rna9472, rna9472 (mRNA) Nannochloropsis gaditana

Overview
Namerna9472
Unique Namerna9472
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length908
Alignment locationKK037253.1:365778..367271 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101077g2.4285.mrna
Orig protein idgnl|cribi|Naga_101077g2.4285
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:365778..367271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101077g2gene9193Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9472rna9472-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21232.1cds9441Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9472 ID=rna9472|Name=rna9472|organism=Nannochloropsis gaditana|type=mRNA|length=908bp
TTTGTCGGGGCGGTGAAAGCTATGATTTTCTTTGCTTTGGAGTACAATGC
GCTGTGCTGAAAGCCACGGGGATCATGTGGCTTCCTCCGATCGGACAATG
GAAAAGGAAAGAATCTTGGGAGGACCGCCTGCATGATGGGAGGGGTTGGT
TGGATAGCAGATGCGTATCCATCACCTTTCATACGTTCACAGGTCCAAAC
ATCGGCATGCAGGCCCTCTCACCAGCCATGAAATTAGCGCCGACCTCGAA
CGCACCTCCCATCTAGAGTTTGGCGTTGATTGGGGAAAGCAGTAGGATGA
CTCCAGCGACTCCTAAACCTGTGGGGCCGACAGGTACCTCAGCGGCCCAT
GCCCACACCCTGGCCGGGGAGGATAGCGACCACCATACAAAGGCCATTGA
AATGGGTGACCTCCCTTCCGAAAATGCGGTCTACGACGCCTGGGCTCATG
AAGAGGACGGGGAAGAACGCACCGCCATCCCTCTCGCCGTGGCCTCTCCC
TTCCCGGGCAAGCATTCGCGAGCCACCCTGATCAACCCGTGGAGCCGCAT
CAATTGGGGCATTACTGTCGGAACCTTTGTGTACAATCTAACTAGCACCT
TTTTGGTCATCCCCATGGGGTTCTACGTGGTGCAAGACCTGATGATGGAC
GGAAGGGCCCTGAACGTTGTGCAAAGCATGCTGCTCCTCCCTCAGGCCCT
CCAGCTCCCCTTGGGCCTTCTTTCAGATTGTGTGCCCATCGCTCATCAGC
GCCGGAAGCCGTACATCATCATTGGCTGGCTGATCAATCTGGCCGCGATG
GCCGCCCTCGCCGCCGTGGACACGCCCAGCATCAGCATTCTCTTGCCCCT
GGTGTTCCTCTCCACCTGCGGAGGGCAGCTAATCGACATCGCCGGGAAGG
CTCTTGTT
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protein sequence of rna9472

