rna9484, rna9484 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9484
Unique Name	rna9484
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1342
Alignment location	KK037253.1:397307..398273 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100521g2.3639.mrna
Orig protein id	gnl\|cribi\|Naga_100521g2.3639
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:397307..398273 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100521g2	gene9205	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9484	rna9484-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21219.1	cds9453	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:397307..398273-
coding sequence from alignment at KK037253.1:397307..398273-

mRNA sequence

>rna9484 ID=rna9484|Name=rna9484|organism=Nannochloropsis gaditana|type=mRNA|length=1342bp
AAGTTCCTCCGATTCAAATTATTGCGCGAACGCGAGCATACCATGGCAAG
ATGCTCCCCACTGCGTGGCGTTCATGCCGCACACAAAGACAGGGTCAAGG
ACGCATGCGGCTGAAATTTCCGTTACTACAACTGTTGTTGCTGGGAGCAC
CTGGACTGTCGTCGTTGGTGCTTGGTATAGATAAGCATCCCATCAATCCT
CTGACTTCGTCCCTTTTTATTTCGAGTACGGTACACAATGGGAGGTCGAC
AGCGCGAGACCTCCGGCTCTTCAGCACTGCAACGCGATCTTCCCTCTCAG
TTGCATCCATCAAATTAAAAGTGTGTCAGTTAGCGGCTCTTACAGACAGG
GGTAAGCTTCAAGACCCCTTGGTCAGTGATGAAGGTCTCTACGCTGCTGA
AAGAGAGACAATGGTGTCCCTACTAGAGCTGTTGATTGCTAAGGGACGTG
AGAGGAAGCAAGCGATGAGCCCGGTGCTCTTGGAGGGAGAGTGGGAGCTG
GTGTACTCGACCAAGCAGCTCTTCCGTTCGTCCCCCTTCTTCCAGGCTAT
TGAGCGCGCCTACGCCGATCCCACAAAGTCTGAGCTCTTCTTCAAGCTGC
ACGAGCTCCAGACCTGCTCCTGGGGCGCTTCGCAGATCGGGCGCGTGGCA
CAGACCATCGATCTGCAGGCCCAGACCCTCCTCTCCTCCTTCGACACGGT
CCTCTTCCCCCTCACCACCATCCCCCTCATCGGCTGGTTCAAGCTCCTTC
CTACCTTCGGAGGCCGCGTCGATTCCCTCGCCGACGGTCTGACGGTCTCG
GAATCCTCGCAAGGGACCGCATTGCGTCTGGAGTACGCGGTAGCCAAGAC
TTCCTTCAAGAGGCTTGCGGGGCTCAAGACGATGCCCCTCCTGGGCGCCT
GGCTGGAAAACAAACAATTCCCGACCAAAGAGGCGTGGAACCTCCTCCCT
TGGAACTGGTCTGGGCCGGGCCCTCGGTGTCTGGTGGAGGTAGTCTATCT
GGACGAGGACTTTCGGATCGTCAGGGAGGGAGGGGGGGAGGACGGGGGGA
GGAGCGGGGCTACTTTGTTTACGCGCGGCCGGTAGGATTTGGTTGAAGAG
GGGAAGGAAAGGCAGGTGGGCCGACGGCGATGGGGAAAGACATCGAGGCA
TGCGACCGGGGCCTCGAAAGTGGCGCGAAAACCTTCGTGACGGGGAAAAA
GCCGAGGCATGAAGGAGCAGAGGGGGTCGCCGCTTGTGCGAGAGGCGCGA
GGGGCTCTCCGTGAGCGACATGCGTGGTTCAAGGCGGGGAGCTTTCAAAG
TTTCTGCCCGAGGGACGGCAACCAATGGCATTTGCAGCAATT

