rna9562, rna9562 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9562
Unique Name	rna9562
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	450
Alignment location	KK037254.1:175855..178535 +

Link to JBrowse

Properties


Property Name	Value
Product	proteasome-associated protein ecm29
Orig transcript id	gnl\|cribi\|Naga_100041g1.3688.mrna
Orig protein id	gnl\|cribi\|Naga_100041g1.3688
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:175855..178535 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g1	gene9283	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9562	rna9562-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21118.1	cds9531	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:175855..178535+
coding sequence from alignment at KK037254.1:175855..178535+

mRNA sequence

>rna9562 ID=rna9562|Name=rna9562|organism=Nannochloropsis gaditana|type=mRNA|length=450bp
ATGGCCTCACCCAGCGGGCCCACCAGGGATGACTTGGACAAGCTACTCTT
CCGTCTCGTTATGGCGGAGGACAGTCGGATAGAAGGCCTCATACGCTTGC
ATTTGCCCATGCTCATGGACCTAATGTCCACTACTTCGGACGAAGGAATC
AGAAATAAGGTAGTAGAGTGCTGCTCCCACCTTCTCAAGCGTCTCCGAGC
AGACAACAAACTGCAAGTTCCATGCGACGTCCTGCTCGAAAAAGCTCGTT
CACCCGTCAATGGAGCATTCACAAAAAATTTTGCATTAGTATTCTTGGAG
ATAGGGTGCCCTCGCTTGCCTGCTGAAGCCAAAAATGCTTTAGGCTGGGC
CTTGTTGGTGGGCTTGGCGGCAGAGGGCACGGCAGATGAAGCGAAGCCCT
TCGGGAGACACCAAGTGGCATTGCGAGACCCGCGTCAAGGAGCGAGCTGA

protein sequence of rna9562

>rna9562-protein ID=rna9562-protein|Name=rna9562|organism=Nannochloropsis gaditana|type=polypeptide|length=829bp
MGAVRDDEYQFAVGQALAALALGGDVCVFASVWEGVVEGKVRDNSPHVRA
AATLWLLVLLWEAAAASAREGDMAREVQVQESHDATGAQSGAVQASDASI
PAAQTETDTTALLSLPRLLEAQQVLVTLLRDKSELGQEASGKALGVLCSL
AGHGPQVSSSTIPSTAPSPSTALQELTNALVLLLRGPSATANPTHLELNT
PSSQLPPIQTNMDVGTLNPFRELCAMATDLGQPQLLYYFLALPSTHPSWA
GRRAGLYAKGTPGPAGEGREEELQRALMPLLPRLVPRLYRARFDPTQAVR
QAMEPVWKSVLAAAAVAEGDVEATGQGSERGGSGSGKKVVKKYLDPILDD
LCEAAGSRKWRERQAAVAGLGELMPGRTFKEVRGRLERLWIIGFRALDDL
KESVQMAGMDLAKGLLQMTGRLSNTQESPAAEVEEVVRVILPLLLSQGLP
SKAKEVQGVAVLVLLRVVKGAGACLRPYLPELMSALIEAQSAIEPAQLQY
MQFHARSMDMTEEAMEQLRYGLSRSGPLQEALDICMKELDGPSLSRLMPS
LLLQLRSGVGLNTRCCAANLVLVLSTRFRPELKVHLPALLRVLAAGALAE
RSSTAQRFFLSALAGVAKLAPGGEEVRRAILRLLREYRRVADLATHRSQR
LPVVLALRQLCTAAGEGLEEAAWAAVLPLAYVGRFEEEEGGEGEVRKAWQ
EIWMEGCAALGKGGGNTTKALGDELCTEVERELRSSSWSGRRAALKALAS
LSEGLGRGGLRLHARRLVGELLDLLPGRLWEGKDEVLRALVKVVVACPGL
LREGGGGKDGCSGRSRGGGQGEGISLQGC

