rna9507, rna9507 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9507
Unique Name	rna9507
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1144
Alignment location	KK037254.1:20597..21630 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101635g2.3096.mrna
Orig protein id	gnl\|cribi\|Naga_101635g2.3096
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:20597..21630 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101635g2	gene9228	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21197.1	cds9476	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9507	rna9507-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:20597..21630-
coding sequence from alignment at KK037254.1:20597..21630-

mRNA sequence

>rna9507 ID=rna9507|Name=rna9507|organism=Nannochloropsis gaditana|type=mRNA|length=1144bp
CCCCCCCGGAGGGAGGCCGCGCAAGCCCTCTTTGACCGGGCCGTGGGCCA
AGGTCTCTGCCCTTCTTTGGAGATGTACGGGGCACTTGTGGATGTGTACG
CGAAGGAGGGGGACGTCCCGGGGGCCTGTCGAGTCTTCCGGGAGGCCTTG
GGGCATCTCCAGCGGGAGGGCAGGAAGGAGGGCGGGAGGGAGGGCGGGAG
GGAAGGAGGGAAAGATAACCCGTTTTCCTACCTGTACACAAGTTTGATTC
ACGCCTTCAACACGGCTCCAACGCCGCTTTCTCCCCCGCCCTCCCCCGGT
TCCTCTCCCCCGTCCTCCCCTCTCCCTTCCTCCTCGGAGGGAGAAGCCCC
TCTCCCTTCCTCCTCAGAGGGAGAAGCCCCGTGGCCCGCGGCGCTTTACC
TCTTTGAAGAGTACCAGCTTGGCGTGCGTGGGAACAGGACCACCATACCC
CTCCTCACCGCGGTCGCCCGCTCCTTGGATGCAGCCCTCCCTCCCTCCCG
CCCTCGCGCCCCGCCTCCTTTTCCCCTGCCCACGGCCATCCTCCACGTCC
TTTACCGACGCCACGCCCCCCTCACGCCTCTCCGCTCCCATTGGTCGTAC
CGGTACCCATCCTCCCTTGACCTTCACCTCCTCACCCGACCCTTGGCCCA
GGCCGCGGTCCACACGGCTTTGGAGGAGATACGGCAAGGTGAAGTCACCT
TAGCACCGGAAGGGCTGCAGATCATCGTGGGGAAAAGCAGTCAGGTCGTG
CGGGGGGGAGTGAAGGAGGCCTTGGGCGAAGAGTGCCGCCCGCCTCTGGA
AGTGGAAGAGGTGGGGGGAAACGATGGGAGGTTGCTGGTGTCATTGGCGA
GTGTGAATGCTTGGTTGGCGCGACAAGGGGAGGGGGAGGGAGGAGGGGAC
GGGAAGGCGGGGGGGAGGAAGGAGGCGAAAGTGAACCCGGCGTACACCTT
GGAGACGCCGAGGGGATGAGGGAGGGGGAGGGAAGGGGGGAGGGGAAGGA
AGGGGAGGGAAGAGGTGGCGTGTTGCCCTGGTGTAGAAGGTCGCCAGATA
GGAAGGGAGGAGGTTTGCAAGGAGATGGCGCAAAGTACTTCGAGAAAACA
GAAAGATAGGGAATGGAGGCAATGAAACGATGCAGACATTGAGA

protein sequence of rna9507

>rna9507-protein ID=rna9507-protein|Name=rna9507|organism=Nannochloropsis gaditana|type=polypeptide|length=172bp
MTLGAVVARRGSVGWRLTRRTILPLTSPPFQHGGRQVVRRPLTLLNPETP
QELASIPPQHQEEGIGKATSPRQRKRRSRNLARGFSPLAPPKGEMQSPLG
ESHARRHELHRPQRPQKQGKAGQEGEKAPGQAVRPWHPPGVLTSSEGEEG
MAGLLLVDTVLDKYVPLFDIPR

