAGAGGAATGGGACACAGCAACATACACGTA
CCTGGCTTTGTTCAGATATCAGATATGGCAGATTGGAGGCTAAGAAAGCT
TCAGGTCTTGGGCGCGACCGTGCGTGCAATAATGCCCGCTTACACTAATA
CGAAGCTTGTCTCCTCACATCAGCAGGCAAAAATCTCTAACTTCAGATCC
AAAAGAGCAGGCATTTCCAACTCGTTGCTTGCCTATGTCCGACTCTGACA
AAGGAAAAGTCATCGAGTGCAAGGCGGTGCGTCCTCAATGATCCTTCCCC
GGGTTACACACCGTAAGAATACCTTCACATTTTCATAAATGATGCGGGTG
TTGATGTTTCCACAGGCCGTAGCGTGGGAGGCAAACAAGCCGTTGGTAAC
GGAGACTATCCGCGTGGACCCAcccaaggaaggagaggtcaggctgaagg
tggtggcgaatGCCCTCTGTCACACAGATGGTAAGAGTCGAAACAAACTT
GGCGTGCATATGGAGGGGGACAAGACAAGGACTTCTCTTCCCCGTTGCTC
AAGCGCGCAATACGTGTCCCCACCCCCAGTGTACACTCTCTCAGGGCAAG
ACCCCGAgggcctctttccctgcaTCCTGGGTCACGAGGCAGGGGCGATC
GTGGAGAGTGTGGGCCCAGGCGTAACCTCGGTGCAGCCAGGCATGTACGT
GATCCCTTGCTACACTCCTCAATGTAAGGATGCGGCCTGCATCTTCTGTC
AATCTCCCAAAACAAACCTTTGTCCCAAGATCCGGGCCACCCAGGGGAGG
GGCGTCATGCCTGACGGGACATCCCGGTTCAGCACCCTGGACGGAAAGCC
CATCTACCACTTCATGGGCTGCTCCACTTTCGCCGAGTACACCGTAGTGG
CCGAGATCTCTTGCGCCGTAGTCTCCGAGAAGGCCCCCCTGGACAAGGTC
TGTCTCTTCGGGTGCGGCGTCTCCACCGGACTGGGAGCGGTCCTGAAGAC
AtgcgcggtggaggagggtgcaaGTGTGGCTGTCTTCGGCCTGGGCGCCG
TAGGGCTGGCGGTCGTTCAGGCCGCAAAGATACGAAAGGCCCGCCGGATA
TTTGCGGTAGATACGAACCCAAAGAAGTTCGAGATGGCCGTGCAGCTAGG
TGCCACGGACTGCCTGAATCCCAATGATATTCCCGACAAGCCCATTCAGC
AGGTGATCGTGGAAGCTACCACCTGGGGTGTGGACTATTCCTTCGACGCC
ACAGGCAACGTCGAGGTTATGCGTGCTGCGCTGGAGTGTGCGCATCGGGG
CTGGGGCGTATCCTGTGTCATTGGCGTGGCGGCTTCGGGTAAACTTATCC
AAACGCGGCCTTTCCAGCTCATTACAGGCCGCTCTTGGAAAGGCACGGCA
TtcggaggatggaagagccGCACCGACGTGCCAGATTTGGTTGACCAATA
TATGGATGGGAAGCTTCCGATTGACCATTATGTGACTCATAGTTTCGAGG
GTGTTAGTGCGATAAATGACGCAATTCATGCATTGCACGAAGGGGATTGC
CTCCGCGCCGTAGTGTCTTATTTCAAACAGTGACTTATCGGAGACTTGCG
TTGAGTGAGGTTGCCCTGGGCACCTTATCCATACATAGGATTGATCCCGA
CACATGTGCTGGAAGAATGGTGTCTATTGATGCTAGGAAAGCCCCGAGGt
tgccttcctttttcctacGCTCCCGCCTCGATCGGGGGGTACGTCTCACA
CCGGGGCGTGTTTTGAAAGCAAAGTGAAGTCGCAAGACTTGCCACCATTT
TGAT

Coding sequence (CDS) from alignment at KK037254.1:239597..241500+

