rna9524, rna9524 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9524
Unique Name	rna9524
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3574
Alignment location	KK037254.1:70466..73261 +

Link to JBrowse

Properties


Property Name	Value
Product	Major facilitator superfamily domain protein
Orig transcript id	gnl\|cribi\|Naga_100111g4.4975.mrna
Orig protein id	gnl\|cribi\|Naga_100111g4.4975
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:70466..73261 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100111g4	gene9246	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9524	rna9524-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21176.1	cds9493	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:70466..73261+
coding sequence from alignment at KK037254.1:70466..73261+

mRNA sequence

>rna9524 ID=rna9524|Name=rna9524|organism=Nannochloropsis gaditana|type=mRNA|length=3574bp
ATGCAAGCGCAGTACGAGAGATTCATACGAAATACTCGTCTTCAAAATAT
GGCTCTCGTTGTGGATGAGTCGACCAAGCGCATGGCCCGCATGTTAGGCG
CGGAGGAGGCGGAGATCCGGGATGGCATTGCCGAGGAAGGTCTCAGCAGT
TCATTTTATGATGACACTGGACGCCCCTCTCTATTCGTGGGCCTGCAATC
CGACGATGATCGTGAACACCAGACAAAGAAAACGATGAACTACGTGAAGC
AGGCTACAATAAAGATCGCCCTTGAGAAGCAAAGGTCCGTGTCCCGGCAA
AAATCGGGTGGGTACGGATCGATGGAGACTTCCTCCCTCTTGCCCCAGAA
GTTTAAAAGCGGGGAAGTCATGGAGGAGGGAAAGGTGCCCGTGGGCGGAG
AGACGGAGCAGGGGCCCCCGAAGCTCTCATTGCACAAGACGCGGACGGTC
AGCAAGTTGCACTCCGAGGGTCTCACCTCGGAATTCGCGGCAGAGCTCCT
GAAGAAGTTCGGGCGGAACGAATTGCCGGAAAAAAAGAAACCCAAATGGC
TCATTTATATCGAACAGCTGATCGCCCCTATGCCATGCATGATCTGGGCA
GCGATTGCCATCGAAATTGCCATCAAGTCCTGGCCCGACATGGCCATCCT
CCTTGGGATTCAATTCATGAACGCCTCCCTTTCCTACTACGAGACCACCA
AGGCCGGTGACGCCGTCGCCGCCCTCAAGGCCTCTCTCAAGCCTGTCGCC
CACGTCAAACGGGACGGAAAATTTGTGACCATGGACGCGGCGCTTCTGGT
GCCCGGCGACCTGGTTCTCTTGGGCGCCGGCGCGGCCATCCCGGCGGATT
GCATCGTCAACCACGGCACGATCGACGTGGACCAAGCGGCCTTGACCGGG
GAATCCCTGCCCGTCACTTTTTACAAGGGCGATAGCGTCAAGATGGGGTC
GACGGTGGTGCGTGGGGAAGTGGAAGGCACTGTGGAATGCACGGGAGCCA
ACACCTTTTTCGGAAGGACGGCCGCCCTTCTGCAGGGAGGGGACGAATCT
TCCAACTTAGACAAGCTTCTGATGAAGATCATGATCGTCCTTGTCATCCT
CTCCATGAGCCTCTGCGGCATTGCCTTTGGCTATCTCCTGGCCTCCGGGG
AGCACGTCCGTGCGGCCCTGTCGTTCACTGTGGTCCTTCTGGTCGCCTCC
ATCCCCATTGCCATTGAGATTGTCTGCACCACCACCCTCGCCCTCGGTTC
CCGCGAACTCGCTAAGGACGGCGCCATCGTTTCCCGCTTGGCCGCCATTG
AGGACATGGCGGGGATGAGCATCCTGTGCTCGGACAAGACGGGGACCTTG