protein sequence of rna9484

>rna9484-protein ID=rna9484-protein|Name=rna9484|organism=Nannochloropsis gaditana|type=polypeptide|length=239bp
MVSTRRQSAKLESRKQREATYRNAALGSIAAVILGLLIFFLLPQRVTGWR
FSIPGHSRRLPQTSWRSPQRRQFPRSPQPRTTPHPPAVPPSLPRRSTAHA
LSPTKALTSLFPSSIILSGLFLFLSYVIPPDVALAAPLPGSLSPTLLVLS
QEGGREGGREGGREGDSVPSKTALEDLEKELGKAAFFGSEEVTGESGKEE
LAAGREPLSPPSSPSSSTDRLNALLNSKRKSVEPRTHGL

mRNA from alignment at KK037253.1:397307..398273-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9484 ID=rna9484|Name=rna9484|organism=Nannochloropsis gaditana|type=mRNA|length=967bp|location=Sequence derived from alignment at KK037253.1:397307..398273- (Nannochloropsis gaditana)
ATGGTGTCAACACGTCGGCAATCTGCGAAGCTGGAGTCCCGCAAGCAACG
AGAAGCCACCTACAGGAATGCCGCCTTGGGCTCCATAGCGGCCGTGATAT
TGGGCCTGCTTATATTCTTCCTACTGCCCCAGCGCGTGACGGGGTGGAGG
TAGGCCCAAGACGGGGAGGGTGGTGACGGAGGGAGGGGGCAAGCCAAGAC
CGCCCGCGCCCCAATCCCCCCCCCAACCCTCAGCTCCATCACGTGCTGAC
TTCTCAACAGGTTCTCCATCCCCGGACACTCGCGTCGCTTGCCTCAGACT
TCGTGGCGGAGCCCTCAAAGGCGCCAGTTTCCCCGCTCACCCCAGCCTCG
GACCACGCCTCACCCCCCCGCCGTCCCTCCCTCACTCCCTCGTCGCTCCA
CGGCCCATGCGCTCAGCCCTACGAAGGCCCTTACCTCCCTCTTTCCCAGC
AGCATCATTTTATCTGGCCTCTTTCTCTTCCTTTCTTATGTCATTCCCCC
GGACGTGGCCCTGGCAGCTCCTCTTCCCGGCTCCCTCTCTCCCACGCTCC
TGGTCCTCTCACAGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGACAGCGTCCCGTCGAAGACTGCCCTGGAGGATTTGGAGAAGGA
GCTGGGGAAGGCAGCCTTCTTCGGGAGTGAGGAGGTGACGGGAGAGTCCG
GGAAGGAGGAGCTAGCGGCGGGGTGAGTCCTGGGAGGGGAGAGGAAGGAG
GGGGAGGGTGAGGACGCGGGTCCACAAGGAGGAGGGTCTCGGGCGGGCAC
GGGGATGAAGGACAGGAGCTTGGGTGGTAACAGTGTTCCTCTATCCCTTC
TCCTTCAGGCGAGAGCCTCTCTCCCCCCCGTCCTCTCCCTCCTCGTCGAC
CGACCGCCTGAACGCGCTTCTGAACAGCAAACGCAAAAGTGTGGAGCCCC
GGACTCACGGGCTTTGA

