rna954, rna954 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna954
Unique Name	rna954
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	681
Alignment location	CM002456.1:821073..824227 +

Link to JBrowse

Properties


Property Name	Value
Product	non-ribosomal peptide synthetase
Orig transcript id	gnl\|cribi\|Naga_100124g1.8325.mrna
Orig protein id	gnl\|cribi\|Naga_100124g1.8325
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:821073..824227 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100124g1	gene917	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna954	rna954-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29704.1	cds954	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:821073..824227+
coding sequence from alignment at CM002456.1:821073..824227+

mRNA sequence

>rna954 ID=rna954|Name=rna954|organism=Nannochloropsis gaditana|type=mRNA|length=681bp
ATGTCGTTCCCTTGGTCAATCCGTTCCGAGAATTCGTCCGATGAGATAGT
GTTCGAGGTGATTTGGGAGGAGGTGGCGACCTCTCCTGGTAGTAAGTCTG
ACGCGACGCTGTTTCTGGGCGTGACGGAAGGTTCGCGGGAGCAGCTACTC
AGAATAAGCTCGGAGATGGCATCGGTGACATTGGTGGAGCAGTGTTCTTG
TGAGCATCTGGAAGCCATGGACTGCACACGCGAGACTGTGCGGGAGTATC
GTGCGGACCTGACCAATGCTGTGCACATGGCGGAGCTGACCAGCTTGGAG
TCGTGGACAGCAGTCGTATTGTTACCAAGCGACAAGAGCATGATGATCCG
ACAAAGTTTGGCTTTGGTGAAGGGGGCATTGTCGCCGAGCGCAGGCAAGA
GAAGCGTGTCATCGCTCTGGTTTGTGAGTGCAGGGGCATTGCCGGTAGGC
GAGGAAAGCGTAAAGGATGAGGCAAGCGCACGGCAATCGTGGTTGTCAGG
TTTCGTGAAGACAGTAGGGATTGAGCACGCAGAGCTGGGTGTGCGGCATG
TGGATGTACGATCCGATGACGACGGGGTGATTGACGATATAAGCCATTTG
CTGGGCGGTGCTATGTCATTGCCGGAGAAGGAGATGGAACGAGCAAGGAG
CAGATCTCTGCTTCGGAGCACTTTGGGGTAG

protein sequence of rna954

>rna954-protein ID=rna954-protein|Name=rna954|organism=Nannochloropsis gaditana|type=polypeptide|length=938bp
VEAPSNELQDGSVLDNFLYPSLHPYKYNAFSWQRPTDMLATEFGLGDTGK
FPPGKFLPDNGRAVMLTHEHVRNVIFTCIKDTLSDVPSLTDDTLLMDLQM
DSMGAVSFVTDVSSHLEETGIKLPPDFMFVHPSIGEMISGILSLASTTMQ
KDTGADRRSRKADLLPVQTRRHATSDYLENLPTQQGCPSSWLLTFYYFVA
MGYVSAVILFPGWLVLSRSFQYGLHLPVILGVLVLAPCAKLVYVTILLGL
VILSKKLILGNIKPNEHFPLASVKFVQYWAVTRLMSFANILVLGELKRTY
LLNTYYRLMGSRIGRDVLIDTVGITDPDMVIVHDGTVIGNGVLLLGHTIH
DGFITFGTIAIGQSCTIEPRAILKPEARVDHFTTIPALASVGRNQMQFQA
IGKTPRSASSDASGSHPAKSFWQAMLDSLGHVGGLFLTYALASSSLLVVN
AIASAMSDSQSQGGIMSALATLQLTSGLYLPFLPLFVGVDRDGFAEVLMM
ALTKYDVIGIIWIFPAFYLGYSCVLIAVTALVKWLLIGKTKPGTSIDKGR
TAWCKWFCDTLLEYSFRHTASLTLGTSFINFWLSILGAKIGWRACIRVCN
GIHDMPDSYRDPELIDVGKDVHVGDRAALITGVTCRATDGEKRGNVETTY
GVIKIGDRALIGMGSVILEGARIPAGTGVGALCCVTSKVSLKEGAMHMGN
PRPRPIYHISAEGLQDRKFSAMEWVWYFTFPLIQPLVITAVISVAGFFTC
LFSMLSFWEYTPASTPLMVAPFIYMIHGFVLCMIVVLLKWALLGRMVPSQ
RHRTYGLHYYTWNMVLMVQSIVHLHFTELLRGSPFYNVYFRWLGVHIERN
VFLEAVSIPDVDMIFLGEGSVVEQNVLLGGHSYEAPFLSRNRVHIGKKCV
VRPTAATLPEFRMEDGSELDCLQVGLKGMVVGRRDSID

