rna950, rna950 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna950
Unique Name	rna950
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3650
Alignment location	CM002456.1:811810..812397 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100022g66.838.mrna
Orig protein id	gnl\|cribi\|Naga_100022g66.838
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:811810..812397 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100022g66	gene913	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna950	rna950-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29739.1	cds950	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:811810..812397-
coding sequence from alignment at CM002456.1:811810..812397-

mRNA sequence

>rna950 ID=rna950|Name=rna950|organism=Nannochloropsis gaditana|type=mRNA|length=3650bp
TTCATTCGTTCATTCATACAATTATAAGAGCTTTGTGACGACCTAAAGCA
AAAACTTCGGGAATATTTTTTTAACGGGTCTCACGAGTCTGTTCAACTAG
CAACGTTGCCGTTTTCTGGCGCGCAGGGAGACCCTCTTCCCGTGAGCAGG
CGCATTGCAAAGGATGATAAAAACCAAAAATACGGCGTTTTATGCTATCA
AAATCCTCTGAACGATGTATATCAAGTTGAATGGCACATGCATGTCATTT
TAGTATATCAAGAACAATTTGTGACGTCCGACGTGACATGATCCGCCGTA
CCGCTTTGTGGGATGTTCCCGTCGCTATAGAGCCCGTCCGGGACCAGCCT
GGGACCGCTCCTTGCACCCTTTTCATGAGGCACCGGGCCGAGTTGTGGAG
GGCAAGATGTTGATAAGCAGACAATTTACGTAAGCATAGGACATTGGTGT
AAGTTTGGACCGCTTTGCTCAATGGCGACAGGGTCCTTGTGGACATGAGA
AGCAGTCTTGAAGTAACGCCGAGTAAGGAAGAAGGAACAGCCAGCTGCTG
TAGGCCGTCTCATTACGTTTTCCCCCGTGCACACGACAGCCAATTACTTT
GCGGCTATGGGCAATAAGCCATCACTCGAAGACCATCTGGTTAACTTGCG
TCTCACCAGCAAGCAAATGGTGCGTGGATCCAAAAAATGCGAATCTAGTG
AGAAAGATGCCAGAAACAAGTTGAAGAAGGCGATACAGAGCCGTAATTTG
GAAGGGGCACGCATTTACGCCCAGAACGCCATTCGAGAAAAAACACAAGC
GCTAAACTATCTTCGATTATCGTCGAGAATAGATGCAGTGGCGGCGCGCT
TGGAGAGCGCGATACGAATGAAACAGGTTACGGGCGCTATGGCTGGTATA
GTTGCGGGCATGGATACGGCGCTTAAGGACATGGACGTTGAGAAGCTTGC
AAAAGTAATGGACCAATTTGAGAAGCAGTTTGAGGACACTGATGTTCGGA
CCGGTTATTTAGAAGGCGCTATCGCCAGCACTACTGCCAGTGCAACACCT
CAGGAAATGGTTGATAGCCTTATTCAAGAGACTGCAGATGCCCATAACCT
GGAACTGGGTACTATGTTAGATAACGCTGGCATGGTGAGTGATAATCTAC
CTGCCGTTGAGGCTCAAGCAACAAATAATCTGGAGCAGCGGTTTGAAGCA
TTGCGAAAATAACGCTTCAAGGATTCAGTGTCTCGGATTGCAGGTAGTGC
ACGGGCATGCACGCTGTAAAATACGGTTTGGAAGTGGTAACGATGGGAAT
GTGTAGATCAAAACAATCATCCCGAATAGAGGACCGAGCAAAAAGGAAGA
AAACACGCATCATCTAGGGACCAGCATCTTAGCCTTGGTATTTTGCTCTG
