rna9491, rna9491 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9491
Unique Name	rna9491
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1973
Alignment location	KK037253.1:417606..419982 +

Link to JBrowse

Properties


Property Name	Value
Product	nudix
Orig transcript id	gnl\|cribi\|Naga_100429g3.5113.mrna
Orig protein id	gnl\|cribi\|Naga_100429g3.5113
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:417606..419982 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100429g3	gene9212	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9491	rna9491-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21211.1	cds9460	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:417606..419982+
coding sequence from alignment at KK037253.1:417606..419982+

mRNA sequence

>rna9491 ID=rna9491|Name=rna9491|organism=Nannochloropsis gaditana|type=mRNA|length=1973bp
ATGCTGCCTCCTAGCGCATCCCTCCATTCGGCCTTTATCCTGCCACCTTC
GTCATCGACCTTCACACTCCCTTCTGCCTCCTTCTCGCCCCTTTCACCCG
TCCCGGCCGCAAGCTCTCTCTCTTTCAACGCCCTCTACTTACGACGTAAG
CACCAGCTCGCGCCCCTACAGCCCCATCGCGCACGGGCTCGCCCCCTCGC
CTTTTGGCAGCGACAGACAGAGGAGAGGGAAGTGGCCGAAGAGGCGGAGG
AAATGAGCGACGATGAGAAAGAAGCAATACGATTGCAAAAGATACTGGAC
AAGCGCCTGGTGCTGGCTGCGCAAGCTCTTCAGGAAGACTGGCCCGTGTA
CCTGTTCCTGATCGGCGTCCAAGCCATCCCTGTGCTGGCGGGCGGGCTCG
TCGGAGGCAACTTCCTGTTCTTCTGGCTGACGGCCTGCACCTGCGTGTAT
TTGGGCGCCAAAAGGAGCAGCGCCGTGGCTCGGGCGGGGGAGATTTTCCA
GGCGGTCACCACCCGCAACGCCTTCGCCGCCCCCATCGCGGCCAGCATCA
GCCTCTTCGGGACCTACTACCTCCTCAAGAACCAATTCGACATCGCCACT
GTCTACCAGCTCATGACCACCTTCTTCGGAGGCTACTGCCTGCGCGACGT
ACTCATCTCCACCCTGCTGGCTCTGGGTCTCGGCGGCTCGATCCAGTCCT
TCTATGCCCCCCCCCCCAAACCGATCCCCGCCCGCCGCGGCCCCTTCTCC
TCGCCTGCCCCTCCCCCTCCTTCTCCTCCCGCCTCCTCTTCTTCCTTCCC
GCCCTTGCGAGACCCCGACGAGGGCGAGCTCGACGGCTTGAAGCTGGCCG
CAACGCTGCTCTCGGGGGGCGTCTGCGCCACCTACCTGTGGGGGCCGGCG
GCGGCAGTGGCGGCGGCCGGGGCAAGCGGCGGAGCCTCCGGCGCCGTATT
TCTCGGGGCCATCAGCGCCCTCCTCGCTGCCAACTTTATCACCAGCGGCA
TTGCCCTTCAGGCGCAGGCCTCCATCCCGATCAAGTCCTTGAAGCCGGCG
CTCATCTTCCTGACGGGGCTCTTCCTTTACGACATCTACTTTGTTTTCTT
TTCCCCGGGAGGCGTCATGGAGAGCGTCGCCACCAGCCTGGAGGGGCCTG
TCAAGCTGCTATCCCCGCGGGCGGCGGTGAGAAGGGAGGGTCGCCGCCCG
ACGAAAGAGGGCATTACGTCTCCATCTCCTCCTCGCTTCCAGTCACGCTT
CTCGCGTTTGACCGCGTTCTTCTCCCCCTGTCCCTATCCGCAATCGGCTC
ATCCCTCCCTCCCGTCCTCCACACGCATTCTGCCCTCTCCCCTGGGCCCT
CCAGGCTGCCACAGCCCCCGGCCAGTACCCCTTCTCCATCCTGGGACTCG
GCGACATCGTGGTGCCGGGCCTCTTCGTCGGTCTTCTCAAGCGGATCGAT
GAAGGTGGGGTGACGATGAGGTAGTGGTCAGAATCGACAGGGAGCAAAGG
CTTTTGTGCACGATCTCCTGGGTGGAACAAGTTCTGCCTTACGAACCAGC
GTCTCGGCCCCTTCTGCTTTCCGTCGGACCGACAACTTTCTCGTAGAAGC
GTTCTGATTTCACGTATTGTTAAAAAAATACACGCACGCTATTTTTTCAT
AATGTTTTACAGGTCAGGACGGATTAGGCACCAAGAACACCTTCTTTGCG
GCCGGCATGGGAGGGTACGCTCTCGGACTTCTCCTCACCTTTTCTGCGAA
CATTCTCATGCATCGGGGCCAGCCAGCTTTACTATACATTGTGCCATCCC
TTATTGCAGCAGCTTTAGGTACAGCTGCTGTGACAGGCCGATGGGAAGAA
GTGTGGACGTTCAACAGCGAAGGGGGGGAGGTAGAAGGGTCAGGGGAAGC
GTAGAAAATGAATGACACCGGTCAGAAGAAGAGACAATGACAATAAAATG
TAATGCGGCTCTTCTTCCTTCTG

