rna9569, rna9569 (mRNA) Nannochloropsis gaditana

Overview
Namerna9569
Unique Namerna9569
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2151
Alignment locationKK037254.1:195082..196521 -

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF1688
Orig transcript idgnl|cribi|Naga_100041g9.3709.mrna
Orig protein idgnl|cribi|Naga_100041g9.3709
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:195082..196521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100041g9gene9290Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21139.1cds9538Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9569rna9569-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9569 ID=rna9569|Name=rna9569|organism=Nannochloropsis gaditana|type=mRNA|length=2151bp
ATGCCTTCACGCGCATTGCTTATGCGCAGCTCCATATTATGTATTAATGC
CGCGATTGCCTGCCTAGTGACCTCAATTTATGCCCAGCTAGAGCCTCAGT
ACGTCCCCGCCGCTTCAAGCGAAAGTGTAACATGCTATCCGGCCGATGCT
TTGGCTTGGAGGTCAATTCCTGGTAAAATAGTCCTTCACGGTGCACCCTT
CGTGAAAACGCACCATAAAAAGGTACCTCCTGCCCAGCCATCGGAGCCTA
TTGTCACCGACCCTTCAGGAGGCGGAGGTGCTGCTGGTGGAATACGCCCG
GGTGGCGGAGTCACGCCCGAGCCGCAGCCAAAGCCCATCAACGGTGTGAA
GCCACCTCAGCCTCCTGTGACTGCGCCTCCTGCCCAGGTAGCCCAACCAA
TCGTTCCCTTCCCAGGAGCAGCCGGCCCGGGGGTCCCCGGACCTCAAGGC
GGCGTCCCTGGCGGTGCGGGCCGTCCGCTTCCTAACATGGATCCCTTCAG
GCCCCCCGAGCTGAAGCCCGCTGTCCGGCATTTACAGACACAAGAAGCCG
CGAAGGCGGGGGGGGATCAGAAGGTGGCCGGGGCGGTCGTGGGAGGTGTG
GCGATAGAGAACGGGTCGGGGACCGCGCGCGAAGAGGACGACTTGGACGA
GGAGGACAAGGCGGCGATAGCGCGAGAGTCCATGTATGCCTCCATCCAGC
TTAAGGGACTGAACTGGTTCGGCCTTGACCGCATCAATATCTTCGAGGGT
ACGAATTACAAGACGATCGACCAGGTCATGGCCTTCTTCGTGGCGCACAA
CATCAACGCGCTCCGGCTTCCCTTCTCTCTTGCTTTTGCGCTCACGCCCA
TGGACCACGAGGAGGCAGAAGCCGGGGGGGGGCAGGGAGAGCTCCAGTAC
CCGGATCGGGGGAAGATCTCGCCGGAGTACATCGGTCTGACGAGCTGGGA
GATCATCGACCTCCTGTTCGAGAAGGCCAAGGAGAACGGGATCCTCATCC
TGCTCGACATGCACACCCTCGACCCCGACAAGGGCGTGAGCCGCTTGTGG
TACGATCCTGCCAAGTACTCAGAAGCCACGGTCCTGTGGGGATGGGAGCG
AATCCTATCACGCTACGTGCACCACTGGAATCTGTTTGGGCTGGACATCA
TGAACGAATGCCACGACCACGCTTCCTGGGGGAAGGGCGACCCCATGACC
GACTTCAACCGCTACGTCGAGCGTTTCATCCTCTTCGTCCACGAGCGAGT
GCCGAGCTACCGCGGACTTTTCTTTGTGGAGGGGATCTTCCTCAACGCCA
TGGGCCGCGACCAGAGTCCCTGGCCCTACTGGTGGGGCGGAAACCTCTTC
GGCGCTGACAAGTACCCCATCGACGTGAAAATTGCCGCCTTGAACGACCG
TATCGTCTACGCCCCTCACATCTATGGTCCCGACGTCTCCAACATGTTCT
ACTTCAACGACTGGAGCTTTCCCAACAACTTGAAAAACGTCTGGGATAAC
CAATTCGGCTGGCTCATCAAGAGCACGCGCAAGGCCCTGGTGGTGGGTGA
GTGGGGCGGCAGCTGCAACAACAAGGACGGCATCGTCCAGGAGCATTTGG
CGCAATGGATGATCGACAACTGCTTCCAGTCCAACTTCTGGTGGGCTCTG