ACGCTGAACAAGATGGTCATCCAGCAGGAGACCCCCACTTACGCCAAGGG
CGAGACGCAGTACACGATCCTGCGGTACGCGGCCATGGCCAGCAAATGGA
ACGAGCCTCCCCGGGATGCGTTGGACACTCTGGTCCACAGCTGCGCGGAT
TTAGCCTCCCTGCGGGACGTGAAGCAGACGGATTATTTACCGTTCGACCC
CACCATCAAGCGCACGGAAGCCACCGTGGTCCTGCCCCGGGGGGAGACCT
TCAAAGTGACCAAAGGCGCCCCCCACATCATCATGCAGCTTTTGAGCGGC
CCTGAGAACGCCAAGGTGCTCGCCCAGTGCGAGAAAGACGTGGAAGGCTT
GGGTGCACGCGGCATTCGCTCGCTCGCCGTGGGCAAGACGAACGCGCAGG
GTGCATGGGAAATGATGGGCTTGTTGACCTTCTTGGACCCGCCTCGCCCG
GATACGAAAGCCACGATCGACCAGGCCCGGGACTTTGGAGTGGAGGTGAA
AATGATCACGGGCGACCACCTCTTGATCGCGAAGGAGACGGCCCGGCAAT
TGGGCATGGGCGACAATATCCGGGACGCAGAGATGCTCCCGAAGCTAGAC
CCGGAGACGAAGAAACCCCCGCCGGACTTGATGGATCATTTCCAATACGT
TGAGGAGACCTCTGGCTTTGCCCAGGTTTTCCCCGAGCACAAATTCTTGA
TCGTTGAAGTCCTGCGCAAGGGCGGATACAAGACGGGGATGACCGGAGAC
GGCGTCAACGATGCCCCTGCCTTGAAGCGGGCCGACGTCGGCGTGGCTGT
CCAGGGCGCTACGGATGCCGCCCGTGCTGCTGCCGACATTGTCTTGACCA
AGCCGGGCCTCTCCACCATCGTCACCGCCATCGTGGTAGCGCGCATTGTC
TTCGGGCGCATGACCTCGTTCATCACCTACCGTATCGCCGCCACCCTCCA
GCTCTTAGTCTTCTTCTTCGTGGCCGTCCTGACGCTGCACCCGATCGAAT
TCCAACCCGAAGGTGACGACGACAACTGGCCCGCGTTTTTCCACATGCCC
GTGCTGATGCTGATGCTCATCACCCTCTTGAATGACGGGACCCTCATCTC
CATCGGATACGACACCGTGTCGCCCTCCACCACCCCCGACAAGTGGAACC
TGCGTGTACTCTTCACCGTCTCTGCCGCCCTTGGGGGCGTGGCCTGTCTC
TCCTCCCTCCTCCTTCTTTGGGTCGCGCTGGACTCTTGGAATCCCCACGG
GCTCTGGGGAAGCTTCGGCTTGGCGGGCCTCTCCTACGCCCAGGTCACCT
CCATGATCTACTTGAAGGTATCCATTTCCGATTTCCTTACCCTCTTCTCC
GCGCGCTCCGGAGACGATTTCTTTTGGACGAATCCCCCCAGCAAAATTCT
GCTTGTTGCGGCGACCATTGCCTGTTCCTTGTCCACCCTCATGGCGAACA
TCTGGCCGGCCTCCTACCCGGACGGGATCCCCACCATCGGCCTGGCGAGA
CTCCCGCCGCATTTGCTCTCATTGTACGTGTGGTTGTATTGTCTGGCATG
CTGGGTGGTGCAAGACGCGGCCAAGGTAGGGACCTACAAGATGCTGCGGA
CGTACAACGTGTTCGGGGTAAATGATGTTGTCAGCCTTCGGAAGGCGGAC
GTGTCTATTATGGTATAAAGCACAGGACACCCAAATTATGTGCGTGAGAT
TATTCACGTTGTGATCGTTGTAAGAGCATGGGATACGGGACGGATGTAAA
GGCTGACCATGCCCTTCTGTGAGGTGATAGTGTAGACCAACGTTAGAAAG
AGATGTTGGGATGCGCATAAAGGGGCGAGAGGCACAAACGAGAAGGAGGG
CATATAATAGGGATAGAGATAGAGGGACTATCGCTGAGAAGGTGAAAGAT
TTTCGATGTGAGGAAATTGTCTCCCCATTGTCGACCGTAAGGTTTCTTAT
ATCCCGGGGCATGCGCCAGACCTCGAAGGGATGTGTGTAAGGTCAGGTAT
GACAGTAAATATTTGTGAACAGAGAGTAAATGCGCGCATATTGATTTACG
TGATTACACAAATGAGCGAGAGGGCAAGTAGCTAAACAGCATCGAAGCAT
GCACTTCTAGCCATAGTATTTCTTACTTGAGATAAGACCCCAAAAAGAAG
TTTGATGTGATGGCAAGATATTGTGTCGATTCTCGCGGCAAAATTGTTGA
TGGCTTTTGCACCGCCTTTGACGC