mRNA from alignment at KK037254.1:175855..178535+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9562 ID=rna9562|Name=rna9562|organism=Nannochloropsis gaditana|type=mRNA|length=2681bp|location=Sequence derived from alignment at KK037254.1:175855..178535+ (Nannochloropsis gaditana)
ATGGGAGCGGTCCGTGACGACGAATATCAGTTCGCGGTGGgacaggccct
ggcggccttggccttggGAGGGGACGTATGTGTATTTGCGTCGGTGTGGG
AGGGTGttgtggaggggaaggtgagagacAACAGCCCGCACGTTCGGGCC
GCTGCCACCCTGTggttgctggtgctgctctgggaggcggccgcggcctc
gGCTAGGGAGGGCGACATGGCGCGCGAGGTGCAGGTGCAAGAGAGCCACG
ACGCGACGGGGGCCCAGAGCGGGGCGGTGCAGGCGTCCGACGCATCGATT
CCCGCGGCGCAGACCGAGACCGACACGACCGCTcttctgtccctcccgcg
cctcttGGAGGCACAGCAGGTCCTCGTCACGCTCCTGCGGGACAAGTCGG
AGCTGGGACAGGAGGCAAGCGGGAAGGCCTTGGGTGTGCTTTGCAGCCTC
GCCGGGCACGGCCCCcaggtctcctcctctaccatcccctccactgcccc
ctccccgagCACGGCTCTTCAAGAGCTGACCAatgccctcgtcctcctcc
tccgcggtccctccgccaccgccaacCCCACCCACCTGGAGCTCAacacg
ccttcctcccagctcccccccatccagACCAACATGGACGTGGGCACTCT
CAACCCCTTCCGCGAGCTCTGTGCCATGGCCACCGACCTCGGACAACCAC
AGCTCCTTTACTACTTcctggccctcccctccacccatccctcctggGCC
GGGCGCCGCGCCGGGCTGTACGCGAAGGGGACCCCCGGCcccgcggggga
gggcagagaggaggagctccagCGTGCGCTCATGCCTCTACTCCCCCGTT
TGGTCCCTCGTCTCTACCGCGCCCGCTTCGACCCCACCCAGGCTGTCCGT
CAGGCAATGGAGCCGGTCTGGAAGAGTGTGCttgcagcggcggcagtTGC
CGAAGGGGACGTAGAGGCGACCGGGCAGGGTagcgagcgaggggggagtg
gcagtgggaagaaggtggtgaaAAAGTATTTGGATCCCATCCTGGACGAC
TTGTGTGAGGCTGCGGGGAGCCGTAAATGGCGAGAACGTCAGGCAGCGGT
GGCGGGCCTAGGAGAATTGATGCCGGGGCGGACGTTCAAGGAGGTAAGAG
GGAGACTGGAAAGACTGTGGATCATTGGCTTCCGCGCACTGGACGATTTG
AAGGAGTCAGTGCAGATGGCGGGCATGGACCTGGCCAAAGGCCTGCTGCA
GATGACGGGCAGGTTGAGCAACACGCAGGAGAGTCccgcggcggaggtgg
aggaggtggtgcgaGTGATACTTCCGCTTTTGCTCTCGCAGGGGCTGCCG
AGCAAGGCAAAAGAGGTGCAGGGGGTGGCGGTCTTGGTGCTTCTGAGGGT
GGTCAAAGGGGCGGGCGCATGTCTGAGACCCTACTTGCCCGAGCTGATGA
GCGCCTTGATCGAGGCACAGTCGGCGATAGAGCCGGCGCAGCTCCAGTAC
ATGCAGTTCCACGCCCGGAGCATGGACATGActgaggaggcgatggaggt
aGGCGGGTGGGGCGCGGCtcggggcgagagagggaggtggttcGAGGGGA
GCCAAGGGGCGTGTactcttcttttctcatGACAGGACACGTCACGACAT
TGCGTAAAATCGCACGTCTTACCCCATTCATTGATGCCAACGAGCCGCCC
TTACACGTCCTTgatccccatcctcccgtcCCATACCAGCAACTCCGCTA
CGGTCTCTCTCGTAGCGGCCCCCTTCAAGAAGCCCTCGACATCTGCATGA
AAGAACTcgacggcccctccctctcccggcttatgccctccctcctcctc
caactccggTCTGGCGTCGGCCTCAACACGCGCTGTTGCGCCGCCAATTT
AGTCCTGGTCCTGAGCACCCGCTTCCGGCCCGAGCTCAAAGtccatctcc
ccgccctccttcgcgtccttgCCGCCGGGGCCCTGGCTGAGCGGAGCAGC
ACCGCCCagcgctttttcctctctgccctcgcCGGCGTGGCCAAGCTGGc
tccggggggggaagaggtccGGCGCGCgatcctccgcctgctccgaGAGT
ACCGACGGGTAGCAGACTTGGCCACGCATCGATCGCAACGACTCCCCGTG
GTCTTGGCGCTTCGACAGCTTTGCAcggccgcgggggagggccttgagGA
AGCGGCGTGGGCGGCGGTGTTGCCCTTGGCCTACGTCGGCCgctttgagg
aagaggaaggaggggagggcgaggtacGGAAAGCGTGGCAGGAGATCTGG
ATGGAGGGCTGTGCGGCGCTGgggaaaggtggagggaacACGACCAAAGC
CCTGGGTGATGAGCTGTGTACagaggtggaaagggagctGAGGTCGTCGT
CgtggtcggggaggagggccgctTTGAAGGCCCTGGCCTCTCTGAGCGAG
GGCCTGGGCCGCGGAGGGCTGAGGCTGCACGCGAGGAGGCTGGTGGGGGA
GCTGCTGGACTTACTGCCAGGGCGGttgtgggaagggaaggacgaggtgc
TGCGGGCGCTGGTGAAGGTAGTAGTGGCCTGTCCGGGGCTGCTtcgagaa
ggggggggggggaaggatggtTGTTCTGGGAGgagtcgggggggggggca
gggagagggtaTTTCCCTCCAGGGCTGTTGA

