rna9554, rna9554 (mRNA) Nannochloropsis gaditana

Overview
Namerna9554
Unique Namerna9554
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length867
Alignment locationKK037254.1:159761..160996 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100319g8.4372.mrna
Orig protein idgnl|cribi|Naga_100319g8.4372
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:159761..160996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100319g8gene9276Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9554rna9554-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21150.1cds9523Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9554 ID=rna9554|Name=rna9554|organism=Nannochloropsis gaditana|type=mRNA|length=867bp
ATGATCCCTTACTACCAAGGATACCAGCATCGTGGAGACACGGATGATTC
GAACGACGGAAGTGCGGGTAGCGAGGATCGTCAGGGCGGGCAGGGGGCAG
AGGAGCGGCAGGTGGAAGCCCATTCCGGCCCCCTCATGATGCTACCGCCT
TCTCTTCCTGCTGAACCCACCGTACCATCCCGCGACATGGAGGCGTTTAA
CAGGCTCTACGCCTTGCACGAAGAGATCGGCCGGGGGGCCTTCAGCGTGG
TCCATCGGTGCACGAATCGGATCACCGGGGAGGATTTCGCCGTCAAGCTC
ATGGACCTCCGGCCCCTCCAGCTCCGGGAGAATTTCGACCAGGCACGACT
TCGGCGCGAGGTGGAGATTATGCAGCGGCTGGAGCACCCCCACATCATCC
GCTTGGAGGGAGTTTTCGAGGACGCCAGCACCCTCGTCCTCGTCTTGGAA
TATGCCCGCGGCACCGAGCTCTTCGACTCCATCCTCCAGAAGAAGCGCTA
CACGGAGGAAGAGGCGCGGCCCATCTTTGTCCAGGTCGCCCATGCCCTGG
CCTACCTGCACCGCCTCCACATCGTGCATCGGGACGTGAAGCCCGAGAAC
GTCATCCTACTCGACGCCCTCTCCCCCGAGGGCTTCTACCCCTTCGCCAA
GCTCCTCGACTTTGGCCTCTCCAAGATGATCGGCCAGGACGACGGCTCTG
CCGCCCGCACTTTCGTGGGCACGCCCTGCTACCTGGCCCCGGAGGTGGAG
GCCCGTGCCTACGGGCGGGGGGGCGGCTATGGGACCAAGGTGGACTGCTG
GAGCCTGGGGGCGGTGCTGTACGTGATGCTCGTGGCCCGCTTCCCGGAGA
CCTGCTCCGGTGCCTGA
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protein sequence of rna9554

>rna9554-protein ID=rna9554-protein|Name=rna9554|organism=Nannochloropsis gaditana|type=polypeptide|length=170bp
MRVISRVFSGAMMSRFVRPMLSWNRDAVRLTAYTFAVSARAAITTAFSGP
CAAAGDREHHSLLVHWQQQRRHRWAGVAEFDGSKQAAMQFLDEGAQFEGL
VKRWDARKYYIKPFVQRKQRYNRWVRRRSMEKINRILERVRYEKANARST
NPRLAAILGSKEKKHTPVEG
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mRNA from alignment at KK037254.1:159761..160996-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9554 ID=rna9554|Name=rna9554|organism=Nannochloropsis gaditana|type=mRNA|length=1236bp|location=Sequence derived from alignment at KK037254.1:159761..160996- (Nannochloropsis gaditana)
ACTCCCTCGTCCATCGTGTGATGCGCGTCATTTCCAGGGTCTTCTCGGGA
GCCATGATGTCGCGCTTTGTCCGCCCCATGCTCTCCTGGAATCGAGACGC
CGTACGGCTTACGGCCTACACCTTTGCGGTCAGTGCCCGTGCCGCTATCA
CGACGGCCTTCTCTGGACCATGTGCAGCAGCGGGCGATCGGGAGCACCAT
TCTCTCCTAGTGCACTGGCAGCAGCAGCGACGGCATCGGTGGGCGGGCGT
GGCGGAGTTTGACGGTAGCAAACAGGCAGTAAGTGGGTGACGCGGTGGGG
AAAAGGCACTGCCTTTTCCAAGAGGGAGGAAGGAATAGACAATCGAAAAG
GCATGACTTTCCATCTGAACACCATCGAAAGGCCGTGTACTCAGAGTCAT
ACATTGGGGTCATGGGACAGGCCATGCAGTTCTTGGACGAGGGGGCGCAA
TTCGAGGGATTGGTAAAGCGGTGGGACGCCCGCAAGGTACGTGCCAGCTT
TCAAGAATCACGAGATAGTAGATGGTGAGCACCCCTTGTCTCTCCGGAAC
CAGCAATCTCACTTTCGTCGCTTCTTTTCCACTCAAACTCTTTTCGGTCG
CTCTCTCAATTCCTGGTCAGTACTACATAAAGCCTTTCGTACAGCGCAAG
CAACGGTACAACCGTTGGGTCCGCCGGCGCTCTATGGAAAAAATCAACCG
TATCCTGGAACGAGTCCGCTATGAGAAAGCCAAGTGAGTCCGGGTCGGGA
GACGTAACGGGGTGAACATAATGTATTCTGGATCCTCGGGGAGGCTCTAT
CGCTTCTTGTCAGGAAGGTCTTTCGTCTGCCTCAGATTGTGAGCGGGCCC
TAATGCTTCTTCGTCGGTATCTCTTCTAGGAGTGTCTAAAACACAAATCT
TTCAGAAATTTAGAAACATAGGGAGAGGTGGGAAAGACGAAGATGCAGGA
TGCTAACTTAATCCCAACCTTCCTCTTCCCTGACACATCAGTGCCAGATC
CACAAATCCTCGGCTTGCCGCCATTCTAGGTAGCAAAGAAAAGAAACATA
CACCCGTGGAAGGCTGAAAAGATGACGGCCCAGCCATCAGGAGGAATCAC
GATGCTTGTGAGTTGTCATGGAGACCAACGCTTTGGGTGTTGACGAAAAT
AATGTACATGGACGCACGCGGAGGGATCAAACCGACAACGCCGGGAAAGG
AGAAAAGAAAAAGAAAAAAACGAGTGCCTTATAACC
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Coding sequence (CDS) from alignment at KK037254.1:159761..160996-