mRNA from alignment at CM002456.1:821073..824227+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna954 ID=rna954|Name=rna954|organism=Nannochloropsis gaditana|type=mRNA|length=3155bp|location=Sequence derived from alignment at CM002456.1:821073..824227+ (Nannochloropsis gaditana)
ATGTTGAGGCTCCTTCTAATGAGCTTCAAGACGGGTCAGTATTGGATAAT
TTCCTCTATCCGTCCCTACATCCCTACAAGTACAATGCATTCAGCTGGCA
GCGACCGACGGACATGCTCGCGACCGAGTTTGGTCTGGGGGATACAGGAA
AGTTTCCCCCAGGAAAGTTTCTTCCAGACAATGGACGTGCGGTAATGTTG
ACGCATGAGCATGTTCGTAACGTGATCTTTACCTGCATCAAGGACACGCT
GAGTGATGTCCCCTCGTTGACGGATGATACCCTTCTTATGGACCTGCAGA
TGGACTCCATGGGCGCCGTATCCTTCGTGACAGACGTTTCTTCCCATCTC
GAGGAAACTGGAATAAAATTGCCTCCCGACTTCATGTTTGTGCATCCAAG
TATTGGTGAAATGATATCTGGCATTCTCAGTCTGGCAAGCACCACGATGC
AAAAAGATACTGGTGCAGACCGGAGAAGTCGTAAGGCGGACCTTTTACCT
GTTCAAACCCGCCGTCATGCTACGTCTGATTATCTAGAGAATTTGCCAAC
ACAGCAGGGGTGCCCAAGCTCATGGCTCCTAACTTTTTATTATTTTGTTG
CGATGGGGTATGTCTCTGCAGTCATACTCTTTCCTGGGTGGCTGGTCCTG
AGCCGCAGCTTTCAATATGGTCTTCATCTCCCTGTCATACTTGGTGTGTT
GGTACTGGCACCTTGCGCAAAGCTCGTCTATGTGACCATTCTGCTTGGTT
TGGTGATATTGAGTAAAAAGCTAATTTTGGGCAACATCAAGCCCAATGAA
CATTTCCCACTTGCAAGCGTCAAATTTGTGCAGTATTGGGCGGTCACAAG
GCTGATGAGTTTTGCGAACATTTTGGTGCTTGGAGAACTGAAGCGGACAT
ATTTGTTGAACACATATTACCGTTTAATGGGGTCACGGATCGGCCGAGAC
GTTCTTATTGACACCGTCGGGATCACTGACCCCGATATGGTAATCGTACA
CGATGGGACCGTCATTGGCAATGGGGTACTTCTACTTGGACATACGATCC
ATGACGGATTCATCACATTTGGCACGATTGCAATAGGTCAATCATGTACT
ATCGAGCCTCGAGCCATACTCAAACCGGAAGCGCGTGTCGATCATTTTAC
CACAATACCTGCTTTGGCAAGTGTGGGGAGGAATCAGATGCAGTTCCAAG
CAATTGGGAAAACGCCTCGCAGCGCTTCTTCAGATGCATCCGGCTCACAC
CCAGCCAAGAGCTTCTGGCAAGCGATGCTCGACAGTTTAGGGCACGTCGG
AGGACTTTTTTTAACATACGCTCTGGCATCTTCGTCATTGCTAGTTGTCA
ACGCCATTGCTTCAGCCATGTCGGATAGCCAAAGCCAAGGTGGAATTATG
TCGGCGTTGGCAACGCTTCAGCTAACGTCCGGGCTttaccttccctttct