protein sequence of rna9524

>rna9524-protein ID=rna9524-protein|Name=rna9524|organism=Nannochloropsis gaditana|type=polypeptide|length=644bp
MRRIACRRNRNLHIRSASVVLGAFLLLGAVVGSTRSIGAHGESNSCLSRS
QSRDLSSGRRGRRPGNRRGGEADRIPSPREAFDSRKSPLARIQQASEVQG
RKTRIPHSAPALVQARPRSMRSPGSKADGALPVDRPARRPSLTGGRPSSR
PSSHLQDKTAESLAALDDTVSQLCRRVRGGSVSERSVPAVPKGASPSTAP
AALQTGDGPPSMASTLVTVKLLFLLFYGSLGAVMPYLPVYYHSLGLPDKQ
IGMLGAITPAVTFVVAPLWGALADQTGRHKDVLLFTFVASVVSRLLFIWR
TTFGWLAILVFCTAVLNAPVRPLLDSSVLNLLEDKREYGKQRLWGQFGFG
LAGCIVGPCLMNHKFGGYKAAFYVHALISLPTLLIMRRFNPTPPAPAPSS
PPLPVASTNKSEKSSTAKEEGPGAVALPSRAPSAALSSQRAKPRFREGLG
IVVRNPDALIFFFLVFVIGVSSGVIENFAYKRLREVGGEGTVMGVSRFFS
SVTGVPMFWFSGHVTRRLSVMGVLILSLCSYILRFFIYASITNPWQGLPA
EALRGFTFAAMWASSTYYTHKISPPGLSATMLGFLNGMYGGLGQSTGALI
GGGLSHRVGTPRTFVLAGLADIVVVICFGTYWWLHPNATRLKEE