GGGCCCCAATCTTCATTCCTTGAATAGAATCAATTGAAGTGAATACAATC
GTCGAAATGACGCTACCACATCACCTTCATGGAAGCCGGTGTCATTTTCC
TCATCTTGCAGATGCTCCAGCACTGAGTCCATTATGTCGGCTATAGGACT
AAATCCATCCACAAACTGCCATACCACTAGGTCCAGTTCCCCCCCTTCAA
GCTCAATCCATTGAGGCGTCCCATCTTCACTGCCTCGGGCAACGCGGACG
CTGTGTGCACTTCCCGTCTCTGCATCACAGATTACTTCCTCCAAGACAAC
CCCTTCAGCTTTGCACACAACACAGAGGGCATAGTCTACATTTGATGCGT
CCAAAGGAAATGGTCGGCGCTTAACGAGGAAGCAGCCCATAACAAGCATG
TCGATAGCACCCTCTGTGGCCAGAAAGGAGCGGATTGCGTCCGAAGGAGT
TTCGACAATAGGCTCGGCCCTGAGTGTGTTAAAACTTGTATTAAGTAGCA
TAGGCACACCAGTAAGCTCGAAGAAGGCTTTAAGTAGTCGATAGTACCAG
AGATCATCATCCAGTCGCACTGTTTGTAGCCGTGCAGTGCCATCAACATG
ACAAATTGCCGGAACTCGGTTCCGACGCGAGACACTAACAGGAAGTGTGC
AGGACATGAAAGGCGACTTTGAGCTGTCCTCTTCGGGGAGCGTGCCTGCT
TTGCCTTGGAAACCAACTTCAAACCAGTCCGAGACCGCCTCAGCTAATAC
TGAAGGTGCGAAAGGACGAAAAGCTTCCCTCTTCTTCACCTTGTTCATAT
AAGCGTGCATGGATGCATTTCGTGGATCTGCTAGCAATGAACGATGGCCC
AACGCCCGCGGCCCACATTCACTCCGACCTTGGAACCAGGCCACAATCTT
TCCGTCTGCTAAAGCGTGCGCCGTGGCATTCACCACCGTACTCATATCTC
GTTTGCGCTCTATGTGCAGGAATGGCGACCATGTCGCTAAGGCGCCAATT
TCAATGTCCTCTTCACTGTATGCTTTTCCCTGGTAAGGAGACAGGGGACG
ATATCGTCGGGCAGGGCGCACCGCCATCACCGAACCTCTGCTCGCAGCAG
TTAAGTGTCAGGACGGGGTAATTTGCTTATTCTTTCATCGATCACGATTG
TAAGCAAAACTTGCTCTCTTTCCTTTAGCTTCTTACCTGTGACGTGAAGA
GGATACTGCGAAGCCACCGGCCGCTGTGGCGGCAGCAAAGCCCCATAGCG
CACATCCGATGGAAATGCCTTCATCACCGGGATAGGGTGGAATAAAAACG
TCTTCAAATCCTAGTTCTCTAATAATACGACCGTTTAAGACACTATTTTG
ACCTACGCCACCACAAATGCATAAGTTCGCAGCTCCTGTTGCTTGCTTGA
GGTAACGGATCCAAGACATCGCCACATTCTCCAAATCTTCCTGAACGCGG
CGCGCTATGTGCGCATAGCATTTTGTTTTTTTCTCATCTTCTTCATGCCA
TTCATTTGCTTGCGGCAAGGAGTGTAATGCCTTCCAATCAATGCGAAACG
TCTCCGACGCCAAATTTCCTTCCATAAAACGGGGCAATCGCGCCGCTTCG
TCAGCATTTCCAAAGCTCGACAGACCCATGACTTTCCCACAAGCATTCCA
ATCACCGAAAATATGGCTGGAGATGCGAGAATACACGGCACCAATTGATT
CCATGTTTTCAAATCCGTGATTATATAGCTCTGAGGGGCTGTGATGGTGA
TGATGATGACAGCCGATAAGGCAAGACATGTAAGATAAAATAGGGACCAC
GGAGAAACAAGAAGCCACCTATACAAGCATTGCAACCGTAGTTTGTTGAG
AAACAAATGCATATGATGTAGCGCATTTTCTAGACATTACTGATGGGAAT
ATATTCACCTCGCTTCCATTGTGTAGCGCTTGAACACGAGAGTAAGATTA
TCTCCATCGAAGTAATACGCACTTTCTGCTTCGCGGTAATCAAGCAGAGG
ATCCAACTTCGCTGGCACTTGCATAAATTTAGCGTGCCGAGGTAAATATA
AGTCACTCGTGTACCCGAAATCTTCGTCCCTCAATCCTAGAGCCATCGAC
TTCTGCTGCTCCCCCATTCCGTCCATTACAACGATGAGCCCTCGCTCGAA
AGGGGCTTGCGGGAACACAGACCATGCGTGAGCTAGATGATGGCTTAGCT
CATGTCGACAGCTCGGATTCAATGAGGCGAAAGTAGAAGCCTCTTCCATG