protein sequence of rna9491

>rna9491-protein ID=rna9491-protein|Name=rna9491|organism=Nannochloropsis gaditana|type=polypeptide|length=406bp
MSVSPPHTAKTDCSMRANTGCCIFSLLHHILGVLLLALLFITATMATSPT
LRRAKSCTSWSRSFFPPVKAPAMGFMAANGGMARRYWTTKGLGVGRRLLM
WSDASTSGFSGAGSTANNEKRNAGSIQGPAEAGDEVFRTGLPPLHWPSPD
AETVSGNRGADQSSAPAPTVNLGKNNKRKGAASLPPIKGALPNKSKSTGP
PASNVNTGTGEGAYAGDVSRGSSSSREEISINAYPLHARAAVAVTIATKP
SAFEKTTRYCVVKRSKEPGKGKWSLPGGSVELGEETLLAAAREAREETSL
SKEDLRFYPHAVCTTDAIYRREDGARGVLFHYVITHQAAWITTGAMDRAR
AGDDAAELTFKTLEELKAMSLEGLLVGNVCDVVMRVERLVAKGVINIDFD
LVRLEA

mRNA from alignment at KK037253.1:417606..419982+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9491 ID=rna9491|Name=rna9491|organism=Nannochloropsis gaditana|type=mRNA|length=2377bp|location=Sequence derived from alignment at KK037253.1:417606..419982+ (Nannochloropsis gaditana)
ACAGACGGCCAGTCAGTCCCCTTTGATGAAAAGCGCAATTCTCAGTATCG
TCTTAATGCTCATTTTAAGACTCGGTGAAGTTGTAATATTTCACTCAACA
GCTGTGGCATGCACGCTTACGTGGTTAGGGCGTCTCGGGTCAGGAACAAC
ACTACGATACCCGGCTCGAGACCCTCGCCCAAGGCCCTCACTAGCAACAT
TCAGACTGTCACGACACAAAGGAATGCCACCACGCCGGCAGTACCTAGTG
AAGCTGTGCGAGGGATGTCCGGTCGTTTGAAGCATGGTTGTCCCAAAGGA
ATCAAAAAGTCGCATGGCCAAGCCAGCTGAGAGGAACAACTTGCAGATAC
ATGTCAGGCTGGGGCTTCCAGAGTCCCTCTGCATGGACAAAATGTCTTAT
CCCTTAGACAGCCTGGAAATTTGTTTCGCACAAAATTGCGGGAGACATGC
TTACTTATGTCTGTATCTCCTCCGCACACTGCCAAGACAGATTGTAGTAT
GCGCGCAAACACAGGGTGCtgcattttttccctcttgcatCACATTTTAG
GCGTGTTacttctcgccctcctcttcataaCTGCAACAATGGCAACATCA
CCAACACTCCGGAGAGCTAAAAGTTGTACCTCTTGGTCGAGaagcttctt
ccctcctgtgaAGGCACCAGCGATGGGTTTTATGGCCGCAAATGGAGGCA
TGGCTCGGAGGTACTGGACGACGAAAGGGCTGGGCGTAGGCCGGAGACTA
