rna9519, rna9519 (mRNA) Nannochloropsis gaditana

Overview
Namerna9519
Unique Namerna9519
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1182
Alignment locationKK037254.1:51634..52013 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103460g1.7430.mrna
Orig protein idgnl|cribi|Naga_103460g1.7430
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:51634..52013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103460g1gene9240Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9519rna9519-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21185.1cds9488Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9519 ID=rna9519|Name=rna9519|organism=Nannochloropsis gaditana|type=mRNA|length=1182bp
CACTCAAATTTACGTGTGCACGCTCACCACATATGAAAGTCTCTTGCACA
CGAACAGATCTCTGACGTTTACTGTCAGGACATTTTTGCAATACAGGTCG
AAGATCGACTCATTCTCAATCCGAGCCGCTAGCAAGGAGGAGGCCAATTG
TTGCTTCTCGAAAGGTATAGGCACTACTACCAGCAGCTAAACCGGTCGAC
GACAGGAAGACGAGGGGCGTGATAAATGCGCTACATTCATACAGGATTGG
CCTTCGAAGCGTCCTCGGTTTTTAAAGGTCTGGGTGAGGAGGGTTGAGGG
CATCCGTGATAGTTTTACGAAGGACAGTAAGCGGCCACAGGCTCAGCAAG
AAGTGAAAATAGCGGAACATTGCCTTGACAGGTCTTTTTGTGCTGGAAAC
GACCCTGTATCATCTGGGTTGATCTCGCGCGAGCAACGGGAAGGTAGGAC
GGCCACCCCTCAAGCATCCTCGTCACGTGCGCCGGGCGGAAGCAAGCCTG
GATATTCCACCGACACGCCCGTCAGCAAGTGAAATATCTGCATACAACTC
TGTGATGGTGGCAGGGCCGCAACAGACCTATTCAGCAGTTTACAATCGCC
TTTTTGTCTCCGCGCCTCTCCGGCGCCTCCCTCATCTCCCTCCCTCCCTC
CTCCTCCTCCTCCCCATGCTGCTCTCCTCCACCTTCACGCATGCCTCCTC
CTGGACCACACGTCGCACCGGCCTGGCTTCCTCTCTGTCTTTCTCCCCCA
CCCGGGCGCGCGTCCTCTCTGGCCCGGGGCAGGGGGGACCATGCCCCCTT
CCCTGGTCAGTGCGAAGCCTTTCCGCCCGCCGCCCCTCCTCCTTCCTCCT
TCCCTTCAGCCAAGGAGAAGGCGCACACGAAGACGTGGGAGTGGGGAGGA
ACGGACGGGGGGAGGCGCGAAGGACTCTTTGTCCGTCTTGGGCTATCCGG
GCTCGCAGCCGGGTGCATGCGTCGAGGGATATCGATGGCCACGGAGGCGG
GAAGGAGGAAAGGAGAGTTGGAGGGAAGGAGGGCGGAAAAGTGGGAATGG
AGCCGGGTGCCAACGGGCAGCACCAACAGGCGGAGTTCTTGAACGATTTT
CTGGTGGGGATGGGGGCGAGGGAGGGAGGGAGGGAGGGAGGATGGGAAGG
AGGGAGGAGGGGAGGAAGGGAAGGAGGGAGGT
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protein sequence of rna9519

>rna9519-protein ID=rna9519-protein|Name=rna9519|organism=Nannochloropsis gaditana|type=polypeptide|length=106bp
MICREKAISGYGHPSPFLPPFLLSFLPPFLLPSLPPRFQLKDAKALLEHR
EIVLYPQSVTDGCMVDGKAVLRESRPSDHDYQAAILRWGGGREGRRGGKE
RPYPSA
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mRNA from alignment at KK037254.1:51634..52013+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9519 ID=rna9519|Name=rna9519|organism=Nannochloropsis gaditana|type=mRNA|length=380bp|location=Sequence derived from alignment at KK037254.1:51634..52013+ (Nannochloropsis gaditana)
ATGATTTGTCGTGAAAAGGCAATCTCAGGATACGGCCacccatccccctt
cctccctcccttcctcctttccttcctccctcccttcctccttccctcgc
tcccgccgcgGTTCCAGCTGAAGGACGCCAAGGCCCTCTTGGAGCACCGG
GAGATCGTGCTGTACCCACAGAGCGTGACGGACGGGTGCATGGTAGACGG
GAAGGCGGTGCTGCGTGAGTCGCGCCCCTCGGATCATGACTACCAGGCCG
CCATACTccggtggggaggagggagggagggaaggagagggggaaaggag
aggcccTATCCCAGCGCTTGATGTGGTGATGCTGACTCCCGCGTGACTCT
AATGGCCGTAGACTCACGACACTGAccgtt
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Coding sequence (CDS) from alignment at KK037254.1:51634..52013+

>rna9519 ID=rna9519|Name=rna9519|organism=Nannochloropsis gaditana|type=CDS|length=321bp|location=Sequence derived from alignment at KK037254.1:51634..52013+ (Nannochloropsis gaditana)
ATGATTTGTCGTGAAAAGGCAATCTCAGGATACGGCCacccatccccctt
cctccctcccttcctcctttccttcctccctcccttcctccttccctcgc
tcccgccgcgGTTCCAGCTGAAGGACGCCAAGGCCCTCTTGGAGCACCGG
GAGATCGTGCTGTACCCACAGAGCGTGACGGACGGGTGCATGGTAGACGG
GAAGGCGGTGCTGCGTGAGTCGCGCCCCTCGGATCATGACTACCAGGCCG
CCATACTccggtggggaggagggagggagggaaggagagggggaaaggag
aggcccTATCCCAGCGCTTGA
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Synonyms
Publications