rna9488, rna9488 (mRNA) Nannochloropsis gaditana

Overview
Namerna9488
Unique Namerna9488
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length368
Alignment locationKK037253.1:407013..408522 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100794g1.1553.mrna
Orig protein idgnl|cribi|Naga_100794g1.1553
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:407013..408522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100794g1gene9209Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9488rna9488-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21216.1cds9457Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9488 ID=rna9488|Name=rna9488|organism=Nannochloropsis gaditana|type=mRNA|length=368bp
TAGCCACTGGTGAATTTAGAATGGCAGCAAACATCGATCCCGTGGCACAG
TCATGCTTTGAAGAGGTGGTGGCTGCCCTGGATCTACCAAACGATGTCAA
AACAAGGGCGACCGAGCACTTGACCGCCGTCTTGGCCCTGGGGATCCCCC
CCGACGCGCATCGCCCCGGGCCGTGGGTGTGGGCGGCATGCAGCATCTTT
ATGGCGCTTTACGAGCACAACATGCCGGGAGGAAGGACGCTGGGCGATGT
GCTGAAGGCGACGGGCCTGGAGCGGATGGACGAGTTCCTCTCCCACCTGA
CCCTCCTCTCTCAGCGGCTCCCGAGACTCTCCGAGGAGCTGCAGGCCCTA
GCGGGCGGATTGCGGTAG
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protein sequence of rna9488

>rna9488-protein ID=rna9488-protein|Name=rna9488|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MGGSDHCPCVTLPLPSSLPPSLPPQPPYPYQEVMPKLTPRTRVLYAFGES
PAQDLDLINRAINRRGCEASSSLPHNGEGREAGNGGRWEGREKSQKKLKL
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mRNA from alignment at KK037253.1:407013..408522+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9488 ID=rna9488|Name=rna9488|organism=Nannochloropsis gaditana|type=mRNA|length=1510bp|location=Sequence derived from alignment at KK037253.1:407013..408522+ (Nannochloropsis gaditana)
GGGAGCTGGAGCAAGTGAGTTCGCTTAGCCTCTCCCACTCGTCTCCTCAT
CCCCCGTAATGACTCATCACCGCATGAACTATCCGCATGCTCCTTGAATT
GCCCTtatcccttccttcactcactcactcactcactcactcactcactc
acccactcactcactcactcactcactcactcgctccctccctctctccc
ttccagcctcctccccggccatCTCggccctgcctcttccctcgccgATC
CGATCTCCTCAGCGGCGCATCCGCCACTCGAACGTGTACCtgaccaccac
cagcaccaccggAGCCCTCCTCGGACCCAGCATggtgccgccctcctcct
cctcctcctccccccctccttccaccctctcgcccttccgccccgccctc
ccttcctccctccatgtcgCCGCACATCCaacccgccctctcccttcctt
ctcctcctccttcccttcctcccttccctccccgagggcgggcggggagg
acatTTCTCGGACGCCACCTCCACAGCCGTaccatggggaggaaggggag
ggggagggagggatgagtcCGCCGCGAAACGCGCGCGGCCCTTTGCAGGT
ATGGAGGCAGCGCTGAGAGGAATCGGGCTTGGGACACGATGTCGACGTAG
TACTTACTCTCGACCATAGATAAAATCACGTTTGCTCGGATTTCCTAGCA
TCCTGTCCATGGGCGGATCCGACCACTGCCCCTGCGTcactcttcccctc
ccttcctcccttcctccatccctccctccccagccccccTATCCCTATCA
AGAGGTTATGCCCAAGCTCACGCCCCGTACCCGCGTGCTGTATGCCTTTG
GCGAGGTgcgtcccgcccgcctccctcctcctcagccagcccccctccct
tcttccctccttcctcttgcctctcttGCCTTCCGTCCTTActcccggcc
ctccttcccctcacgTGTCCCGTCTCTGCGggcgtctctccctccctccc
ttcctcaacAGTCTCCGGCCCAGGACCTGGACCTGATCAACAGAGCCATC
AACAGACGCGGGTGCgaggcttcttcctcgctccctcacaacggggaagg
aagggaggcggggaacgggggacggtgggaggggagggagaagtcgCAGA
AAAAGCTGAAGCTgtaaggggaaaggaagaattTTGTACGGGAGAGGCGA
GACAgataaagggaggggcgggaggacgaaaggCGAGTGGCGAGAGGGCC
CTAGCGGAGACGACAGTCGGCGTGCATTTAATCGGAGAAATAGGGAGACA
CCACTCTGGAGGTTGGGACAGCTGGAGCGCTGTGACGGCCCGGGGAAGGT
GCTTCCGCACAAGAAGGATCCGAAATAGTCGCAGAGTGTTGCGAGGTAAC
GATTATGACGCGTCATTCCATTCTTTCTTAAATCGTTTAATTCTGTTTCG
cggcggcaggagggggatTTAAACAGCCGCATCACCTGGTTCGCTAATTA
ATGGGCCTTC
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Coding sequence (CDS) from alignment at KK037253.1:407013..408522+

>rna9488 ID=rna9488|Name=rna9488|organism=Nannochloropsis gaditana|type=CDS|length=606bp|location=Sequence derived from alignment at KK037253.1:407013..408522+ (Nannochloropsis gaditana)
ATGGGCGGATCCGACCACTGCCCCTGCGTcactcttcccctcccttcctc
ccttcctccatccctccctccccagccccccTATCCCTATCAAGAGGTTA
TGCCCAAGCTCACGCCCCGTACCCGCGTGCTGTATGCCTTTGGCGAGTCT
CCGGCCCAGGACCTGGACCTGATCAACAGAGCCATCAACAGACGCGGGTG
Cgaggcttcttcctcgctccctcacaacggggaaggaagggaggcgggga
acgggggacggtgggaggggagggagaagtcgCAGAAAAAGCTGAAGCTg
taaATGGGCGGATCCGACCACTGCCCCTGCGTcactcttcccctcccttc
ctcccttcctccatccctccctccccagccccccTATCCCTATCAAGAGG
TTATGCCCAAGCTCACGCCCCGTACCCGCGTGCTGTATGCCTTTGGCGAG
TCTCCGGCCCAGGACCTGGACCTGATCAACAGAGCCATCAACAGACGCGG
GTGCgaggcttcttcctcgctccctcacaacggggaaggaagggaggcgg
ggaacgggggacggtgggaggggagggagaagtcgCAGAAAAAGCTGAAG
CTgtaa
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Synonyms
Publications