tcctcttttcgtCGGAGTAGACCGCGACGGATTTGCTGAGGTCCTTATGA
TGGCGCTGACTAAGTATGACGTGATTGGGATTATTTGGATATTTCCAGCG
TTTTATCTGGGTTATTCTTGTGTATTGATTGCAGTTACTGCGCTTGTGAA
ATGGCTGCTTATAGGCAAGACGAAGCCCGGTACATCTATTGACAAGGGAC
GGACTGCTTGGTGCAAATGGTTTTGTGACACATTGTTGGAGTACTCTTTC
CGTCACACAGCGTCATTAACCTTGGGCACGTCATTTATCAATTTCTGGCT
GTCTATACTAGGCGCCAAGATTGGGTGGCGCGCATGCATTCGCGTTTGTA
ATGGGATCCATGACATGCCTGATTCATATCGAGACCCAGAGCTTATCGAT
GTGGGTAAGGATGTGCACGTTGGCGACCGAGCAGCCCTCATCACAGGAGT
CACTTGTCGTGCCACGGACGGAGAGAAACGAGGCAACGTGGAGACGACAT
ATGGAGTGATCAAAATAGGGGACCGCGCGCTCATTGGAATGGGCTCTGTG
ATACTTGAAGGGGCACGAATTCCTGCAGGGACGGGGGTGGGTGCGTTGTG
CTGCGTAACATCAAAGGTCTCGCTAAAAGAAGGCGCTATGCACATGGGCA
ATCCACGACCCCGCCCAATCTACCATATTTCCGCGGAGGGCTTACAAGAC
CGAAAATTTTCAGCGATGGAGTGGGTTTGGTACTTCACGTTTCCCTTAAT
ACAGCCATTGGTAATCACGGCGGTCATTTCTGTGGCCGGATTTTTCACGT
GCCTTTTCAGCATGCTGAGTTTCTGGGAATACACTCCAGCAAGTACGCCA
TTAATGGTTGCGCCTTTCATATACATGATCCATGGATTTGTGCTTTGCAT
GATTGTCGTGTTGCTCAAATGGGCACTTTTAGGCCGCATGGTTCCCTCAC
AAAGGCATCGTACTTACGGTTTGCACTACTACACCTGGAACATGGTGCTA
ATGGTACAGAGCATCGTACACCTTCATTTTACCGAGTTACTTCGCGGCAG
TCCATTTTACAACGTGTACTTTCGTTGGTTAGGAGTGCACATTGAACGGA
ATGTATTTTTGGAAGCAGTGTCCATCCCCGACGTGGATATGATTTTTcta
ggggagggaagtgtCGTAGAGCAAAATGTACTCTTGGGTGGGCATAGCTA
CGAGGcgccctttctttcccggAATCGCGTGCATATTGGAAAAAAATGTG
TTGTCCGGCCAACTGCCGCGACATTACCTGAGTTCAGAATGGAAGATGGT
TCAGAGCTTGATTGTCTTCAAGTGGGTCTGAAGGGCATGGTTGTCGGTCG
GCGCGATAGCATTGACTGAAGTTTCAGAACCTGAgtccatttttttaaaa
tcgAAGACAGGAGCAGTCCCCTCACCAAAAATATGAGGGATGAACAGAAA
CGAGCAAGTGCTTCTCCAGATGTATGTGAGTTAACTTCTGCGACCTTTTG
TGGTGTATCTTAGTTTTAGAAATAAAATCGGATATATCGAGTTGATAATA
TTTACGTATATATGTAGTACATAAATAAATAAATATATAGATAAATATAT
ATGTATGCATACACGCAAAGAAATATGTTTTTTGAAACGATAAGTTCAGT
CGAACGTGCAAAAGTAATATTACGCGGAAAAAGTAAACAAGTCCTTGAGT
CTACT

