rna9556, rna9556 (mRNA) Nannochloropsis gaditana

Overview
Namerna9556
Unique Namerna9556
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length869
Alignment locationKK037254.1:164602..166125 -

Link to JBrowse

Properties
Property NameValue
Productsuccinate dehydrogenase cytochrome b subunit
Orig transcript idgnl|cribi|Naga_100319g6.4366.mrna
Orig protein idgnl|cribi|Naga_100319g6.4366
GeneSDH3
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:164602..166125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SDH3gene9278Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9556rna9556-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21144.1cds9525Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9556 ID=rna9556|Name=rna9556|organism=Nannochloropsis gaditana|type=mRNA|length=869bp
TTCCGAGCTATAGTCACTTTAAATCTCAGCAGTGTACTGCTTGTAGGACT
TCTCTCAAATTGCAACCTTCCTCCATGCTACAGCAGTGCACTACGCTGGG
GCGAAGACAAAGGACCCGTGGTGCTTGGAGCTCCCGTTGGAAAGCGTAAT
AAGTTCCGTAATTGCCTTATTTTTCTTGCGGGTAAAAGAGGCAGCAAGGG
CAAGGATCCTGTATTAAACAGATATCCCTCCACAAGGCGTTCGACATCCC
GGTGACATGCATGCTAATTTTTTACGCAACAATGCTTCAGCATCAGCGGG
CTCTGGGCACTTCGAGCCAGCGCCTCAGCACGCTGGCGGAGATGCCGCAA
ATGCAGTAGCACGCGTGAATGCGAAACTAGACGAATTGGACCGTGTGCTC
CAAGATGTTCGTCAAAAAGACATCAAACGCGTGGAGGAAGAAGAGAAAGC
TAGGCTCATTGAGAAAGTTGGAACCAAAGCGATGGAACTGAACAAGGCTC
GCGAAGAACTCGCTCAGACTCAACTCCGCAAGGCGCAGGCTGAAGAGAGG
CTTCGAGCACATGAGCTCCTGGTGCAGATCCACAAGACGATCGAGAATGC
CTTTGTGTCTTCAGGGCGAAAATCCGTCTACCAGAATCAAAACCGGTAGC
ATACAGAGGTGGACAGAGATTGTGTGGAGCGGTACTTCGGGAGGAAGCGT
GTTGGCCAAGCAATGATCACGGAAATATGTCTTCCTATGTGGTGAGATGG
CATTAGGAATACTCATGCATCAAGGTAGTATAATCTAACATGCCGACTGC
CTAGCCTCCATTCGTCCCTGTAATGTCTCTTACTGTAAAAAGGAAATGGA
TTATAACGGCTCGTTCTTC
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protein sequence of rna9556