Coding sequence (CDS) from alignment at KK037253.1:397307..398273-

>rna9484 ID=rna9484|Name=rna9484|organism=Nannochloropsis gaditana|type=CDS|length=2160bp|location=Sequence derived from alignment at KK037253.1:397307..398273- (Nannochloropsis gaditana)
GCGAGAGCCTCTCTCCCCCCCGTCCTCTCCCTCCTCGTCGACCGACCGCC
TGAACGCGCTTCTGAACAGCAAACGCAAAAGTGTGGAGCCCCGGACTCAC
GGGCTTTGAGTTCTCCATCCCCGGACACTCGCGTCGCTTGCCTCAGACTT
CGTGGCGGAGCCCTCAAAGGCGCCAGTTTCCCCGCTCACCCCAGCCTCGG
ACCACGCCTCACCCCCCCGCCGTCCCTCCCTCACTCCCTCGTCGCTCCAC
GGCCCATGCGCTCAGCCCTACGAAGGCCCTTACCTCCCTCTTTCCCAGCA
GCATCATTTTATCTGGCCTCTTTCTCTTCCTTTCTTATGTCATTCCCCCG
GACGTGGCCCTGGCAGCTCCTCTTCCCGGCTCCCTCTCTCCCACGCTCCT
GGTCCTCTCACAGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGACAGCGTCCCGTCGAAGACTGCCCTGGAGGATTTGGAGAAGGAG
CTGGGGAAGGCAGCCTTCTTCGGGAGTGAGGAGGTGACGGGAGAGTCCGG
GAAGGAGGAGCTAGCGGCGGGATGGTGTCAACACGTCGGCAATCTGCGAA
GCTGGAGTCCCGCAAGCAACGAGAAGCCACCTACAGGAATGCCGCCTTGG
GCTCCATAGCGGCCGTGATATTGGGCCTGCTTATATTCTTCCTACTGCCC
CAGCGCGTGACGGGGTGGAGGCGAGAGCCTCTCTCCCCCCCGTCCTCTCC
CTCCTCGTCGACCGACCGCCTGAACGCGCTTCTGAACAGCAAACGCAAAA
GTGTGGAGCCCCGGACTCACGGGCTTTGAGTTCTCCATCCCCGGACACTC
GCGTCGCTTGCCTCAGACTTCGTGGCGGAGCCCTCAAAGGCGCCAGTTTC
CCCGCTCACCCCAGCCTCGGACCACGCCTCACCCCCCCGCCGTCCCTCCC
TCACTCCCTCGTCGCTCCACGGCCCATGCGCTCAGCCCTACGAAGGCCCT
TACCTCCCTCTTTCCCAGCAGCATCATTTTATCTGGCCTCTTTCTCTTCC
TTTCTTATGTCATTCCCCCGGACGTGGCCCTGGCAGCTCCTCTTCCCGGC
TCCCTCTCTCCCACGCTCCTGGTCCTCTCACAGGAGGGAGGAAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGACAGCGTCCCGTCGAAGACTGCCC
TGGAGGATTTGGAGAAGGAGCTGGGGAAGGCAGCCTTCTTCGGGAGTGAG
GAGGTGACGGGAGAGTCCGGGAAGGAGGAGCTAGCGGCGGGATGGTGTCA
ACACGTCGGCAATCTGCGAAGCTGGAGTCCCGCAAGCAACGAGAAGCCAC
CTACAGGAATGCCGCCTTGGGCTCCATAGCGGCCGTGATATTGGGCCTGC
TTATATTCTTCCTACTGCCCCAGCGCGTGACGGGGTGGAGGCGAGAGCCT
CTCTCCCCCCCGTCCTCTCCCTCCTCGTCGACCGACCGCCTGAACGCGCT
TCTGAACAGCAAACGCAAAAGTGTGGAGCCCCGGACTCACGGGCTTTGAG
TTCTCCATCCCCGGACACTCGCGTCGCTTGCCTCAGACTTCGTGGCGGAG
CCCTCAAAGGCGCCAGTTTCCCCGCTCACCCCAGCCTCGGACCACGCCTC
ACCCCCCCGCCGTCCCTCCCTCACTCCCTCGTCGCTCCACGGCCCATGCG
CTCAGCCCTACGAAGGCCCTTACCTCCCTCTTTCCCAGCAGCATCATTTT
ATCTGGCCTCTTTCTCTTCCTTTCTTATGTCATTCCCCCGGACGTGGCCC
TGGCAGCTCCTCTTCCCGGCTCCCTCTCTCCCACGCTCCTGGTCCTCTCA
CAGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGACAG
CGTCCCGTCGAAGACTGCCCTGGAGGATTTGGAGAAGGAGCTGGGGAAGG
CAGCCTTCTTCGGGAGTGAGGAGGTGACGGGAGAGTCCGGGAAGGAGGAG
CTAGCGGCGGGATGGTGTCAACACGTCGGCAATCTGCGAAGCTGGAGTCC
CGCAAGCAACGAGAAGCCACCTACAGGAATGCCGCCTTGGGCTCCATAGC
GGCCGTGATATTGGGCCTGCTTATATTCTTCCTACTGCCCCAGCGCGTGA
CGGGGTGGAG

Synonyms

Publications