AATCCGGGCTCGGCAGACACAGACGGCCTCATGTCTCAGGACTGGTCGCA
TTTCGACGAGCGGAAGATGGCCCTCCTGGGGAAGGTGCAACCCAACCCCT
CCAAATTCACCTACGAGAAGGCCACCGACATGGTCTGTGTTCGCCATGGC
GCCCCCCCCAATCCGCAATGCGCCGACGACCTTGCGCACATCCTAAAGAC
GCCTGACACCCAGCAGGATCAGGACAACGGAGGCTGGAGGAAAAGAGCAC
CCATTGACGGTTGTGAGTCGAACAAGCCGTGGAGAGCAGGGTGCGCTGAA
GGTCTAGCTGAGTATCGTGGTGGATGGTGGCTGTCCATTGACAGAGGGGT
TGGCGGGGGGAGAAGCAGAAGCTCTCTCCTTCTCCAGCAGGGAGGAATAC
AAGGAAGGAATGAGGATCCTGACAGGCTCAAAGAATGGCCCGCACGACAC
ATGTTACAGACTCACGAGTGCTCAAGCGCGTACAGAAAAGCGAAGGATTA
G
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protein sequence of rna9569

>rna9569-protein ID=rna9569-protein|Name=rna9569|organism=Nannochloropsis gaditana|type=polypeptide|length=479bp
MACSSPPPNSATTSVGSPCTHQASKKARLLLQDPVDKLRALPTIRERCQQ
IYAAGQRGELKHFALHEDKIGEVVDYVQSVIEERFPGGMDMVPNHSRYRH
FEPGNVDRLSQLRSACKDVDKREVARRLVDLVVVSVLLDAGAGDKWKYVE
KETGLTIDRSEGLGVASFRMFMDGAFSSDAEQAKGKRLQADAVGLQALTS
QRVREGFQVKEDSNPLVGTEGRAALLRRLGKALEEHPEFFSSRLASKGAD
EDGGAEIFRPGYLVDYLFAQANPGTDPASVPVHDLWRVVMDGLESIWPAG
RTSVGGRPMGDVWPHSALALGGKVAEEGDGGLGEEKEAGACLVPFHKLSQ
WLTYSLMEPLAEAGLALTETRHMTGLPEYRNGGLFVDLGVLEAKRPELLD
PAGHAPGSEVIVEWRALTVVLLDEVARRLREKLGASEKSLPLVKVLEGGT
WTAGRKIAREKRPDSCGPPIVIVSDGTVF
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mRNA from alignment at KK037254.1:195082..196521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9569 ID=rna9569|Name=rna9569|organism=Nannochloropsis gaditana|type=mRNA|length=1440bp|location=Sequence derived from alignment at KK037254.1:195082..196521- (Nannochloropsis gaditana)
ATGGCTTGTTCGTCGCCACCTCCCAACTCGGCAACTACTTCTGTCGGGTC
TCCTTGCACACACCAAGCCTCTAAAAAAGCACGCTTGCTTCTTCAGGACC
CTGTAGATAAACTTCGTGCCTTACCTACTATTCGAGAGCGATGTCAGCAA
ATTTATGCCGCCGGTCAACGTGGCGAGCTGAAGCATTTCGCGCTGCACGA
AGATAAGATTGGGGAGGTAGTTGACTACGTGCAGTCCGTGATAGAAGAAC
GCTTTCCTGGCGGCATGGACATGGTGCCGAATCACTCACGATACCGTCAT
TTCGAGCCAGGAAATGTGGACCGTCTTAGCCAGCTCCGCAGTGCTTGTAA
AGACGTGGACAAGCGAGAGGTTGCCCGTAGGCTGGTCGACCTCGTTGTGG
TTAGCGTCTTGCTGGACGCGGGGGCCGGAGACAAGTGGAAGTACGTGGAG
AAGGAAACGGGATTGACGATCGATCGGTCAGAGGGTTTGGGTGTGGCCAG
CTTCCGCATGTTCATGGACGGGGCGTTCTCGAGCGATGCGGAGCAGGCGA
AGGGGAAAAGACTGCAGGCAGACGCCGTGGGCCTCCAGGCCCTTACAAGC
CAGCGCGTACGTGAGGGCTTTCAAGTCAAGGAAGACAGCAACCCTTTGGT
GGGTACAGAGGGCCGGGCCGCCTTGTTGCGACGGCTGGGGAAGGCGTTGG
AGGAACACCCGGAGTTCTTCTCGTCGAGACTAGCAAGTAAGGGGGCGGAC
GAGGACGGGGGGGCGGAGATCTTCCGTCCGGGCTACCTTGTCGACTACCT
CTTTGCCCAAGCCAATCCAGGAACGGATCCCGCCTCAGTGCCGGTACACG