CTCATGTGGTCAGACGCAAGTACAAGTGGTTTTAGTGGCGCAGGCAGCAC
TGCCAACAACGAGAAGAGAAACGCTGGAAGCATTCAGGGTCCTGCGGAAG
CAGGGGATGAAGTCTTTCGCACCggcttgcctcccctccactgGCCTTCA
CCAGATGCTGAGACCGTCTCCGGGAATCGAGGTGCGGATCAGTCATCAGC
CCCTGCACCCACCGTCAATTTAGGCAAAAACAATAAAAGAAAGGGCGCTG
CATCGCTTCCACCTATAAAAGGCGCCTTGCCGAACAAAAGCAAAAGCACG
GGCCCGCCCGCCAGCAACGTCAATACCGGAACCGGAGAGGGTGCGTATGC
CGGCGACGTCAgcagaggcagcagcagcagcagagaaGAAATAAGTATAA
ATGCATATCCGCTGCACGCTCGGGCCGCGGTGGCCGTGACCATTGCCACG
AAACCCTCCGCCTTTgagaaggtagggagggaggggaaggggaagacagg
aCCGGTGGGTATCTGGTCGCTGGCTTTTGCCTTTTGTTTGGTTTGGACGC
ATGTGACAGCCGTCGGATATCCGAGATTCTGGGGTCATGCCCCTCAAAGA
ATGTGTCGGCGGCAGACGAGGTCGCGATTTCCTGTCCACcccggcctctc
ccaccttaTCGCTACCCTCTGACCCATCCAtcttccgctttccccaCACA
TGCCACTCCATATTGGGCTCAGACCACCCGTTACTGCGTAGTGAAGCGCA
GCAAAGAGCCcggaaaagggaagtggagccTGCCGGGGGGCAGCGTGGAG
CTCGGGGAGGAGACCCTTCTGGCCGCCGCGCGCGAGGCCAGAGAGGAGAC
CAGTCTTTCCAAGGAGGACCTCCGCTTTTATCCGCACGCGGTATGCACCA
CCGATGCCATCTacaggcgggaggacggggcccggggggtCCTCTTCCAT
TACGTGATCACGCACCAGGCAGCTTGGATCACCACCGGCGCCATGGACCG
GGCGCGCGCAGGGGACGATGCGGCGGAGCTGACGTTCAAGACATTGGAGG
AGCTCAAGGCTATGTCCTTGGAAGGACTGCTGGTGGGGAATGTCTGCGAC
GTGGTGATGCGGGTGGAGCGCCTCGTGGCGAAAGGTGTCATCAACATCGA
CTTCGACCTGGTCAGACTGGAGGCTTGACCCCAGGGTCACGAGCCTAGCG
ACACCCTTgtgtcctccccgcctttgcAAGCCACGGACTTTGTTCGgcct
cccagcccccttgGCGGACGAGAGAAGAGTCGAGAGAAATTCGGGACCGG
GAGTGTGTGGAGTTGCAGGTTGGAGGAGTTTGGCGTCAGCGGATGAGGCC
CGATgttgtcgaggagggaaggagatgcaATAGGAGATGAGAGGAATGAA
TATTTCGTAAACTCTGGAGCAAAAAACAGTGGACTTGGCGCTATGGTGGA
GGAATCTCGGTCAGTTAATCATCCCCTGCGGTTTTAAAAAGGGTCAAATG
CGACGTCAGGCTTTGATCCATGCGGGAGGGTATAGGTGGCCAGATGGTGG
CGAGAGGCGATACGTGAATTTGCGTGTTGGTCAATGAGAGGATGTCTAAA
AGAAGCATACCTGTACAGATTTTTGTT