Coding sequence (CDS) from alignment at KK037254.1:175855..178535+

>rna9562 ID=rna9562|Name=rna9562|organism=Nannochloropsis gaditana|type=CDS|length=4980bp|location=Sequence derived from alignment at KK037254.1:175855..178535+ (Nannochloropsis gaditana)
ATGGGAGCGGTCCGTGACGACGAATATCAGTTCGCGGTGGgacaggccct
ggcggccttggccttggGAGGGGACGTATGTGTATTTGCGTCGGTGTGGG
AGGGTGttgtggaggggaaggtgagagacAACAGCCCGCACGTTCGGGCC
GCTGCCACCCTGTggttgctggtgctgctctgggaggcggccgcggcctc
gGCTAGGGAGGGCGACATGGCGCGCGAGGTGCAGGTGCAAGAGAGCCACG
ACGCGACGGGGGCCCAGAGCGGGGCGGTGCAGGCGTCCGACGCATCGATT
CCCGCGGCGCAGACCGAGACCGACACGACCGCTcttctgtccctcccgcg
cctcttGGAGGCACAGCAGGTCCTCGTCACGCTCCTGCGGGACAAGTCGG
AGCTGGGACAGGAGGCAAGCGGGAAGGCCTTGGGTGTGCTTTGCAGCCTC
GCCGGGCACGGCCCCcaggtctcctcctctaccatcccctccactgcccc
ctccccgagCACGGCTCTTCAAGAGCTGACCAatgccctcgtcctcctcc
tccgcggtccctccgccaccgccaacCCCACCCACCTGGAGCTCAacacg
ccttcctcccagctcccccccatccagACCAACATGGACGTGGGCACTCT
CAACCCCTTCCGCGAGCTCTGTGCCATGGCCACCGACCTCGGACAACCAC
AGCTCCTTTACTACTTcctggccctcccctccacccatccctcctggGCC
GGGCGCCGCGCCGGGCTGTACGCGAAGGGGACCCCCGGCcccgcggggga
gggcagagaggaggagctccagCGTGCGCTCATGCCTCTACTCCCCCGTT
TGGTCCCTCGTCTCTACCGCGCCCGCTTCGACCCCACCCAGGCTGTCCGT
CAGGCAATGGAGCCGGTCTGGAAGAGTGTGCttgcagcggcggcagtTGC
CGAAGGGGACGTAGAGGCGACCGGGCAGGGTagcgagcgaggggggagtg
gcagtgggaagaaggtggtgaaAAAGTATTTGGATCCCATCCTGGACGAC
TTGTGTGAGGCTGCGGGGAGCCGTAAATGGCGAGAACGTCAGGCAGCGGT
GGCGGGCCTAGGAGAATTGATGCCGGGGCGGACGTTCAAGGAGGTAAGAG
GGAGACTGGAAAGACTGTGGATCATTGGCTTCCGCGCACTGGACGATTTG
AAGGAGTCAGTGCAGATGGCGGGCATGGACCTGGCCAAAGGCCTGCTGCA
GATGACGGGCAGGTTGAGCAACACGCAGGAGAGTCccgcggcggaggtgg
aggaggtggtgcgaGTGATACTTCCGCTTTTGCTCTCGCAGGGGCTGCCG
AGCAAGGCAAAAGAGGTGCAGGGGGTGGCGGTCTTGGTGCTTCTGAGGGT
GGTCAAAGGGGCGGGCGCATGTCTGAGACCCTACTTGCCCGAGCTGATGA
GCGCCTTGATCGAGGCACAGTCGGCGATAGAGCCGGCGCAGCTCCAGTAC