mRNA from alignment at KK037254.1:20597..21630-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9507 ID=rna9507|Name=rna9507|organism=Nannochloropsis gaditana|type=mRNA|length=1034bp|location=Sequence derived from alignment at KK037254.1:20597..21630- (Nannochloropsis gaditana)
CACAGGACGAGCGAAAATAGTTTCCTGGTAACATGACATTGGGTGCCGTG
GTCGCACGGCGTGGATCGGTGGGGTGGCGATTGACACGTCGCACCATCCT
CCCCCTCACCTCCCCTCCATTTCAGCACGGGGGGAGACAAGTAGTGAGGC
GGCCGCTCACACTTTTAAATCCAGAAACACCACAAGAATTAGCGTCAATA
CCACCGCAGCACCAGGAAGAAGGCATCGGGAAGGCTACATCCCCGCGACA
GAGGAAACGCAGGTCGAGAAATCTCGCGAGGGGCTTCTCGCCGCTTGCTC
CCCCGAAGGGAGAGATGCAATCTCCCCTCGGTGAGTCCCACGCCCGTCGG
CACGAGTTACACCGCCCACAGCGGCCACAAAAGCAAGGAAAGGCAGGGCA
GGAAGGAGAGAAGGCGCCCGGACAAGCTGTTCGACCCTGGCATCCGCCAG
GTGTACTGACGAGCTCGGAGGGGGAGGAGGGAATGGCTGGCTTGCTCCTG
GTCGACACGGTGTTGGACAAATATGTGCCCCTTTTTGACATCCCAAGGTA
GGTTTGGACCAGGAATTTTCGTCTTTTGCGGACCTTTCTTTTCGAATAAC
TTCCTTCCCGTCCTCCCCTCCTTAGTCTCCTCCGTCTCGTCCAGCAAGCC
TCCCTCCCCTTGAATCTGGACATTTTCAAGCGGACGATCGCCGCCTGCGT
CCGAAACAAAGATGCGGTCAAGGCGCTGGGGCTTGTGGTGGAGATGCGGG
AGCGGGGCATCGTTCCTGATTTGGAGGTGTACGAGACGATAACGGGGGGA
TTCACCCAACAGGGGGAGCCGGACGTGGTGCTGGCCGTGCTGCGAGGGCT
GGAGGGAGGGAGGGAGGGGGGTAGGAAGGGAGGGAGGGAGAAAGGAAGGG
AGGGAGGTGGTGTGGTCCCCTCCGTGCAGATGTACAATCACTTGATTCAA
GCTTACGTGACGGCGGGGAGGAGGGAGGAGGCGGAGCGAGTGTTCCAGGC
AATGAAGGCAGGAGGGCGGGAAGGAGGGCGGGAA

Coding sequence (CDS) from alignment at KK037254.1:20597..21630-

>rna9507 ID=rna9507|Name=rna9507|organism=Nannochloropsis gaditana|type=CDS|length=519bp|location=Sequence derived from alignment at KK037254.1:20597..21630- (Nannochloropsis gaditana)
ATGACATTGGGTGCCGTGGTCGCACGGCGTGGATCGGTGGGGTGGCGATT
GACACGTCGCACCATCCTCCCCCTCACCTCCCCTCCATTTCAGCACGGGG
GGAGACAAGTAGTGAGGCGGCCGCTCACACTTTTAAATCCAGAAACACCA
CAAGAATTAGCGTCAATACCACCGCAGCACCAGGAAGAAGGCATCGGGAA
GGCTACATCCCCGCGACAGAGGAAACGCAGGTCGAGAAATCTCGCGAGGG
GCTTCTCGCCGCTTGCTCCCCCGAAGGGAGAGATGCAATCTCCCCTCGGT
GAGTCCCACGCCCGTCGGCACGAGTTACACCGCCCACAGCGGCCACAAAA
GCAAGGAAAGGCAGGGCAGGAAGGAGAGAAGGCGCCCGGACAAGCTGTTC
GACCCTGGCATCCGCCAGGTGTACTGACGAGCTCGGAGGGGGAGGAGGGA
ATGGCTGGCTTGCTCCTGGTCGACACGGTGTTGGACAAATATGTGCCCCT
TTTTGACATCCCAAGGTAG

Synonyms

Publications