>rna9589 ID=rna9589|Name=rna9589|organism=Nannochloropsis gaditana|type=CDS|length=3483bp|location=Sequence derived from alignment at KK037254.1:239597..241500+ (Nannochloropsis gaditana)
ATGTCCGACTCTGACAAAGGAAAAGTCATCGAGTGCAAGGCGGCCGTAGC
GTGGGAGGCAAACAAGCCGTTGGTAACGGAGACTATCCGCGTGGACCCAc
ccaaggaaggagaggtcaggctgaaggtggtggcgaatGCCCTCTGTCAC
ACAGATGTGTACACTCTCTCAGGGCAAGACCCCGAgggcctctttccctg
caTCCTGGGTCACGAGGCAGGGGCGATCGTGGAGAGTGTGGGCCCAGGCG
TAACCTCGGTGCAGCCAGGCATGTACGTGATCCCTTGCTACACTCCTCAA
TGTAAGGATGCGGCCTGCATCTTCTGTCAATCTCCCAAAACAAACCTTTG
TCCCAAGATCCGGGCCACCCAGGGGAGGGGCGTCATGCCTGACGGGACAT
CCCGGTTCAGCACCCTGGACGGAAAGCCCATCTACCACTTCATGGGCTGC
TCCACTTTCGCCGAGTACACCGTAGTGGCCGAGATCTCTTGCGCCGTAGT
CTCCGAGAAGGCCCCCCTGGACAAGGTCTGTCTCTTCGGGTGCGGCGTCT
CCACCGGACTGGGAGCGGTCCTGAAGACAtgcgcggtggaggagggtgca
aGTGTGGCTGTCTTCGGCCTGGGCGCCGTAGGGCTGGCGGTCGTTCAGGC
CGCAAAGATACGAAAGGCCCGCCGGATATTTGCGGTAGATACGAACCCAA
AGAAGTTCGAGATGGCCGTGCAGCTAGGTGCCACGGACTGCCTGAATCCC
AATGATATTCCCGACAAGCCCATTCAGCAGGTGATCGTGGAAGCTACCAC
CTGGGGTGTGGACTATTCCTTCGACGCCACAGGCAACGTCGAGGTTATGC
GTGCTGCGCTGGAGTGTGCGCATCGGGGCTGGGGCGTATCCTGTGTCATT
GGCGTGGCGGCTTCGGGTAAACTTATCCAAACGCGGCCTTTCCAGCTCAT
TACAGGCCGCTCTTGGAAAGGCACGGCATtcggaggatggaagagccGCA
CCGACGTGCCAGATTTGGTTGACCAATATATGGATGGGAAGCTTCCGATT
GACCATTATGTGACTCATAGTTTCGAGGGTGTTAGTGCGATAAATGACGC
AATTCATGCATTGCACGAAGGGGATTGCCTCCGCGCCGTAGTGTCTTATT
TCAAACAGTGAATGTCCGACTCTGACAAAGGAAAAGTCATCGAGTGCAAG
GCGGCCGTAGCGTGGGAGGCAAACAAGCCGTTGGTAACGGAGACTATCCG
CGTGGACCCAcccaaggaaggagaggtcaggctgaaggtggtggcgaatG
CCCTCTGTCACACAGATGTGTACACTCTCTCAGGGCAAGACCCCGAgggc
ctctttccctgcaTCCTGGGTCACGAGGCAGGGGCGATCGTGGAGAGTGT
GGGCCCAGGCGTAACCTCGGTGCAGCCAGGCATGTACGTGATCCCTTGCT
ACACTCCTCAATGTAAGGATGCGGCCTGCATCTTCTGTCAATCTCCCAAA
ACAAACCTTTGTCCCAAGATCCGGGCCACCCAGGGGAGGGGCGTCATGCC
TGACGGGACATCCCGGTTCAGCACCCTGGACGGAAAGCCCATCTACCACT
TCATGGGCTGCTCCACTTTCGCCGAGTACACCGTAGTGGCCGAGATCTCT
