rna9503, rna9503 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9503
Unique Name	rna9503
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	201
Alignment location	KK037254.1:12186..13858 -

Link to JBrowse

Properties


Property Name	Value
Product	salicylate 1-monooxygenase
Orig transcript id	gnl\|cribi\|Naga_101430g1.5028.mrna
Orig protein id	gnl\|cribi\|Naga_101430g1.5028
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:12186..13858 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101430g1	gene9224	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9503	rna9503-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21201.1	cds9472	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:12186..13858-
coding sequence from alignment at KK037254.1:12186..13858-

mRNA sequence

>rna9503 ID=rna9503|Name=rna9503|organism=Nannochloropsis gaditana|type=mRNA|length=201bp
ATGTGGACGCTGATGAAGATCTGCTCAGGAAGGGGAGGGAGTGAAGAAGG
GAGAGAAGGAGGGAGGGGGGAGGGAGGGGGGGAGGACAAGGAAGGCCGGA
AACTGGGCGGATATCGTTTAGTAAAGTTTGCCTTAATTCCCTTCGCGGAT
GCATTCGAGAAGGCAGGTGGTCCGAAGGCTTGTGCCATGGGCGACGATTG
A

protein sequence of rna9503

>rna9503-protein ID=rna9503-protein|Name=rna9503|organism=Nannochloropsis gaditana|type=polypeptide|length=249bp
MPQERRHLLFAACFTFLILLAGLGHTTMASSASLSGASRTDIFPRQGGSA
TRAAPLPNDDTEVLDVAIVGGGIGGLATALALQKLAPELSFCLYERSPTL
RGGEGTALTLWPNGLSALGAIDAALLAQVKSAGSVIRKQTFNTPARNVTE
DTGTFSSLYGEPLLSVFWKHLHGQLARAVREGGKEGGKEGGGDDRGSILM
GKACVDVVPFPEGGREGGRVQLLFADGSTVRAQCVLAADGVHSGRGEAE

mRNA from alignment at KK037254.1:12186..13858-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9503 ID=rna9503|Name=rna9503|organism=Nannochloropsis gaditana|type=mRNA|length=1673bp|location=Sequence derived from alignment at KK037254.1:12186..13858- (Nannochloropsis gaditana)
CAGGACACGGAAACCGATGCCACAGGAAAGGCGGCATCTCCTTTTTGCTG
CTTGCTTCACCTTTCTCATCCTTCTTGCTGGCCTTGGGTAAGTCAACAAA
AAAAACAATTGACCGACCTACCCACGTCTTGACCCTCTTATGCATGTACC
GGGCCCACGGCGAATACAGGCATACTACCATGGCGTCTTCCGCGTCTCTC
TCTGGCGCTTCTAGGACTGACATCTTTCCCCGCCAGGGGGGTAGTGCCAC
GAGGTGCGTCATCTCTCTTCCTTTTCCCTCACTCTACCCTTAACCCTCCT
GTCCTTTGCGTTCCCGACGCCCCAAGTCCAGTCACCACGCTCCTAAGGCT
ATTCTGAAAGATGAAGCGCAGCAGACGCACAGCTTTCTATTGGCTACCTC
GTTGTCTAACCTTCTCCTTCCAGCCTACTCAACCTCCCCCGTCTTTCCCT
CCAGGGCCGCGCCGCTTCCTAATGACGACACCGAAGTACTGGACGTGGCT
ATCGTCGGCGGCGGTATTGGTGGCCTGGCAACTGCCCTGGCGCTTCAGAA
ATTGGCACCCGAACTCAGCTTTTGCCTGTATGAACGCTCGCCAACCCTCC
GGGGGGGGGAAGGAACCGCCTTGACGCTCTGGCCGAATGGACTCTCGGCG
TTGGGGGCGATCGACGCGGCTTTGCTCGCGCAGGTGAGGCTCGTGGAAGT
CCGGGAGATGCCTAGATGGAAGAAGAGAGGGTGGCCCATGGTGCGGGCGG
CCTGAGTGTCCTCCCCTCCCTCCTTCCCTCCCTCCGGCCCTTCTTCCCTC
CTTTCTCTTCCTCTCGACTGACCCTTTCTTTTCTTCCTCCTCCCCCTCCT
CTTCCCTTCTTTCCGCCCAGGTGAAGTCCGCGGGGAGTGTCATCCGAAAG
CAGACCTTTAATACGCCCGCACGGAACGTCACCGAGGACACAGGTACCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCTTTCCCTCTCTCCGTC
GCCCGCTTCTTTCCTCTTTCGTCCTCTCCGTTCCTCCATCCCTTCTTCCC
TCCTCTCCTCTCCCTCTGTATTGCCCCCTCCTTCCCTCCCTTCCTCCCTC
CCTCCCTCCCTCCCTTCCTCTCCCTCCCTCTGTATTGCCCCCCCCCTTTC
CCTCCCTTCCTCCCCTCCTTGTGTAATCATCTTCATCTCTTACCTTCCCC
TTTTCCTGCCTGCCTCTCTTTTTTCGATTGGTTCGCTCTTCCTCTTCCTT
TCTCATCGCTGTTTCCCTCCTTGTCCTCACGTTTCCCGTCATCCCTCCCT
TTCCCTCCAACCCTCTCTTCCCTCTCTCCCCTCCTTCCTCCACACCTTCC
CTCCCCATCGCCCCCATCGCCCCCCCCTTAAGGCACCTTCTCCTCCCTGT
ACGGAGAACCCCTCCTCTCCGTCTTCTGGAAACACTTGCACGGTCAGCTG
GCCCGTGCGGTGCGGGAGGGCGGGAAAGAGGGCGGGAAAGAGGGCGGGGG
GGACGACCGGGGCAGCATCCTCATGGGAAAGGCCTGCGTGGATGTGGTGC
CTTTCCCGGAGGGCGGGAGGGAGGGCGGGCGGGTGCAGCTTCTCTTTGCG
GACGGCTCCACGGTCCGAGCGCAGTGCGTCTTGGCTGCCGACGGGGTCCA
CTCAGGTCGGGGGGAGGCGGAGG