ATGCAGTTCCACGCCCGGAGCATGGACATGActgaggaggcgatggagCA
ACTCCGCTACGGTCTCTCTCGTAGCGGCCCCCTTCAAGAAGCCCTCGACA
TCTGCATGAAAGAACTcgacggcccctccctctcccggcttatgccctcc
ctcctcctccaactccggTCTGGCGTCGGCCTCAACACGCGCTGTTGCGC
CGCCAATTTAGTCCTGGTCCTGAGCACCCGCTTCCGGCCCGAGCTCAAAG
tccatctccccgccctccttcgcgtccttgCCGCCGGGGCCCTGGCTGAG
CGGAGCAGCACCGCCCagcgctttttcctctctgccctcgcCGGCGTGGC
CAAGCTGGctccggggggggaagaggtccGGCGCGCgatcctccgcctgc
tccgaGAGTACCGACGGGTAGCAGACTTGGCCACGCATCGATCGCAACGA
CTCCCCGTGGTCTTGGCGCTTCGACAGCTTTGCAcggccgcgggggaggg
ccttgagGAAGCGGCGTGGGCGGCGGTGTTGCCCTTGGCCTACGTCGGCC
gctttgaggaagaggaaggaggggagggcgaggtacGGAAAGCGTGGCAG
GAGATCTGGATGGAGGGCTGTGCGGCGCTGgggaaaggtggagggaacAC
GACCAAAGCCCTGGGTGATGAGCTGTGTACagaggtggaaagggagctGA
GGTCGTCGTCgtggtcggggaggagggccgctTTGAAGGCCCTGGCCTCT
CTGAGCGAGGGCCTGGGCCGCGGAGGGCTGAGGCTGCACGCGAGGAGGCT
GGTGGGGGAGCTGCTGGACTTACTGCCAGGGCGGttgtgggaagggaagg
acgaggtgcTGCGGGCGCTGGTGAAGGTAGTAGTGGCCTGTCCGGGGCTG
CTtcgagaaggggggggggggaaggatggtTGTTCTGGGAGgagtcgggg
gggggggcagggagagggtaTTTCCCTCCAGGGCTGTTGAATGGGAGCGG
TCCGTGACGACGAATATCAGTTCGCGGTGGgacaggccctggcggccttg
gccttggGAGGGGACGTATGTGTATTTGCGTCGGTGTGGGAGGGTGttgt
ggaggggaaggtgagagacAACAGCCCGCACGTTCGGGCCGCTGCCACCC
TGTggttgctggtgctgctctgggaggcggccgcggcctcgGCTAGGGAG
GGCGACATGGCGCGCGAGGTGCAGGTGCAAGAGAGCCACGACGCGACGGG
GGCCCAGAGCGGGGCGGTGCAGGCGTCCGACGCATCGATTCCCGCGGCGC
AGACCGAGACCGACACGACCGCTcttctgtccctcccgcgcctcttGGAG
GCACAGCAGGTCCTCGTCACGCTCCTGCGGGACAAGTCGGAGCTGGGACA
GGAGGCAAGCGGGAAGGCCTTGGGTGTGCTTTGCAGCCTCGCCGGGCACG
GCCCCcaggtctcctcctctaccatcccctccactgccccctccccgagC
ACGGCTCTTCAAGAGCTGACCAatgccctcgtcctcctcctccgcggtcc
ctccgccaccgccaacCCCACCCACCTGGAGCTCAacacgccttcctccc
agctcccccccatccagACCAACATGGACGTGGGCACTCTCAACCCCTTC
CGCGAGCTCTGTGCCATGGCCACCGACCTCGGACAACCACAGCTCCTTTA
CTACTTcctggccctcccctccacccatccctcctggGCCGGGCGCCGCG