protein sequence of rna950

>rna950-protein ID=rna950-protein|Name=rna950|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MSRSNIAYTSTTNARWMRLPFCMAQHWMIASSVWNLIGGIILLDVMDEER
VGVKSAMKNAWITMRVVADMAERPCTILCRTQVRKRLRWRTQYPAGGNSA
PEWYDRKQVHYQVFCTKNSKRVPCDLKCSIAVPFVPSRAFQYI

mRNA from alignment at CM002456.1:811810..812397-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna950 ID=rna950|Name=rna950|organism=Nannochloropsis gaditana|type=mRNA|length=588bp|location=Sequence derived from alignment at CM002456.1:811810..812397- (Nannochloropsis gaditana)
ATGAGTAGGTCGAATATAGCATGTATTTCCACCCCTATATATATGTATAT
ATAAATATTATTTCTTTCCAGATACTTCAACCACCAATGCGCGTTGGATG
CGGTTGCCTTTTTGCATGGCACAACATTGGATGATCGCATCATCCGTGTG
GAACTTGATTGGGGGTATCATCCTTCTCGACGTTATGGACGAGGAGAGAG
TGGGGGTCAAGTCCGCGATGAAAAACGCATGGATTACGATGAGGGTCGTG
GCGGATATGGCAGAGCGGCCATGTACCATTCTGTGCCGGACCCAAGTGCG
GAAGCGCCTCAGGTGGCGAACCCAGGTAAATGCTTTTTTGCTCTTTTGTA
GGGACATTTTCTTTCGTTCTCCTGTAAAATTATCATGATTTTTAGAAAAT
TTGATGTCTTTTGCATTTGTTTGAAAATTCAGTATCCAGCAGGCGGCAAC
AGCGCCCCGGAGTGGTATGATCGAAAGCAGGTTCATTACCAGGTTTTTTG
CACGAAGAATTCAAAACGTGTACCGTGTGATTTGAAATGTTCCATTGCCG
TTCCTTTTGTTCCTTCTAGAGCGTTTCAATACATATGA

Coding sequence (CDS) from alignment at CM002456.1:811810..812397-

>rna950 ID=rna950|Name=rna950|organism=Nannochloropsis gaditana|type=CDS|length=1296bp|location=Sequence derived from alignment at CM002456.1:811810..812397- (Nannochloropsis gaditana)
TATCCAGCAGGCGGCAACAGCGCCCCGGAGTGGTATGATCGAAAGCAGGT
TCATTACCAGGTTTTTTGCACGAAGAATTCAAAACGTGTACCGTGTGATT
TGAAATGTTCCATTGCCGTTCCTTTTGTTCCTTCTAGAGCGTTTCAATAC
ATATGAATACTTCAACCACCAATGCGCGTTGGATGCGGTTGCCTTTTTGC
ATGGCACAACATTGGATGATCGCATCATCCGTGTGGAACTTGATTGGGGG
TATCATCCTTCTCGACGTTATGGACGAGGAGAGAGTGGGGGTCAAGTCCG
CGATGAAAAACGCATGGATTACGATGAGGGTCGTGGCGGATATGGCAGAG
CGGCCATGTACCATTCTGTGCCGGACCCAAGTGCGGAAGCGCCTCAGGTG
GCGAACCCAGATGAGTAGGTCGAATATAGCATTATCCAGCAGGCGGCAAC
AGCGCCCCGGAGTGGTATGATCGAAAGCAGGTTCATTACCAGGTTTTTTG
CACGAAGAATTCAAAACGTGTACCGTGTGATTTGAAATGTTCCATTGCCG
TTCCTTTTGTTCCTTCTAGAGCGTTTCAATACATATGAATACTTCAACCA
CCAATGCGCGTTGGATGCGGTTGCCTTTTTGCATGGCACAACATTGGATG
ATCGCATCATCCGTGTGGAACTTGATTGGGGGTATCATCCTTCTCGACGT
TATGGACGAGGAGAGAGTGGGGGTCAAGTCCGCGATGAAAAACGCATGGA
TTACGATGAGGGTCGTGGCGGATATGGCAGAGCGGCCATGTACCATTCTG
TGCCGGACCCAAGTGCGGAAGCGCCTCAGGTGGCGAACCCAGATGAGTAG
GTCGAATATAGCATTATCCAGCAGGCGGCAACAGCGCCCCGGAGTGGTAT
GATCGAAAGCAGGTTCATTACCAGGTTTTTTGCACGAAGAATTCAAAACG
TGTACCGTGTGATTTGAAATGTTCCATTGCCGTTCCTTTTGTTCCTTCTA
GAGCGTTTCAATACATATGAATACTTCAACCACCAATGCGCGTTGGATGC
GGTTGCCTTTTTGCATGGCACAACATTGGATGATCGCATCATCCGTGTGG
AACTTGATTGGGGGTATCATCCTTCTCGACGTTATGGACGAGGAGAGAGT
GGGGGTCAAGTCCGCGATGAAAAACGCATGGATTACGATGAGGGTCGTGG
CGGATATGGCAGAGCGGCCATGTACCATTCTGTGCCGGACCCAAGTGCGG
AAGCGCCTCAGGTGGCGAACCCAGATGAGTAGGTCGAATATAGCAT

Synonyms

Publications