TGCGCCGTAGTCTCCGAGAAGGCCCCCCTGGACAAGGTCTGTCTCTTCGG
GTGCGGCGTCTCCACCGGACTGGGAGCGGTCCTGAAGACAtgcgcggtgg
aggagggtgcaaGTGTGGCTGTCTTCGGCCTGGGCGCCGTAGGGCTGGCG
GTCGTTCAGGCCGCAAAGATACGAAAGGCCCGCCGGATATTTGCGGTAGA
TACGAACCCAAAGAAGTTCGAGATGGCCGTGCAGCTAGGTGCCACGGACT
GCCTGAATCCCAATGATATTCCCGACAAGCCCATTCAGCAGGTGATCGTG
GAAGCTACCACCTGGGGTGTGGACTATTCCTTCGACGCCACAGGCAACGT
CGAGGTTATGCGTGCTGCGCTGGAGTGTGCGCATCGGGGCTGGGGCGTAT
CCTGTGTCATTGGCGTGGCGGCTTCGGGTAAACTTATCCAAACGCGGCCT
TTCCAGCTCATTACAGGCCGCTCTTGGAAAGGCACGGCATtcggaggatg
gaagagccGCACCGACGTGCCAGATTTGGTTGACCAATATATGGATGGGA
AGCTTCCGATTGACCATTATGTGACTCATAGTTTCGAGGGTGTTAGTGCG
ATAAATGACGCAATTCATGCATTGCACGAAGGGGATTGCCTCCGCGCCGT
AGTGTCTTATTTCAAACAGTGAATGTCCGACTCTGACAAAGGAAAAGTCA
TCGAGTGCAAGGCGGCCGTAGCGTGGGAGGCAAACAAGCCGTTGGTAACG
GAGACTATCCGCGTGGACCCAcccaaggaaggagaggtcaggctgaaggt
ggtggcgaatGCCCTCTGTCACACAGATGTGTACACTCTCTCAGGGCAAG
ACCCCGAgggcctctttccctgcaTCCTGGGTCACGAGGCAGGGGCGATC
GTGGAGAGTGTGGGCCCAGGCGTAACCTCGGTGCAGCCAGGCATGTACGT
GATCCCTTGCTACACTCCTCAATGTAAGGATGCGGCCTGCATCTTCTGTC
AATCTCCCAAAACAAACCTTTGTCCCAAGATCCGGGCCACCCAGGGGAGG
GGCGTCATGCCTGACGGGACATCCCGGTTCAGCACCCTGGACGGAAAGCC
CATCTACCACTTCATGGGCTGCTCCACTTTCGCCGAGTACACCGTAGTGG
CCGAGATCTCTTGCGCCGTAGTCTCCGAGAAGGCCCCCCTGGACAAGGTC
TGTCTCTTCGGGTGCGGCGTCTCCACCGGACTGGGAGCGGTCCTGAAGAC
AtgcgcggtggaggagggtgcaaGTGTGGCTGTCTTCGGCCTGGGCGCCG
TAGGGCTGGCGGTCGTTCAGGCCGCAAAGATACGAAAGGCCCGCCGGATA
TTTGCGGTAGATACGAACCCAAAGAAGTTCGAGATGGCCGTGCAGCTAGG
TGCCACGGACTGCCTGAATCCCAATGATATTCCCGACAAGCCCATTCAGC
AGGTGATCGTGGAAGCTACCACCTGGGGTGTGGACTATTCCTTCGACGCC
ACAGGCAACGTCGAGGTTATGCGTGCTGCGCTGGAGTGTGCGCATCGGGG
CTGGGGCGTATCCTGTGTCATTGGCGTGGCGGCTTCGGGTAAACTTATCC
AAACGCGGCCTTTCCAGCTCATTACAGGCCGCTCTTGGAAAGGCACGGCA
TtcggaggatggaagagccGCACCGACGTGCCAGATTTGGTTGACCAATA
TATGGATGGGAAGCTTCCGATTGACCATTATGTGACTCATAGTTTCGAGG
GTGTTAGTGCGATAAATGACGCAATTCATGCATTGCACGAAGGGGATTGC
CTCCGCGCCGTAGTGTCTTATTTCAAACAGTGA

Synonyms

Publications