>rna9556-protein ID=rna9556-protein|Name=rna9556|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MLLRTAAASSRKAVACCMFPKAALGRQGYTKVQVLQAAYLSTASKETYTE
RQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGA
DVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFFWDNNPNFLNNKG
VAEASYILLGSTVAISLVSGFVTLAPSSSDGKK
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mRNA from alignment at KK037254.1:164602..166125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9556 ID=rna9556|Name=rna9556|organism=Nannochloropsis gaditana|type=mRNA|length=1524bp|location=Sequence derived from alignment at KK037254.1:164602..166125- (Nannochloropsis gaditana)
TTACTCTAATCTCGCATCGTTATCATTGTATCTCATGAAGGTAGACCCAC
AGCACAAACATGCTTCTACGCACTGCTGCAGCTTCAAGTCGCAAGGCCGT
TGCCTGTTGCATGTTTCCCAAAGCTGCTTTGGGCCGACAGGGCTACACCA
AGGTTCAGGTAAGTAAGTGGCAGACCACAGCTACGAGAATGACCCAAAGA
GATAGGCAACGCGATTGTAGTATGTCTCATGAGATTCTCTACGAGACGCG
TGACTGAGCGGGCTCGACGTAACTACACTGATTCACGCCGTGGTGCGGGT
GTAGTCTCGGCAGTGCGAGAATGGCCCTTGCTGCAAGCCAAATGTTAGAA
GTACTTAAAATTTGGAAATTTGAATGCACGTGTAGTCGGAAGATGCTGGA
AGGTCTACATTTGGACGTAGAAGGCCAGCACTCGGATCGGACCGTACGGC
ATGAATCTACTTGCCCCGCCTAAGTGCCAAATCATTCTCCTTCACAGGTC
TTGCAAGCCGCCTATTTGAGTACTGCAAGTAAAGAGACTTACACCGAACG
ACAAGCTAGGACAGGTTAGTTCTATTAGTCTGCAGGCACATGTACATCTT
GTCATGTCGTTTTCAAATCGCTCGTTCTTTAATTGACCTGTAAATTCCCG
CTATGTGCGCGCGAGAGGAATTCGTTTTGTGCGGATTTCACAACGCATAA
ATTATGCATCAAGTCGTTTGTTGGTTCTTCGAATGTCTCTGAAATGACGT
CGTCCCGGTCCTATCTTCCTCCGCACGCGTGTCCTCGCAGGGCGCCCCGT
CTCTCCGCATGTGACCATCTACAAATTCCCAATCACCGCGCTCACCTCCA
TCTCTACGCGTGTGACGGGTGGCGTCTTGACTGTCGGACTGACTGGTATC
TCTTTGCTCGCCCTGGGCGGGGCAGATGTTCCGATGCTCATGTCGAGCCT
GGGGAACTCTATGGTGGGGGTACCGGCGAAGGTCTTATTCGGCTTTCCTT
TGATCTTCCATTACGGCTCAGGATTGCGGCACTTTGTACGTTTGGGTTTT
GGATAGGGTGTGCATGCAGGCAGGAAGGATCATTACGTAGAAGCTTTGAG
GTGCACTAGGTTGAATGCAGGCACGTGTCGTCCTTCCTCAGCCTGCATGA
AGGGCGCTGTCAATCTTTCACACGTGTCATGCGCCCATTGATTCATCATA
ACTCACTAATTTTTATCTTTCTATGTATCCGTGTGATCGTAGTTTTGGGA
CAACAATCCCAACTTTCTGAACAACAAGGGGGTCGCTGAAGCCTCCTACA
TCCTCCTCGGCTCAACCGTCGCGATATCGTTGGTATCTGGATTTGTCACT
CTGGCACCCTCCTCGTCGGACGGAAAGAAATAAACTTTCACAGTTTTGAT
TTTTGTTGAGTGGGGTGTGCGGAAAATGCGGCTATTCCAGGCGAATGATA
GACAGGGATCCTGGCAAACATATTTGTTTAAATGGAAGAAAGAAAGGCCG
ATGAATGAGTCAAGGATGAAGCAC
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Coding sequence (CDS) from alignment at KK037254.1:164602..166125-

