rna9581, rna9581 (mRNA) Nannochloropsis gaditana

Overview
Namerna9581
Unique Namerna9581
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1470
Alignment locationKK037254.1:220534..220873 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100041g21.3685.mrna
Orig protein idgnl|cribi|Naga_100041g21.3685
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:220534..220873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100041g21gene9300Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9581rna9581-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21115.1cds9550Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9581 ID=rna9581|Name=rna9581|organism=Nannochloropsis gaditana|type=mRNA|length=1470bp
ATGCCTTGCTCGGGACCGGGTCAGGGCCCTGTTGCCACAGTCTTAACCTC
TATGAAGCGAGCCTTGCAAAAAAGAGCGTCCACTGGCAAACTTCGCAGGC
TTCCCGAGACGGTATTGCCGGGAGCGGTGGATTTCACCAGCAACGATTAT
CTAGGCCTGGCTCGATGCCCTGAACTGGCACAGCGTATTCAAAATGAATC
GAGACGCGTAGAGTCGCTGGCTAGGGTACATGGTGGTCCTTTCATTGGAG
CGACGGGTTCTCGACTTTTGTCAGGGACCACTTGGTATCACAATGAAGTG
GAGAATTGGTTGGCATCCTTCTTCCGTCGAGAGAGCGCGTTAGTCTTCAA
TTCTGGATATGATCTGAATTTGGGTTTGCTGGCTTGTCTAAGTCGCCCAG
GAGATGCAATTTTATTCGACGAACTCGTTCACAACTCAAGCGTGATGGGC
CTGCGGCTCGGAGCCTGGCGCCATCTGCACTCTGACTCCGCAAGTGTGTC
AAAGTCAAAAAAGCTTCACTCAATGGTGTTCCGGCACAACGATGTCGACA
GTCTAGAATCTCGCCTAGAGAAGGCTCGCGCCCTTCTGGGCGACCAGGCC
CTGCTTTTCGTGGCAGTGGAGGCCGTCTACTCCATGGACGGGGACGTGGC
GCCACTCTCGCAAATCTGTGACGCTGCCGCCCGCCACGGGGCATGTGTGA
TTGTGGACGAGGCACACAGCACGGGCGTGTTGGGTCCGGGGGGTCGAGGT
CTGGTGTGCGCGGAGGGTCTAGAGGACCATCCCGCGTTGCTGTGCTCCAT
CCACACGTTTGGCAAAGCCTTGGGCTGCCACGGCGCCGTGCTCTGTGGAC
CTCAACTTCTGCGGGACTACTGTGCGAACTACTGCGCTCCATTTATCTAC
TCGACAGCCTCCTCATTCCACTCACTGGCCAGCATGCGCCTCGCGGCAGA
GTACCAGGAGGGCCCGGAGGGTGACCGCCGCAGGTCCAGGCTCCATGCTT
TGGTGCATGTCTTCCGAAACGCAATGGATGGGGCTCTTGGGGAAAGGGAA
GGAAGCGGGCATCGACTGTTGCCTAGCTCTACGGCCATCCAGGCGCTGCT
GGTCCCGGGCAATGAACGCGTTACGGCCGTGGCGGCGGCCTTGCAGGCGG
TAGGACTGGACGTCCGGCCCTTACGGCCGCCGACTGTCCCCGCAGGGAAG
GAGAGACTTAGAGTCGTGCTCCATTTCCACAACACGGAGGAGGAATTGCG
CATTTTGGTCCAGCGCCTTTCGGACTGGCTCAATGTGAGTTTAATGGAAG
GCGGAAGTGGTGGCGCTGGTAGTACCGGAGGATTGGATGCTTCCACCCAT
TCCTCGAAGATTCCAATGACGATGGCTTCATCTATTTGTTCAAATGGTCG
GGAAGATTTTGGGGAGCCTTCTGCAATTTCGAAAAATAGAGCGTTGCACT
TAGCAATAAGTCGATTGTGA
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protein sequence of rna9581

>rna9581-protein ID=rna9581-protein|Name=rna9581|organism=Nannochloropsis gaditana|type=polypeptide|length=87bp
MLTKPRHICSQKHNQTSSKAPSPIVPEASSLLDVPWYTIFARLGIKKGLE
RPLRASALTVCVASHTQQCVLCWTPWNRKTRSGKRKY
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mRNA from alignment at KK037254.1:220534..220873-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9581 ID=rna9581|Name=rna9581|organism=Nannochloropsis gaditana|type=mRNA|length=340bp|location=Sequence derived from alignment at KK037254.1:220534..220873- (Nannochloropsis gaditana)
ATGCTCACAAAACCACGACACATATGTTCACAGAAACATAACCAAACAAG
CAGTAAAGCACCGTCACCTATTGTTCCCGAAGCATCGTCTTTGCTGGACG
TGCCTTGGTACACTATCTTTGCGCGACTCGGAATGTGAAGCCCTAGCTGT
TATCACCTCGACCCTTTTCTCGACTACGAAAAGTGATGGCGGGCGTAGTG
GAAAATAAAGAAAAAAGGGACTTGAGCGGCCATTGCGCGCCTCAGCCCTG
ACTGTATGTGTAGCAAGTCACACTCAACAATGTGTTCTATGTTGGACGCC
ATGGAATAGGAAGACGAGAAGTGGCAAAAGAAAATACTGA
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Coding sequence (CDS) from alignment at KK037254.1:220534..220873-

>rna9581 ID=rna9581|Name=rna9581|organism=Nannochloropsis gaditana|type=CDS|length=528bp|location=Sequence derived from alignment at KK037254.1:220534..220873- (Nannochloropsis gaditana)
AAAAAAGGGACTTGAGCGGCCATTGCGCGCCTCAGCCCTGACTGTATGTG
TAGCAAGTCACACTCAACAATGTGTTCTATGTTGGACGCCATGGAATAGG
AAGACGAGAAGTGGCAAAAGAAAATACTGAATGCTCACAAAACCACGACA
CATATGTTCACAGAAACATAACCAAACAAGCAGTAAAGCACCGTCACCTA
TTGTTCCCGAAGCATCGTCTTTGCTGGACGTGCCTTGGTACACTATCTTT
GCGCGACTCGGAATAAAAAAGGGACTTGAGCGGCCATTGCGCGCCTCAGC
CCTGACTGTATGTGTAGCAAGTCACACTCAACAATGTGTTCTATGTTGGA
CGCCATGGAATAGGAAGACGAGAAGTGGCAAAAGAAAATACTGAATGCTC
ACAAAACCACGACACATATGTTCACAGAAACATAACCAAACAAGCAGTAA
AGCACCGTCACCTATTGTTCCCGAAGCATCGTCTTTGCTGGACGTGCCTT
GGTACACTATCTTTGCGCGACTCGGAAT
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Synonyms
Publications