mRNA from alignment at KK037254.1:70466..73261+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9524 ID=rna9524|Name=rna9524|organism=Nannochloropsis gaditana|type=mRNA|length=2796bp|location=Sequence derived from alignment at KK037254.1:70466..73261+ (Nannochloropsis gaditana)
TTGATGACGAATGTCGACGAATGTGGGGTGTGTGGAGATGGCGGAGCGTG
TGTATTTTTGTTGGACCCTCGACTCATTGTATGAAAGTGCCTGGAGCTGT
TCAACTCGCGCGGTGAGACAGAGGCCACCCTCAGTTCAATCAATGCACCG
CAAGTGAATTACCCGAGATGCGCTTCTAAACACATGAAAATCACCTGATT
CTTCTCCTCAACTCTCTAATTTATTACTGTACTTGCTAAAATCAGGTAGG
GTCGTCATTTCCAATCACGTTTGTCAGGACACATTGCACGTCAAGTCTGC
AGCTCAGGCGcctcttcattttttttttccgttTCCAGCCTTGTCGGGTC
TCTGGCACATTTCGAGCTTCCCACCAGTCAGTTAAGATTTGCCCACCATT
TAGCTAGGTATGAGGAGGATTGCCTGTCGCAGAAACAGGAATCTCCACAT
TCGATCTGCGTCTGTCGTTCTTggcgccttcctcttgctcggAGCTGTGG
TTGGTTCTACCCGAAGCATCGGGGCTCACGGGGAGAGCAACAGCTGCTTA
TCGAGAAGCCAAAGCCGCGACTTAAGtagtggaagaagagggcgtCGCCC
TGGAAATAGACGCGGCGGAGAAGCTGACAGGATTCCAAGCCCCAGAGAGG
CATTCGACTCCCGGAAAAGCCCCCTTGCCCGGATACAGCAGGCATCGGAG
gtgcaaggaagaaaaacgaGAATACCTCATTCAGCTCCTGCTCTTGTGCA
AGCGAGACCAAGAAGCATGCGCAGCCCCGGCTCGAAAGCGGACGGCGCCC
TCCCTGTCGACCGTCCCGCGCGGCGACCGTCCTTGACAGGGGGCAGACCT
TCTTCGAGGCCCTCCAGCCACTTGCAAGATAAAACCGCGGAGTCCCTTGC
TGCACTCGACGACACCGTGAGCCAGCTCTGTCGTCGAGTGCGTGGCGGGA
GCGTCAGCGAACGTTCCGTCCCCGCCGTGCCCAAAGGGGCCTCTCCCAGC
ACGGCCCCGGCGGCATTGCAGACTGGGGATGGGCCGCCATCAATGGCCTC
CACCCTGGTGACCGTGAAGCTGctattcctcctcttctatgGATCCTTAG
GAGCAGTCATGCCTTACCTCCCCGTCTACTACCACTCCCTGGGCCTCCCC
GACAAGCAAATTGGCATGTTGGGAGCCATCACGCCGGCCGTCACTTTCGT
TGTCGCCCCTCTCTGGGGAGCCCTGGCCGACCAAACGGGCCGACACAAGG
ACGTGCTCCTCTTCACTTTCGTCGCCTCTGTGGTCTCCCGCCTGCTTTTC
ATCTGGCGGACCACCTTCGGATGGCTGGCAATTTTGGTGTTCTGCACCGC
GGTCTTGAATGCCCCCGTTCGGCCCTTGCTGGACAGCAGCGTCTTGAACC
TGCTGGAGGACAAGCGGGAGTATGGGAAACAACGCCTATGGGGCCAGTTT
GGCTTCGGGTTGGCGGGCTGCATCGTGGGTCCTTGCTTGATGAACCACAA
GTTTGGGGGGTACAAGGCCGCTTTCTATGTCCAtgccctcatctccctcc
ccacgctccTGATCATGCGTCGCTTTAACCCGacccctccagcccccgcg
ccctcttcccctcccttacctGTGGCCTCCACGAACAAGTCGGAAAAGTC
CTCAACggccaaggaagaggggccgggggctgtcgccctcccttccaggg
CACCCTCtgcggccctctcctcccagcGGGCCAAACCGCGCTTTCGAGAA
GGGCTGGGTATCGTTGTTCGAAACCCAGACGCCctcatctttttcttcct
tgtctttgtGATCGGAGTCTCGAGCGGCGTCATAGAGAACTTTGCCTACA
AACGCTTACGGGAAgttggaggggaaggaaccGTGATGGGAGTTTCgcgc
tttttttcctccgtcACGGGCGTCCCCATGTTTTGGTTTTCCGGGCATGT
GACCCGGCGACTGAGCGTGATGGGGGTCCTGATCCTCTCTTTGTGCTCCT
ACATTCTCCGCTTTTTCATCTACGCGTCTATCACCAATCCCTGGCAAGGT
CTGCCTGCCGAGGCACTCCGAGGGTTCACTTTTGCGGCCATgtgggcctc
ctccacctacTACACGCATAAAATTAGCCCTCCTGGATTAAGTGCGACGA
TGCTGGGATTCTTGAACGGTATGTATGGCGGGTTAGGACAATCCACAGGG
GCGCTCATTGGCGGAGGCCTGTCGCACCGTGTCGGGACCCCCCGGACGTT
TGTTTTAGCGGGCTTGGCCGACATCGTGGTGGTCATTTGCTTTGGAACCT
ATTGGTGGCTGCATCCGAACGCGACCCGGTTGAAGGAAGAGTGAGGAAGA
CAGCTCAGGCTCTCTCAATTTTAACTGTGTGACGCTCGGGTTAATTTGCG
GAGGCCCTGATAACACGTAGGTTTTGCGGCGCGTATAACGCAGCCATGAG
TTATGCCCTTGTCCACAATCCCCCATGAGCATCGTGGGGTCTTGGATAAT
CATGAAGATTCGAGGCATCACCTCTTGATTTCACACAATGATGCTTGCCA
CGGGAAAAGAGAGTTGCGGTGGTAGGGCTGCTAAGGAGAAAAACAGCGta
tggcggaggaaggagatatTGGGAGAACCAAAAACAGGCGTATGTAACAT
AGCGGAACGTGACcagagcaggaggatgggaaacAAGGAGTTGAAAGCAA
ATGATAGCTTCCTCCCGCTGGGACGATGAGATCTACCGGAGTGTCTGAAC
ACcggcaaagaaagaaatttAATCAAACGAAGACCCATGATTTATA