>rna9554 ID=rna9554|Name=rna9554|organism=Nannochloropsis gaditana|type=CDS|length=2052bp|location=Sequence derived from alignment at KK037254.1:159761..160996- (Nannochloropsis gaditana)
TGCCAGATCCACAAATCCTCGGCTTGCCGCCATTCTAGGTAGCAAAGAAA
AGAAACATACACCCGTGGAAGGCTGATACTACATAAAGCCTTTCGTACAG
CGCAAGCAACGGTACAACCGTTGGGTCCGCCGGCGCTCTATGGAAAAAAT
CAACCGTATCCTGGAACGAGTCCGCTATGAGAAAGCCAAGCCATGCAGTT
CTTGGACGAGGGGGCGCAATTCGAGGGATTGGTAAAGCGGTGGGACGCCC
GCAAGATGCGCGTCATTTCCAGGGTCTTCTCGGGAGCCATGATGTCGCGC
TTTGTCCGCCCCATGCTCTCCTGGAATCGAGACGCCGTACGGCTTACGGC
CTACACCTTTGCGGTCAGTGCCCGTGCCGCTATCACGACGGCCTTCTCTG
GACCATGTGCAGCAGCGGGCGATCGGGAGCACCATTCTCTCCTAGTGCAC
TGGCAGCAGCAGCGACGGCATCGGTGGGCGGGCGTGGCGGAGTTTGACGG
TAGCAAACAGGCATGCCAGATCCACAAATCCTCGGCTTGCCGCCATTCTA
GGTAGCAAAGAAAAGAAACATACACCCGTGGAAGGCTGATACTACATAAA
GCCTTTCGTACAGCGCAAGCAACGGTACAACCGTTGGGTCCGCCGGCGCT
CTATGGAAAAAATCAACCGTATCCTGGAACGAGTCCGCTATGAGAAAGCC
AAGCCATGCAGTTCTTGGACGAGGGGGCGCAATTCGAGGGATTGGTAAAG
CGGTGGGACGCCCGCAAGATGCGCGTCATTTCCAGGGTCTTCTCGGGAGC
CATGATGTCGCGCTTTGTCCGCCCCATGCTCTCCTGGAATCGAGACGCCG
TACGGCTTACGGCCTACACCTTTGCGGTCAGTGCCCGTGCCGCTATCACG
ACGGCCTTCTCTGGACCATGTGCAGCAGCGGGCGATCGGGAGCACCATTC
TCTCCTAGTGCACTGGCAGCAGCAGCGACGGCATCGGTGGGCGGGCGTGG
CGGAGTTTGACGGTAGCAAACAGGCATGCCAGATCCACAAATCCTCGGCT
TGCCGCCATTCTAGGTAGCAAAGAAAAGAAACATACACCCGTGGAAGGCT
GATACTACATAAAGCCTTTCGTACAGCGCAAGCAACGGTACAACCGTTGG
GTCCGCCGGCGCTCTATGGAAAAAATCAACCGTATCCTGGAACGAGTCCG
CTATGAGAAAGCCAAGCCATGCAGTTCTTGGACGAGGGGGCGCAATTCGA
GGGATTGGTAAAGCGGTGGGACGCCCGCAAGATGCGCGTCATTTCCAGGG
TCTTCTCGGGAGCCATGATGTCGCGCTTTGTCCGCCCCATGCTCTCCTGG
AATCGAGACGCCGTACGGCTTACGGCCTACACCTTTGCGGTCAGTGCCCG
TGCCGCTATCACGACGGCCTTCTCTGGACCATGTGCAGCAGCGGGCGATC
GGGAGCACCATTCTCTCCTAGTGCACTGGCAGCAGCAGCGACGGCATCGG
TGGGCGGGCGTGGCGGAGTTTGACGGTAGCAAACAGGCATGCCAGATCCA
CAAATCCTCGGCTTGCCGCCATTCTAGGTAGCAAAGAAAAGAAACATACA
CCCGTGGAAGGCTGATACTACATAAAGCCTTTCGTACAGCGCAAGCAACG
GTACAACCGTTGGGTCCGCCGGCGCTCTATGGAAAAAATCAACCGTATCC
TGGAACGAGTCCGCTATGAGAAAGCCAAGCCATGCAGTTCTTGGACGAGG
GGGCGCAATTCGAGGGATTGGTAAAGCGGTGGGACGCCCGCAAGATGCGC
GTCATTTCCAGGGTCTTCTCGGGAGCCATGATGTCGCGCTTTGTCCGCCC
CATGCTCTCCTGGAATCGAGACGCCGTACGGCTTACGGCCTACACCTTTG
CGGTCAGTGCCCGTGCCGCTATCACGACGGCCTTCTCTGGACCATGTGCA
GCAGCGGGCGATCGGGAGCACCATTCTCTCCTAGTGCACTGGCAGCAGCA
GCGACGGCATCGGTGGGCGGGCGTGGCGGAGTTTGACGGTAGCAAACAGG
CA
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Synonyms
Publications