ACCTGTGGCGCGTGGTCATGGACGGGCTGGAGTCCATATGGCCGGCGGGT
CGAACGTCGGTGGGGGGCCGGCCAATGGGGGACGTGTGGCCTCACAGTGC
CCTGGCCCTGGGGGGTAAGGTTGCCGAGGAGGGGGACGGCGGGCTGGGCG
AGGAAAAGGAAGCCGGCGCTTGCCTGGTCCCATTCCACAAGCTGTCCCAG
TGGCTGACGTACTCCCTAATGGAGCCCCTGGCCGAGGCCGGGCTGGCACT
GACGGAGACGAGGCACATGACGGGCCTCCCGGAGTACCGGAACGGCGGGC
TATTTGTGGACCTGGGCGTGCTCGAGGCGAAGAGACCGGAGCTGCTGGAC
CCTGCCGGGCATGCGCCGGGGTCGGAGGTGATCGTAGAGTGGCGGGCCCT
GACTGTGGTGCTGCTGGACGAGGTGGCCCGGCGGCTGCGGGAAAAGTTGG
GGGCCTCGGAGAAGAGCTTGCCCCTGGTGAAGGTCCTAGAGGGGGGGACA
TGGACGGCGGGGAGGAAGATAGCCAGAGAAAAGAGGCCAGACTCATGCGG
GCCCCCCATTGTGATCGTCAGTGACGGAACCGTGTTTTAA
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Coding sequence (CDS) from alignment at KK037254.1:195082..196521-

>rna9569 ID=rna9569|Name=rna9569|organism=Nannochloropsis gaditana|type=CDS|length=1440bp|location=Sequence derived from alignment at KK037254.1:195082..196521- (Nannochloropsis gaditana)
ATGGCTTGTTCGTCGCCACCTCCCAACTCGGCAACTACTTCTGTCGGGTC
TCCTTGCACACACCAAGCCTCTAAAAAAGCACGCTTGCTTCTTCAGGACC
CTGTAGATAAACTTCGTGCCTTACCTACTATTCGAGAGCGATGTCAGCAA
ATTTATGCCGCCGGTCAACGTGGCGAGCTGAAGCATTTCGCGCTGCACGA
AGATAAGATTGGGGAGGTAGTTGACTACGTGCAGTCCGTGATAGAAGAAC
GCTTTCCTGGCGGCATGGACATGGTGCCGAATCACTCACGATACCGTCAT
TTCGAGCCAGGAAATGTGGACCGTCTTAGCCAGCTCCGCAGTGCTTGTAA
AGACGTGGACAAGCGAGAGGTTGCCCGTAGGCTGGTCGACCTCGTTGTGG
TTAGCGTCTTGCTGGACGCGGGGGCCGGAGACAAGTGGAAGTACGTGGAG
AAGGAAACGGGATTGACGATCGATCGGTCAGAGGGTTTGGGTGTGGCCAG
CTTCCGCATGTTCATGGACGGGGCGTTCTCGAGCGATGCGGAGCAGGCGA
AGGGGAAAAGACTGCAGGCAGACGCCGTGGGCCTCCAGGCCCTTACAAGC
CAGCGCGTACGTGAGGGCTTTCAAGTCAAGGAAGACAGCAACCCTTTGGT
GGGTACAGAGGGCCGGGCCGCCTTGTTGCGACGGCTGGGGAAGGCGTTGG
AGGAACACCCGGAGTTCTTCTCGTCGAGACTAGCAAGTAAGGGGGCGGAC
GAGGACGGGGGGGCGGAGATCTTCCGTCCGGGCTACCTTGTCGACTACCT
CTTTGCCCAAGCCAATCCAGGAACGGATCCCGCCTCAGTGCCGGTACACG
ACCTGTGGCGCGTGGTCATGGACGGGCTGGAGTCCATATGGCCGGCGGGT
CGAACGTCGGTGGGGGGCCGGCCAATGGGGGACGTGTGGCCTCACAGTGC
CCTGGCCCTGGGGGGTAAGGTTGCCGAGGAGGGGGACGGCGGGCTGGGCG
AGGAAAAGGAAGCCGGCGCTTGCCTGGTCCCATTCCACAAGCTGTCCCAG
TGGCTGACGTACTCCCTAATGGAGCCCCTGGCCGAGGCCGGGCTGGCACT
GACGGAGACGAGGCACATGACGGGCCTCCCGGAGTACCGGAACGGCGGGC
TATTTGTGGACCTGGGCGTGCTCGAGGCGAAGAGACCGGAGCTGCTGGAC
CCTGCCGGGCATGCGCCGGGGTCGGAGGTGATCGTAGAGTGGCGGGCCCT
GACTGTGGTGCTGCTGGACGAGGTGGCCCGGCGGCTGCGGGAAAAGTTGG
GGGCCTCGGAGAAGAGCTTGCCCCTGGTGAAGGTCCTAGAGGGGGGGACA
TGGACGGCGGGGAGGAAGATAGCCAGAGAAAAGAGGCCAGACTCATGCGG
GCCCCCCATTGTGATCGTCAGTGACGGAACCGTGTTTTAA
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Synonyms
Publications