Coding sequence (CDS) from alignment at KK037254.1:70466..73261+

>rna9524 ID=rna9524|Name=rna9524|organism=Nannochloropsis gaditana|type=CDS|length=1935bp|location=Sequence derived from alignment at KK037254.1:70466..73261+ (Nannochloropsis gaditana)
ATGAGGAGGATTGCCTGTCGCAGAAACAGGAATCTCCACATTCGATCTGC
GTCTGTCGTTCTTggcgccttcctcttgctcggAGCTGTGGTTGGTTCTA
CCCGAAGCATCGGGGCTCACGGGGAGAGCAACAGCTGCTTATCGAGAAGC
CAAAGCCGCGACTTAAGtagtggaagaagagggcgtCGCCCTGGAAATAG
ACGCGGCGGAGAAGCTGACAGGATTCCAAGCCCCAGAGAGGCATTCGACT
CCCGGAAAAGCCCCCTTGCCCGGATACAGCAGGCATCGGAGgtgcaagga
agaaaaacgaGAATACCTCATTCAGCTCCTGCTCTTGTGCAAGCGAGACC
AAGAAGCATGCGCAGCCCCGGCTCGAAAGCGGACGGCGCCCTCCCTGTCG
ACCGTCCCGCGCGGCGACCGTCCTTGACAGGGGGCAGACCTTCTTCGAGG
CCCTCCAGCCACTTGCAAGATAAAACCGCGGAGTCCCTTGCTGCACTCGA
CGACACCGTGAGCCAGCTCTGTCGTCGAGTGCGTGGCGGGAGCGTCAGCG
AACGTTCCGTCCCCGCCGTGCCCAAAGGGGCCTCTCCCAGCACGGCCCCG
GCGGCATTGCAGACTGGGGATGGGCCGCCATCAATGGCCTCCACCCTGGT
GACCGTGAAGCTGctattcctcctcttctatgGATCCTTAGGAGCAGTCA
TGCCTTACCTCCCCGTCTACTACCACTCCCTGGGCCTCCCCGACAAGCAA
ATTGGCATGTTGGGAGCCATCACGCCGGCCGTCACTTTCGTTGTCGCCCC
TCTCTGGGGAGCCCTGGCCGACCAAACGGGCCGACACAAGGACGTGCTCC
TCTTCACTTTCGTCGCCTCTGTGGTCTCCCGCCTGCTTTTCATCTGGCGG
ACCACCTTCGGATGGCTGGCAATTTTGGTGTTCTGCACCGCGGTCTTGAA
TGCCCCCGTTCGGCCCTTGCTGGACAGCAGCGTCTTGAACCTGCTGGAGG
ACAAGCGGGAGTATGGGAAACAACGCCTATGGGGCCAGTTTGGCTTCGGG
TTGGCGGGCTGCATCGTGGGTCCTTGCTTGATGAACCACAAGTTTGGGGG
GTACAAGGCCGCTTTCTATGTCCAtgccctcatctccctccccacgctcc
TGATCATGCGTCGCTTTAACCCGacccctccagcccccgcgccctcttcc
cctcccttacctGTGGCCTCCACGAACAAGTCGGAAAAGTCCTCAACggc
caaggaagaggggccgggggctgtcgccctcccttccagggCACCCTCtg
cggccctctcctcccagcGGGCCAAACCGCGCTTTCGAGAAGGGCTGGGT
ATCGTTGTTCGAAACCCAGACGCCctcatctttttcttccttgtctttgt
GATCGGAGTCTCGAGCGGCGTCATAGAGAACTTTGCCTACAAACGCTTAC
GGGAAgttggaggggaaggaaccGTGATGGGAGTTTCgcgctttttttcc
tccgtcACGGGCGTCCCCATGTTTTGGTTTTCCGGGCATGTGACCCGGCG
ACTGAGCGTGATGGGGGTCCTGATCCTCTCTTTGTGCTCCTACATTCTCC
GCTTTTTCATCTACGCGTCTATCACCAATCCCTGGCAAGGTCTGCCTGCC
GAGGCACTCCGAGGGTTCACTTTTGCGGCCATgtgggcctcctccaccta
cTACACGCATAAAATTAGCCCTCCTGGATTAAGTGCGACGATGCTGGGAT
TCTTGAACGGTATGTATGGCGGGTTAGGACAATCCACAGGGGCGCTCATT
GGCGGAGGCCTGTCGCACCGTGTCGGGACCCCCCGGACGTTTGTTTTAGC
GGGCTTGGCCGACATCGTGGTGGTCATTTGCTTTGGAACCTATTGGTGGC
TGCATCCGAACGCGACCCGGTTGAAGGAAGAGTGA

Synonyms

Publications