rna9475, rna9475 (mRNA) Nannochloropsis gaditana

Overview
Namerna9475
Unique Namerna9475
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length573
Alignment locationKK037253.1:373039..373469 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100589g3.927.mrna
Orig protein idgnl|cribi|Naga_100589g3.927
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:373039..373469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100589g3gene9196Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9475rna9475-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21228.1cds9444Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9475 ID=rna9475|Name=rna9475|organism=Nannochloropsis gaditana|type=mRNA|length=573bp
ATGCGTAAGCAGTTTGTCTATATCCAGGCAATCCCTGCAGGCTTGGAGTT
GGAAATGGCCTTGATGCGGGAGGAGCGACAAAGGGACAAAGAGCTCAAGG
AAAGGAATACATCCATCGTAGATCGCAGGGTATGGGAAAATCATGAGATT
GGTGTGGGGTATCAGCACAAAAACGTAATGCGTCAGGCAGTTGTACAGCA
CGAGAAAGTGCGAATAAAAGATATGACAAAAGAAAAAAGGAAGAAAAAAA
GCGCAGCTGAGCAGGATGCAGAAGCAAAAAAGGAAGAAGAAGTGAAAGCT
GCAGCCGAATTGGAGGCCTTTAAGCGGCTTCGGGCGCTTATATGGCGGGA
GTTGCGGGGAAGAAAGCGGCTGGACGCATTGGAGATGGAATACTCGATGA
GAGAACATGGGTGTGAGGAAACGCTACCTTCAGTAAGATCATCATCCGAC
CGATTCCTTGAAGAAGATGGCCAGCAAACAAAAAGTCACCGTTCTATATC
CCCTTCCAGCTTGTCATCTGCGCGAAAGGACAAGAGGAGCAAGAAGAAAA
AGAAGAAACAGAAGGGTAGATGA
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protein sequence of rna9475

>rna9475-protein ID=rna9475-protein|Name=rna9475|organism=Nannochloropsis gaditana|type=polypeptide|length=119bp
MGDRFDMTFALRVYRRRDRCEWDNMFLLVCTFFCLDYLFPLQRVPRPWRL
GSFFGQLVFLVLQVATTSTRNRRTDSSLWALHWNGNKSVQVYFKELGKTL
ASVRIAWFHSSGRFGEYRQ
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mRNA from alignment at KK037253.1:373039..373469+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9475 ID=rna9475|Name=rna9475|organism=Nannochloropsis gaditana|type=mRNA|length=431bp|location=Sequence derived from alignment at KK037253.1:373039..373469+ (Nannochloropsis gaditana)
ATGGGGGATAGGTTTGACATGACCTTTGCTCTCAGGGTATATAGACGGCG
CGACAGGTGTGAGTGGGACAACATGTTTTTGCTGGTGTGCACATTCTTCT
GTCTCGATTACCTCTTCCCGCTACAGCGGGTTCCCAGACCTTGGAGACTT
GGCAGGTAATGATATTTTATTTTTTCCCTGATCATAGCTAAGAGAGAAGT
CCTCTTTCGTCACTCGTAGAATGAAGCTTTTTTGGTCAGCTAGTCTTTCT
CGTACTTCAAGTGGCAACAACTAGTACAAGAAACAGGAGGACAGACTCGT
CTCTCTGGGCACTGCACTGGAATGGGAATAAAAGTGTTCAGGTGTATTTT
AAAGAATTGGGGAAAACGCTTGCGTCGGTACGCATAGCCTGGTTTCATTC
AAGTGGACGTTTCGGGGAGTATAGACAGTGA
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Coding sequence (CDS) from alignment at KK037253.1:373039..373469+

>rna9475 ID=rna9475|Name=rna9475|organism=Nannochloropsis gaditana|type=CDS|length=720bp|location=Sequence derived from alignment at KK037253.1:373039..373469+ (Nannochloropsis gaditana)
ATGGGGGATAGGTTTGACATGACCTTTGCTCTCAGGGTATATAGACGGCG
CGACAGGTGTGAGTGGGACAACATGTTTTTGCTGGTGTGCACATTCTTCT
GTCTCGATTACCTCTTCCCGCTACAGCGGGTTCCCAGACCTTGGAGACTT
GGCAGCTTTTTTGGTCAGCTAGTCTTTCTCGTACTTCAAGTGGCAACAAC
TAGTACAAGAAACAGGAGGACAGACTCGTCTCTCTGGGCACTGCACTGGA
ATGGGAATAAAAGTGTTCAGGTGTATTTTAAAGAATTGGGGAAAACGCTT
GCGTCGGTACGCATAGCCTGGTTTCATTCAAGTGGACGTTTCGGGGAGTA
TAGACAGTGAATGGGGGATAGGTTTGACATGACCTTTGCTCTCAGGGTAT
ATAGACGGCGCGACAGGTGTGAGTGGGACAACATGTTTTTGCTGGTGTGC
ACATTCTTCTGTCTCGATTACCTCTTCCCGCTACAGCGGGTTCCCAGACC
TTGGAGACTTGGCAGCTTTTTTGGTCAGCTAGTCTTTCTCGTACTTCAAG
TGGCAACAACTAGTACAAGAAACAGGAGGACAGACTCGTCTCTCTGGGCA
CTGCACTGGAATGGGAATAAAAGTGTTCAGGTGTATTTTAAAGAATTGGG
GAAAACGCTTGCGTCGGTACGCATAGCCTGGTTTCATTCAAGTGGACGTT
TCGGGGAGTATAGACAGTGA
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Synonyms
Publications