rna9487, rna9487 (mRNA) Nannochloropsis gaditana

Overview
Namerna9487
Unique Namerna9487
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length611
Alignment locationKK037253.1:403845..404574 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101418g1.2152.mrna
Orig protein idgnl|cribi|Naga_101418g1.2152
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:403845..404574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101418g1gene9208Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9487rna9487-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21218.1cds9456Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9487 ID=rna9487|Name=rna9487|organism=Nannochloropsis gaditana|type=mRNA|length=611bp
GTATCCTCCCCCTCTCTCCCGCGCAGGATCTCTCTGGTCCGCGTAGAGAT
CTTGACGGGACGCACCCACCAGATCCGCGTGCACCTCACTCATCTGGGCC
ATCCAGTTCTTGGCGATGACGTCTACTGCTCTGCGGACTTCACGCGCAAG
AACACACACCTCCGACGACTCGGCCTGAAGCGCGTCCTCCTCCACGCTTA
CTCCCTCGCCTTCGTCCACCCGGCCCTGCAGACGCCCCTCACCCTCCTCG
CCCCCCTCCCGCGGGACATGCTCTCCGTCGCCCAGTTCGTCCTCAGCAAA
GGTCCTGGGCCTACGGGCAAACACGAGGACAGTCGGAAGCTCCTTCGACT
GCTTCGAGACGGTGAACCCCTGACGCCGGCTTTGGGTCATGACGTCGCGT
CCCCGGTGCCGAGCACGGCAATAGCAAGCAATGCCCCTTCCATTGGGGCA
ACTGGAGGGGAGGCGGCAGAGGCGAGGGATCTGGAGGAGGAAGAGTGGGA
CGAGCAAGACTAGAATGGAGTGGTTGCATGTGCGTGGAGAGAAGGCGTTT
CTTACATTTTGACTCCTGTAAAAAGATATTCGGCATAAGGAACACCTTCT
CGCTAGATGGG
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protein sequence of rna9487

>rna9487-protein ID=rna9487-protein|Name=rna9487|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MAANIDPVAQSCFEEVVAALDLPNDVKTRATEHLTAVLALGIPPDAHRPG
PWVWAACSIFMALYEHNMPGGRTLGDVLKATGLERMDEFLSHLTLLSQRL
PRLSEELQALAGGLR
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mRNA from alignment at KK037253.1:403845..404574+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9487 ID=rna9487|Name=rna9487|organism=Nannochloropsis gaditana|type=mRNA|length=730bp|location=Sequence derived from alignment at KK037253.1:403845..404574+ (Nannochloropsis gaditana)
TAGCCACTGGTGAATTTAGAATGGCAGCAAACATCGATCCCGTGGCACAG
TCATGCTTTgaagaggtggtggctgCCCTGGATCTACCAAACGATGTCAA
AACAAGGGCGACCGAGGTGAAGAAAAGGGCGTGCGGAAGTGttccaggag
gagggtatTTTACTTCTTTGAGGGAGCTTCCATAGAAACACAAAAACATG
TAGCGTCGCTCACCAATTTCTTTCCTATCGCCTGTCTTATATCTTGTCTG
GGATGTTTGGTGTTTTCATGCAGCACTTGACCGCCGTCTTGGCCCTGGGG
ATCCCCCCCGACGCGCATCGCCCCGGGCCGTGGGTGTGGGCGGCATGCAG
CATCTTTATGGCGCTTTACGAGCACAACatgccgggaggaaggacgctgG
GCGATGTGCTGAAGGTATGGATGGGCGTAAGGAGGAGCGTGGCAAAAGCG
AGGATGGCGAGCTTGGAAGAGatatgaagaggaagaggaggaggagggga
gggtggattgggggggaaatggcgAGTCGACTGCACGATTGAATGCCAGC
GTTGGTTCATCCAAAGGCAATTTCCACATCCACCGACGCGTGCTTTTGAT
AATGTGCAAATACCCGCAGGCGACGGGCCTGGAGCGGATGGACGagttcc
tctcccacctgaccctcctctctcagcGGCTCCCGAGACTCTCCGAGGAG
CTGCAGGCCCTAGCGGGCGGATTgcggtag
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Coding sequence (CDS) from alignment at KK037253.1:403845..404574+

>rna9487 ID=rna9487|Name=rna9487|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at KK037253.1:403845..404574+ (Nannochloropsis gaditana)
ATGGCAGCAAACATCGATCCCGTGGCACAGTCATGCTTTgaagaggtggt
ggctgCCCTGGATCTACCAAACGATGTCAAAACAAGGGCGACCGAGCACT
TGACCGCCGTCTTGGCCCTGGGGATCCCCCCCGACGCGCATCGCCCCGGG
CCGTGGGTGTGGGCGGCATGCAGCATCTTTATGGCGCTTTACGAGCACAA
CatgccgggaggaaggacgctgGGCGATGTGCTGAAGGCGACGGGCCTGG
AGCGGATGGACGagttcctctcccacctgaccctcctctctcagcGGCTC
CCGAGACTCTCCGAGGAGCTGCAGGCCCTAGCGGGCGGATTgcggtagAT
GGCAGCAAACATCGATCCCGTGGCACAGTCATGCTTTgaagaggtggtgg
ctgCCCTGGATCTACCAAACGATGTCAAAACAAGGGCGACCGAGCACTTG
ACCGCCGTCTTGGCCCTGGGGATCCCCCCCGACGCGCATCGCCCCGGGCC
GTGGGTGTGGGCGGCATGCAGCATCTTTATGGCGCTTTACGAGCACAACa
tgccgggaggaaggacgctgGGCGATGTGCTGAAGGCGACGGGCCTGGAG
CGGATGGACGagttcctctcccacctgaccctcctctctcagcGGCTCCC
GAGACTCTCCGAGGAGCTGCAGGCCCTAGCGGGCGGATTgcggtagATGG
CAGCAAACATCGATCCCGTGGCACAGTCATGCTTTgaagaggtggtggct
gCCCTGGATCTACCAAACGATGTCAAAACAAGGGCGACCGAGCACTTGAC
CGCCGTCTTGGCCCTGGGGATCCCCCCCGACGCGCATCGCCCCGGGCCGT
GGGTGTGGGCGGCATGCAGCATCTTTATGGCGCTTTACGAGCACAACatg
ccgggaggaaggacgctgGGCGATGTGCTGAAGGCGACGGGCCTGGAGCG
GATGGACGagttcctctcccacctgaccctcctctctcagcGGCTCCCGA
GACTCTCCGAGGAGCTGCAGGCCCTAGCGGGCGGATTgcggtag
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Synonyms
Publications