CCGGGCTGTACGCGAAGGGGACCCCCGGCcccgcgggggagggcagagag
gaggagctccagCGTGCGCTCATGCCTCTACTCCCCCGTTTGGTCCCTCG
TCTCTACCGCGCCCGCTTCGACCCCACCCAGGCTGTCCGTCAGGCAATGG
AGCCGGTCTGGAAGAGTGTGCttgcagcggcggcagtTGCCGAAGGGGAC
GTAGAGGCGACCGGGCAGGGTagcgagcgaggggggagtggcagtgggaa
gaaggtggtgaaAAAGTATTTGGATCCCATCCTGGACGACTTGTGTGAGG
CTGCGGGGAGCCGTAAATGGCGAGAACGTCAGGCAGCGGTGGCGGGCCTA
GGAGAATTGATGCCGGGGCGGACGTTCAAGGAGGTAAGAGGGAGACTGGA
AAGACTGTGGATCATTGGCTTCCGCGCACTGGACGATTTGAAGGAGTCAG
TGCAGATGGCGGGCATGGACCTGGCCAAAGGCCTGCTGCAGATGACGGGC
AGGTTGAGCAACACGCAGGAGAGTCccgcggcggaggtggaggaggtggt
gcgaGTGATACTTCCGCTTTTGCTCTCGCAGGGGCTGCCGAGCAAGGCAA
AAGAGGTGCAGGGGGTGGCGGTCTTGGTGCTTCTGAGGGTGGTCAAAGGG
GCGGGCGCATGTCTGAGACCCTACTTGCCCGAGCTGATGAGCGCCTTGAT
CGAGGCACAGTCGGCGATAGAGCCGGCGCAGCTCCAGTACATGCAGTTCC
ACGCCCGGAGCATGGACATGActgaggaggcgatggagCAACTCCGCTAC
GGTCTCTCTCGTAGCGGCCCCCTTCAAGAAGCCCTCGACATCTGCATGAA
AGAACTcgacggcccctccctctcccggcttatgccctccctcctcctcc
aactccggTCTGGCGTCGGCCTCAACACGCGCTGTTGCGCCGCCAATTTA
GTCCTGGTCCTGAGCACCCGCTTCCGGCCCGAGCTCAAAGtccatctccc
cgccctccttcgcgtccttgCCGCCGGGGCCCTGGCTGAGCGGAGCAGCA
CCGCCCagcgctttttcctctctgccctcgcCGGCGTGGCCAAGCTGGct
ccggggggggaagaggtccGGCGCGCgatcctccgcctgctccgaGAGTA
CCGACGGGTAGCAGACTTGGCCACGCATCGATCGCAACGACTCCCCGTGG
TCTTGGCGCTTCGACAGCTTTGCAcggccgcgggggagggccttgagGAA
GCGGCGTGGGCGGCGGTGTTGCCCTTGGCCTACGTCGGCCgctttgagga
agaggaaggaggggagggcgaggtacGGAAAGCGTGGCAGGAGATCTGGA
TGGAGGGCTGTGCGGCGCTGgggaaaggtggagggaacACGACCAAAGCC
CTGGGTGATGAGCTGTGTACagaggtggaaagggagctGAGGTCGTCGTC
gtggtcggggaggagggccgctTTGAAGGCCCTGGCCTCTCTGAGCGAGG
GCCTGGGCCGCGGAGGGCTGAGGCTGCACGCGAGGAGGCTGGTGGGGGAG
CTGCTGGACTTACTGCCAGGGCGGttgtgggaagggaaggacgaggtgcT
GCGGGCGCTGGTGAAGGTAGTAGTGGCCTGTCCGGGGCTGCTtcgagaag
gggggggggggaaggatggtTGTTCTGGGAGgagtcgggggggggggcag
ggagagggtaTTTCCCTCCAGGGCTGTTGA

Synonyms

Publications