Coding sequence (CDS) from alignment at KK037254.1:12186..13858-

>rna9503 ID=rna9503|Name=rna9503|organism=Nannochloropsis gaditana|type=CDS|length=3740bp|location=Sequence derived from alignment at KK037254.1:12186..13858- (Nannochloropsis gaditana)
GCACCTTCTCCTCCCTGTACGGAGAACCCCTCCTCTCCGTCTTCTGGAAA
CACTTGCACGGTCAGCTGGCCCGTGCGGTGCGGGAGGGCGGGAAAGAGGG
CGGGAAAGAGGGCGGGGGGGACGACCGGGGCAGCATCCTCATGGGAAAGG
CCTGCGTGGATGTGGTGCCTTTCCCGGAGGGCGGGAGGGAGGGCGGGCGG
GTGCAGCTTCTCTTTGCGGACGGCTCCACGGTCCGAGCGCAGTGCGTCTT
GGCTGCCGACGGGGTCCACTCAGGTCGGGGGGAGGCGGAGGGTGAAGTCC
GCGGGGAGTGTCATCCGAAAGCAGACCTTTAATACGCCCGCACGGAACGT
CACCGAGGACACAGGGCCGCGCCGCTTCCTAATGACGACACCGAAGTACT
GGACGTGGCTATCGTCGGCGGCGGTATTGGTGGCCTGGCAACTGCCCTGG
CGCTTCAGAAATTGGCACCCGAACTCAGCTTTTGCCTGTATGAACGCTCG
CCAACCCTCCGGGGGGGGGAAGGAACCGCCTTGACGCTCTGGCCGAATGG
ACTCTCGGCGTTGGGGGCGATCGACGCGGCTTTGCTCGCGCAGGCATACT
ACCATGGCGTCTTCCGCGTCTCTCTCTGGCGCTTCTAGGACTGACATCTT
TCCCCGCCAGGGGGGTAGTGCCACGAGATGCCACAGGAAAGGCGGCATCT
CCTTTTTGCTGCTTGCTTCACCTTTCTCATCCTTCTTGCTGGCCTTGGGC
ACCTTCTCCTCCCTGTACGGAGAACCCCTCCTCTCCGTCTTCTGGAAACA
CTTGCACGGTCAGCTGGCCCGTGCGGTGCGGGAGGGCGGGAAAGAGGGCG
GGAAAGAGGGCGGGGGGGACGACCGGGGCAGCATCCTCATGGGAAAGGCC
TGCGTGGATGTGGTGCCTTTCCCGGAGGGCGGGAGGGAGGGCGGGCGGGT
GCAGCTTCTCTTTGCGGACGGCTCCACGGTCCGAGCGCAGTGCGTCTTGG
CTGCCGACGGGGTCCACTCAGGTCGGGGGGAGGCGGAGGGTGAAGTCCGC
GGGGAGTGTCATCCGAAAGCAGACCTTTAATACGCCCGCACGGAACGTCA
CCGAGGACACAGGGCCGCGCCGCTTCCTAATGACGACACCGAAGTACTGG
ACGTGGCTATCGTCGGCGGCGGTATTGGTGGCCTGGCAACTGCCCTGGCG
CTTCAGAAATTGGCACCCGAACTCAGCTTTTGCCTGTATGAACGCTCGCC
AACCCTCCGGGGGGGGGAAGGAACCGCCTTGACGCTCTGGCCGAATGGAC
TCTCGGCGTTGGGGGCGATCGACGCGGCTTTGCTCGCGCAGGCATACTAC
CATGGCGTCTTCCGCGTCTCTCTCTGGCGCTTCTAGGACTGACATCTTTC
CCCGCCAGGGGGGTAGTGCCACGAGATGCCACAGGAAAGGCGGCATCTCC
TTTTTGCTGCTTGCTTCACCTTTCTCATCCTTCTTGCTGGCCTTGGGCAC
CTTCTCCTCCCTGTACGGAGAACCCCTCCTCTCCGTCTTCTGGAAACACT
TGCACGGTCAGCTGGCCCGTGCGGTGCGGGAGGGCGGGAAAGAGGGCGGG
AAAGAGGGCGGGGGGGACGACCGGGGCAGCATCCTCATGGGAAAGGCCTG
CGTGGATGTGGTGCCTTTCCCGGAGGGCGGGAGGGAGGGCGGGCGGGTGC
AGCTTCTCTTTGCGGACGGCTCCACGGTCCGAGCGCAGTGCGTCTTGGCT