Coding sequence (CDS) from alignment at CM002456.1:821073..824227+

>rna954 ID=rna954|Name=rna954|organism=Nannochloropsis gaditana|type=CDS|length=2817bp|location=Sequence derived from alignment at CM002456.1:821073..824227+ (Nannochloropsis gaditana)
GTTGAGGCTCCTTCTAATGAGCTTCAAGACGGGTCAGTATTGGATAATTT
CCTCTATCCGTCCCTACATCCCTACAAGTACAATGCATTCAGCTGGCAGC
GACCGACGGACATGCTCGCGACCGAGTTTGGTCTGGGGGATACAGGAAAG
TTTCCCCCAGGAAAGTTTCTTCCAGACAATGGACGTGCGGTAATGTTGAC
GCATGAGCATGTTCGTAACGTGATCTTTACCTGCATCAAGGACACGCTGA
GTGATGTCCCCTCGTTGACGGATGATACCCTTCTTATGGACCTGCAGATG
GACTCCATGGGCGCCGTATCCTTCGTGACAGACGTTTCTTCCCATCTCGA
GGAAACTGGAATAAAATTGCCTCCCGACTTCATGTTTGTGCATCCAAGTA
TTGGTGAAATGATATCTGGCATTCTCAGTCTGGCAAGCACCACGATGCAA
AAAGATACTGGTGCAGACCGGAGAAGTCGTAAGGCGGACCTTTTACCTGT
TCAAACCCGCCGTCATGCTACGTCTGATTATCTAGAGAATTTGCCAACAC
AGCAGGGGTGCCCAAGCTCATGGCTCCTAACTTTTTATTATTTTGTTGCG
ATGGGGTATGTCTCTGCAGTCATACTCTTTCCTGGGTGGCTGGTCCTGAG
CCGCAGCTTTCAATATGGTCTTCATCTCCCTGTCATACTTGGTGTGTTGG
TACTGGCACCTTGCGCAAAGCTCGTCTATGTGACCATTCTGCTTGGTTTG
GTGATATTGAGTAAAAAGCTAATTTTGGGCAACATCAAGCCCAATGAACA
TTTCCCACTTGCAAGCGTCAAATTTGTGCAGTATTGGGCGGTCACAAGGC
TGATGAGTTTTGCGAACATTTTGGTGCTTGGAGAACTGAAGCGGACATAT
TTGTTGAACACATATTACCGTTTAATGGGGTCACGGATCGGCCGAGACGT
TCTTATTGACACCGTCGGGATCACTGACCCCGATATGGTAATCGTACACG
ATGGGACCGTCATTGGCAATGGGGTACTTCTACTTGGACATACGATCCAT
GACGGATTCATCACATTTGGCACGATTGCAATAGGTCAATCATGTACTAT
CGAGCCTCGAGCCATACTCAAACCGGAAGCGCGTGTCGATCATTTTACCA
CAATACCTGCTTTGGCAAGTGTGGGGAGGAATCAGATGCAGTTCCAAGCA
ATTGGGAAAACGCCTCGCAGCGCTTCTTCAGATGCATCCGGCTCACACCC
AGCCAAGAGCTTCTGGCAAGCGATGCTCGACAGTTTAGGGCACGTCGGAG
GACTTTTTTTAACATACGCTCTGGCATCTTCGTCATTGCTAGTTGTCAAC
GCCATTGCTTCAGCCATGTCGGATAGCCAAAGCCAAGGTGGAATTATGTC
GGCGTTGGCAACGCTTCAGCTAACGTCCGGGCTttaccttccctttcttc
ctcttttcgtCGGAGTAGACCGCGACGGATTTGCTGAGGTCCTTATGATG
GCGCTGACTAAGTATGACGTGATTGGGATTATTTGGATATTTCCAGCGTT
TTATCTGGGTTATTCTTGTGTATTGATTGCAGTTACTGCGCTTGTGAAAT
GGCTGCTTATAGGCAAGACGAAGCCCGGTACATCTATTGACAAGGGACGG
ACTGCTTGGTGCAAATGGTTTTGTGACACATTGTTGGAGTACTCTTTCCG
TCACACAGCGTCATTAACCTTGGGCACGTCATTTATCAATTTCTGGCTGT
CTATACTAGGCGCCAAGATTGGGTGGCGCGCATGCATTCGCGTTTGTAAT
GGGATCCATGACATGCCTGATTCATATCGAGACCCAGAGCTTATCGATGT
GGGTAAGGATGTGCACGTTGGCGACCGAGCAGCCCTCATCACAGGAGTCA
CTTGTCGTGCCACGGACGGAGAGAAACGAGGCAACGTGGAGACGACATAT
GGAGTGATCAAAATAGGGGACCGCGCGCTCATTGGAATGGGCTCTGTGAT
ACTTGAAGGGGCACGAATTCCTGCAGGGACGGGGGTGGGTGCGTTGTGCT
GCGTAACATCAAAGGTCTCGCTAAAAGAAGGCGCTATGCACATGGGCAAT
CCACGACCCCGCCCAATCTACCATATTTCCGCGGAGGGCTTACAAGACCG
AAAATTTTCAGCGATGGAGTGGGTTTGGTACTTCACGTTTCCCTTAATAC
AGCCATTGGTAATCACGGCGGTCATTTCTGTGGCCGGATTTTTCACGTGC
CTTTTCAGCATGCTGAGTTTCTGGGAATACACTCCAGCAAGTACGCCATT
AATGGTTGCGCCTTTCATATACATGATCCATGGATTTGTGCTTTGCATGA
TTGTCGTGTTGCTCAAATGGGCACTTTTAGGCCGCATGGTTCCCTCACAA
AGGCATCGTACTTACGGTTTGCACTACTACACCTGGAACATGGTGCTAAT
GGTACAGAGCATCGTACACCTTCATTTTACCGAGTTACTTCGCGGCAGTC
CATTTTACAACGTGTACTTTCGTTGGTTAGGAGTGCACATTGAACGGAAT
GTATTTTTGGAAGCAGTGTCCATCCCCGACGTGGATATGATTTTTctagg
ggagggaagtgtCGTAGAGCAAAATGTACTCTTGGGTGGGCATAGCTACG
AGGcgccctttctttcccggAATCGCGTGCATATTGGAAAAAAATGTGTT
GTCCGGCCAACTGCCGCGACATTACCTGAGTTCAGAATGGAAGATGGTTC
AGAGCTTGATTGTCTTCAAGTGGGTCTGAAGGGCATGGTTGTCGGTCGGC
GCGATAGCATTGACTGA

Synonyms

Publications