>rna9556 ID=rna9556|Name=rna9556|organism=Nannochloropsis gaditana|type=CDS|length=2208bp|location=Sequence derived from alignment at KK037254.1:164602..166125- (Nannochloropsis gaditana)
TTTTGGGACAACAATCCCAACTTTCTGAACAACAAGGGGGTCGCTGAAGC
CTCCTACATCCTCCTCGGCTCAACCGTCGCGATATCGTTGGTATCTGGAT
TTGTCACTCTGGCACCCTCCTCGTCGGACGGAAAGAAATAAGGCGCCCCG
TCTCTCCGCATGTGACCATCTACAAATTCCCAATCACCGCGCTCACCTCC
ATCTCTACGCGTGTGACGGGTGGCGTCTTGACTGTCGGACTGACTGGTAT
CTCTTTGCTCGCCCTGGGCGGGGCAGATGTTCCGATGCTCATGTCGAGCC
TGGGGAACTCTATGGTGGGGGTACCGGCGAAGGTCTTATTCGGCTTTCCT
TTGATCTTCCATTACGGCTCAGGATTGCGGCACTTTGTCTTGCAAGCCGC
CTATTTGAGTACTGCAAGTAAAGAGACTTACACCGAACGACAAGCTAGGA
CAGATGCTTCTACGCACTGCTGCAGCTTCAAGTCGCAAGGCCGTTGCCTG
TTGCATGTTTCCCAAAGCTGCTTTGGGCCGACAGGGCTACACCAAGGTTC
AGTTTTGGGACAACAATCCCAACTTTCTGAACAACAAGGGGGTCGCTGAA
GCCTCCTACATCCTCCTCGGCTCAACCGTCGCGATATCGTTGGTATCTGG
ATTTGTCACTCTGGCACCCTCCTCGTCGGACGGAAAGAAATAAGGCGCCC
CGTCTCTCCGCATGTGACCATCTACAAATTCCCAATCACCGCGCTCACCT
CCATCTCTACGCGTGTGACGGGTGGCGTCTTGACTGTCGGACTGACTGGT
ATCTCTTTGCTCGCCCTGGGCGGGGCAGATGTTCCGATGCTCATGTCGAG
CCTGGGGAACTCTATGGTGGGGGTACCGGCGAAGGTCTTATTCGGCTTTC
CTTTGATCTTCCATTACGGCTCAGGATTGCGGCACTTTGTCTTGCAAGCC
GCCTATTTGAGTACTGCAAGTAAAGAGACTTACACCGAACGACAAGCTAG
GACAGATGCTTCTACGCACTGCTGCAGCTTCAAGTCGCAAGGCCGTTGCC
TGTTGCATGTTTCCCAAAGCTGCTTTGGGCCGACAGGGCTACACCAAGGT
TCAGTTTTGGGACAACAATCCCAACTTTCTGAACAACAAGGGGGTCGCTG
AAGCCTCCTACATCCTCCTCGGCTCAACCGTCGCGATATCGTTGGTATCT
GGATTTGTCACTCTGGCACCCTCCTCGTCGGACGGAAAGAAATAAGGCGC
CCCGTCTCTCCGCATGTGACCATCTACAAATTCCCAATCACCGCGCTCAC
CTCCATCTCTACGCGTGTGACGGGTGGCGTCTTGACTGTCGGACTGACTG
GTATCTCTTTGCTCGCCCTGGGCGGGGCAGATGTTCCGATGCTCATGTCG
AGCCTGGGGAACTCTATGGTGGGGGTACCGGCGAAGGTCTTATTCGGCTT
TCCTTTGATCTTCCATTACGGCTCAGGATTGCGGCACTTTGTCTTGCAAG
CCGCCTATTTGAGTACTGCAAGTAAAGAGACTTACACCGAACGACAAGCT
AGGACAGATGCTTCTACGCACTGCTGCAGCTTCAAGTCGCAAGGCCGTTG
CCTGTTGCATGTTTCCCAAAGCTGCTTTGGGCCGACAGGGCTACACCAAG
GTTCAGTTTTGGGACAACAATCCCAACTTTCTGAACAACAAGGGGGTCGC
TGAAGCCTCCTACATCCTCCTCGGCTCAACCGTCGCGATATCGTTGGTAT
CTGGATTTGTCACTCTGGCACCCTCCTCGTCGGACGGAAAGAAATAAGGC
GCCCCGTCTCTCCGCATGTGACCATCTACAAATTCCCAATCACCGCGCTC
ACCTCCATCTCTACGCGTGTGACGGGTGGCGTCTTGACTGTCGGACTGAC
TGGTATCTCTTTGCTCGCCCTGGGCGGGGCAGATGTTCCGATGCTCATGT
CGAGCCTGGGGAACTCTATGGTGGGGGTACCGGCGAAGGTCTTATTCGGC
TTTCCTTTGATCTTCCATTACGGCTCAGGATTGCGGCACTTTGTCTTGCA
AGCCGCCTATTTGAGTACTGCAAGTAAAGAGACTTACACCGAACGACAAG
CTAGGACAGATGCTTCTACGCACTGCTGCAGCTTCAAGTCGCAAGGCCGT
TGCCTGTTGCATGTTTCCCAAAGCTGCTTTGGGCCGACAGGGCTACACCA
AGGTTCAG
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Synonyms
Publications