GCCGACGGGGTCCACTCAGGTCGGGGGGAGGCGGAGGGTGAAGTCCGCGG
GGAGTGTCATCCGAAAGCAGACCTTTAATACGCCCGCACGGAACGTCACC
GAGGACACAGGGCCGCGCCGCTTCCTAATGACGACACCGAAGTACTGGAC
GTGGCTATCGTCGGCGGCGGTATTGGTGGCCTGGCAACTGCCCTGGCGCT
TCAGAAATTGGCACCCGAACTCAGCTTTTGCCTGTATGAACGCTCGCCAA
CCCTCCGGGGGGGGGAAGGAACCGCCTTGACGCTCTGGCCGAATGGACTC
TCGGCGTTGGGGGCGATCGACGCGGCTTTGCTCGCGCAGGCATACTACCA
TGGCGTCTTCCGCGTCTCTCTCTGGCGCTTCTAGGACTGACATCTTTCCC
CGCCAGGGGGGTAGTGCCACGAGATGCCACAGGAAAGGCGGCATCTCCTT
TTTGCTGCTTGCTTCACCTTTCTCATCCTTCTTGCTGGCCTTGGGCACCT
TCTCCTCCCTGTACGGAGAACCCCTCCTCTCCGTCTTCTGGAAACACTTG
CACGGTCAGCTGGCCCGTGCGGTGCGGGAGGGCGGGAAAGAGGGCGGGAA
AGAGGGCGGGGGGGACGACCGGGGCAGCATCCTCATGGGAAAGGCCTGCG
TGGATGTGGTGCCTTTCCCGGAGGGCGGGAGGGAGGGCGGGCGGGTGCAG
CTTCTCTTTGCGGACGGCTCCACGGTCCGAGCGCAGTGCGTCTTGGCTGC
CGACGGGGTCCACTCAGGTCGGGGGGAGGCGGAGGGTGAAGTCCGCGGGG
AGTGTCATCCGAAAGCAGACCTTTAATACGCCCGCACGGAACGTCACCGA
GGACACAGGGCCGCGCCGCTTCCTAATGACGACACCGAAGTACTGGACGT
GGCTATCGTCGGCGGCGGTATTGGTGGCCTGGCAACTGCCCTGGCGCTTC
AGAAATTGGCACCCGAACTCAGCTTTTGCCTGTATGAACGCTCGCCAACC
CTCCGGGGGGGGGAAGGAACCGCCTTGACGCTCTGGCCGAATGGACTCTC
GGCGTTGGGGGCGATCGACGCGGCTTTGCTCGCGCAGGCATACTACCATG
GCGTCTTCCGCGTCTCTCTCTGGCGCTTCTAGGACTGACATCTTTCCCCG
CCAGGGGGGTAGTGCCACGAGATGCCACAGGAAAGGCGGCATCTCCTTTT
TGCTGCTTGCTTCACCTTTCTCATCCTTCTTGCTGGCCTTGGGCACCTTC
TCCTCCCTGTACGGAGAACCCCTCCTCTCCGTCTTCTGGAAACACTTGCA
CGGTCAGCTGGCCCGTGCGGTGCGGGAGGGCGGGAAAGAGGGCGGGAAAG
AGGGCGGGGGGGACGACCGGGGCAGCATCCTCATGGGAAAGGCCTGCGTG
GATGTGGTGCCTTTCCCGGAGGGCGGGAGGGAGGGCGGGCGGGTGCAGCT
TCTCTTTGCGGACGGCTCCACGGTCCGAGCGCAGTGCGTCTTGGCTGCCG
ACGGGGTCCACTCAGGTCGGGGGGAGGCGGAGGGTGAAGTCCGCGGGGAG
TGTCATCCGAAAGCAGACCTTTAATACGCCCGCACGGAACGTCACCGAGG
ACACAGGGCCGCGCCGCTTCCTAATGACGACACCGAAGTACTGGACGTGG
CTATCGTCGGCGGCGGTATTGGTGGCCTGGCAACTGCCCTGGCGCTTCAG
AAATTGGCACCCGAACTCAGCTTTTGCCTGTATGAACGCTCGCCAACCCT
CCGGGGGGGGGAAGGAACCGCCTTGACGCTCTGGCCGAATGGACTCTCGG
CGTTGGGGGCGATCGACGCGGCTTTGCTCGCGCAGGCATACTACCATGGC
GTCTTCCGCGTCTCTCTCTGGCGCTTCTAGGACTGACATCTTTCCCCGCC
AGGGGGGTAGTGCCACGAGATGCCACAGGAAAGGCGGCATCTCCTTTTTG
CTGCTTGCTTCACCTTTCTCATCCTTCTTGCTGGCCTTGG

Synonyms

Publications