Coding sequence (CDS) from alignment at KK037253.1:417606..419982+

>rna9491 ID=rna9491|Name=rna9491|organism=Nannochloropsis gaditana|type=CDS|length=2442bp|location=Sequence derived from alignment at KK037253.1:417606..419982+ (Nannochloropsis gaditana)
ATGTCTGTATCTCCTCCGCACACTGCCAAGACAGATTGTAGTATGCGCGC
AAACACAGGGTGCtgcattttttccctcttgcatCACATTTTAGGCGTGT
TacttctcgccctcctcttcataaCTGCAACAATGGCAACATCACCAACA
CTCCGGAGAGCTAAAAGTTGTACCTCTTGGTCGAGaagcttcttccctcc
tgtgaAGGCACCAGCGATGGGTTTTATGGCCGCAAATGGAGGCATGGCTC
GGAGGTACTGGACGACGAAAGGGCTGGGCGTAGGCCGGAGACTACTCATG
TGGTCAGACGCAAGTACAAGTGGTTTTAGTGGCGCAGGCAGCACTGCCAA
CAACGAGAAGAGAAACGCTGGAAGCATTCAGGGTCCTGCGGAAGCAGGGG
ATGAAGTCTTTCGCACCggcttgcctcccctccactgGCCTTCACCAGAT
GCTGAGACCGTCTCCGGGAATCGAGGTGCGGATCAGTCATCAGCCCCTGC
ACCCACCGTCAATTTAGGCAAAAACAATAAAAGAAAGGGCGCTGCATCGC
TTCCACCTATAAAAGGCGCCTTGCCGAACAAAAGCAAAAGCACGGGCCCG
CCCGCCAGCAACGTCAATACCGGAACCGGAGAGGGTGCGTATGCCGGCGA
CGTCAgcagaggcagcagcagcagcagagaaGAAATAAGTATAAATGCAT
ATCCGCTGCACGCTCGGGCCGCGGTGGCCGTGACCATTGCCACGAAACCC
TCCGCCTTTgagaagACCACCCGTTACTGCGTAGTGAAGCGCAGCAAAGA
GCCcggaaaagggaagtggagccTGCCGGGGGGCAGCGTGGAGCTCGGGG
AGGAGACCCTTCTGGCCGCCGCGCGCGAGGCCAGAGAGGAGACCAGTCTT
TCCAAGGAGGACCTCCGCTTTTATCCGCACGCGGTATGCACCACCGATGC
CATCTacaggcgggaggacggggcccggggggtCCTCTTCCATTACGTGA
TCACGCACCAGGCAGCTTGGATCACCACCGGCGCCATGGACCGGGCGCGC
GCAGGGGACGATGCGGCGGAGCTGACGTTCAAGACATTGGAGGAGCTCAA
GGCTATGTCCTTGGAAGGACTGCTGGTGGGGAATGTCTGCGACGTGGTGA
TGCGGGTGGAGCGCCTCGTGGCGAAAGGTGTCATCAACATCGACTTCGAC
CTGGTCAGACTGGAGGCTTGAATGTCTGTATCTCCTCCGCACACTGCCAA
GACAGATTGTAGTATGCGCGCAAACACAGGGTGCtgcattttttccctct
tgcatCACATTTTAGGCGTGTTacttctcgccctcctcttcataaCTGCA
ACAATGGCAACATCACCAACACTCCGGAGAGCTAAAAGTTGTACCTCTTG
GTCGAGaagcttcttccctcctgtgaAGGCACCAGCGATGGGTTTTATGG
CCGCAAATGGAGGCATGGCTCGGAGGTACTGGACGACGAAAGGGCTGGGC
GTAGGCCGGAGACTACTCATGTGGTCAGACGCAAGTACAAGTGGTTTTAG
TGGCGCAGGCAGCACTGCCAACAACGAGAAGAGAAACGCTGGAAGCATTC
AGGGTCCTGCGGAAGCAGGGGATGAAGTCTTTCGCACCggcttgcctccc
ctccactgGCCTTCACCAGATGCTGAGACCGTCTCCGGGAATCGAGGTGC
GGATCAGTCATCAGCCCCTGCACCCACCGTCAATTTAGGCAAAAACAATA
AAAGAAAGGGCGCTGCATCGCTTCCACCTATAAAAGGCGCCTTGCCGAAC
AAAAGCAAAAGCACGGGCCCGCCCGCCAGCAACGTCAATACCGGAACCGG
AGAGGGTGCGTATGCCGGCGACGTCAgcagaggcagcagcagcagcagag
aaGAAATAAGTATAAATGCATATCCGCTGCACGCTCGGGCCGCGGTGGCC
GTGACCATTGCCACGAAACCCTCCGCCTTTgagaagACCACCCGTTACTG
CGTAGTGAAGCGCAGCAAAGAGCCcggaaaagggaagtggagccTGCCGG
GGGGCAGCGTGGAGCTCGGGGAGGAGACCCTTCTGGCCGCCGCGCGCGAG
GCCAGAGAGGAGACCAGTCTTTCCAAGGAGGACCTCCGCTTTTATCCGCA
CGCGGTATGCACCACCGATGCCATCTacaggcgggaggacggggcccggg
gggtCCTCTTCCATTACGTGATCACGCACCAGGCAGCTTGGATCACCACC
GGCGCCATGGACCGGGCGCGCGCAGGGGACGATGCGGCGGAGCTGACGTT
CAAGACATTGGAGGAGCTCAAGGCTATGTCCTTGGAAGGACTGCTGGTGG
GGAATGTCTGCGACGTGGTGATGCGGGTGGAGCGCCTCGTGGCGAAAGGT
GTCATCAACATCGACTTCGACCTGGTCAGACTGGAGGCTTGA

Synonyms

Publications