>rna9472-protein ID=rna9472-protein|Name=rna9472|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
RVSLGWESFPGGGGMSTNFWVSPADKTVVVAMVQIIPYTQDLKFAARDWT
YRSIDAFKRRKEDGFAVPLALPEEKDARSAATIDAETGAAVLESPKKRAL
RHG
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mRNA from alignment at KK037253.1:365778..367271-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9472 ID=rna9472|Name=rna9472|organism=Nannochloropsis gaditana|type=mRNA|length=1494bp|location=Sequence derived from alignment at KK037253.1:365778..367271- (Nannochloropsis gaditana)
AGGGTGTCCCTCGGGTGGGAGAGTTTTCCTGGGGGGGGGGGCATGAGCAC
GAATTTTTGGGTCTCTCCCGCCGACAAGACGGTGGTGGTGGCCATGGTGC
AGATCATACCCTACACGCAAGGTAGGCAGGAGGGAGGGGGAGAGGGAGGG
AGGGAGGGGGAGAGGGAGGGAGGGAGGTGGTGTTAATTTTCGCTTTTGTT
TCCATTTTTTTCTTCATCCCTCGTGGATTCGCTCCTGGAGCGTTGGAGCG
TCGTATTGAACCAGTGGTGTTAAAGACAAGCCGCACATCACCCACATGGA
TCGGCAAAATTTCTCTCCCTCCTTTTGACTTCCTTCTATCTTCTTCCTCA
TTCTTTGTATTTCCCCTCCCCTACTGGTAGACTTGAAATTTGCGGCCCGC
GACTGGACCTATCGTTCGATCGACGCCTTCAAACGGAGAAAGGAGGTGAG
GAAAGAAAGGGAGGGGGAGGGAAGGAGGGAAAGACCGACGGCCTATCACG
CAGGACATCTCTGAGCCTCATTTTTCATGACCCGTCTCCCTTTTCCACGC
CTGCCAGGACGGTTTCGCCGTCCCTCTCGCCCTGCCCGAGGAGAAGGACG
CCCGATCGGTAAGGGAGATTTGAGGGAGAAGAAAAGTCTCTGAAGAAACG
GGGCATAAAGGCGAAGGAAGCCACTACTTATTGCTGTGTCTCTGTGTCGG
TGGATCTATCGGCATCGTTAGGGGCTCTGCGCCACCTTGCCCCCCTTCCA
CTGCGATCACCCCTCGAGTTGCCTTCCCGCTCATCTCCCACATTCGCATG
CAATGCCCCGCATTTTCATGGTGTATTCCTACGCTTTCCTCGTTTTCCTC
CAGGCTGCGACCATTGACGCCGAGACGGGGGCAGCTGTGCTGGAAAGCCC
GAAGAAACGGGCCTTGCGCCATGGCTAGCATGTCCAAGAACATGGTTGGG
GGAGTCAGGGTGAAAGATGAAGCGAAAAATGTCTGTGTTATAGAAGTTAT
CGGTCTGGGATGTTGTGATGTGTTCGGGGTGGACAGGTCCTTTGCGAGTC
GGACGAGAATCTTCGTGAAAATGTAGGGTCTGCTGCTTGGGACGACGAAT
AATCCTACGACTTTTGTTGTAAAATTCAGCATTCTGGACGTTGTTGCGTC
AAAAGGAAAGATAAGAAATCGTTCGGAGCAAGGAGCGAGCAGGGCACCCA
AATATCGGAAATGCTTGGCATTTCTTGTCGTTGGATGTCGGTTAGTTGGG
GCCATGGGAGACAGGCCCTCTCAACACGTTTGGTGTTATTTTGATTCCAC
TGATTTGTGTTTTCAAGAGAAAAAAGATAAACATAGAATCCCATTATGCT
CTAGACAAAAAAAAAACACGTGTAACTTTCTTTCATAAGGTATTTTTGGG
AAGAAGAAAACTCATAGAGGGGGAAACTAGAACGATATCTCGGCATTTTC
TAGCGCACGAAAGCAAAAGGAAAACCTTCCAGAATATTTTGACT
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Coding sequence (CDS) from alignment at KK037253.1:365778..367271-

>rna9472 ID=rna9472|Name=rna9472|organism=Nannochloropsis gaditana|type=CDS|length=1248bp|location=Sequence derived from alignment at KK037253.1:365778..367271- (Nannochloropsis gaditana)
GCTGCGACCATTGACGCCGAGACGGGGGCAGCTGTGCTGGAAAGCCCGAA
GAAACGGGCCTTGCGCCATGGCTAGGACGGTTTCGCCGTCCCTCTCGCCC
TGCCCGAGGAGAAGGACGCCCGATCGACTTGAAATTTGCGGCCCGCGACT
GGACCTATCGTTCGATCGACGCCTTCAAACGGAGAAAGGAGAGGGTGTCC
CTCGGGTGGGAGAGTTTTCCTGGGGGGGGGGGCATGAGCACGAATTTTTG
GGTCTCTCCCGCCGACAAGACGGTGGTGGTGGCCATGGTGCAGATCATAC
CCTACACGCAAGGCTGCGACCATTGACGCCGAGACGGGGGCAGCTGTGCT
GGAAAGCCCGAAGAAACGGGCCTTGCGCCATGGCTAGGACGGTTTCGCCG
TCCCTCTCGCCCTGCCCGAGGAGAAGGACGCCCGATCGACTTGAAATTTG
CGGCCCGCGACTGGACCTATCGTTCGATCGACGCCTTCAAACGGAGAAAG
GAGAGGGTGTCCCTCGGGTGGGAGAGTTTTCCTGGGGGGGGGGGCATGAG
CACGAATTTTTGGGTCTCTCCCGCCGACAAGACGGTGGTGGTGGCCATGG
TGCAGATCATACCCTACACGCAAGGCTGCGACCATTGACGCCGAGACGGG
GGCAGCTGTGCTGGAAAGCCCGAAGAAACGGGCCTTGCGCCATGGCTAGG
ACGGTTTCGCCGTCCCTCTCGCCCTGCCCGAGGAGAAGGACGCCCGATCG
ACTTGAAATTTGCGGCCCGCGACTGGACCTATCGTTCGATCGACGCCTTC
AAACGGAGAAAGGAGAGGGTGTCCCTCGGGTGGGAGAGTTTTCCTGGGGG
GGGGGGCATGAGCACGAATTTTTGGGTCTCTCCCGCCGACAAGACGGTGG
TGGTGGCCATGGTGCAGATCATACCCTACACGCAAGGCTGCGACCATTGA
CGCCGAGACGGGGGCAGCTGTGCTGGAAAGCCCGAAGAAACGGGCCTTGC
GCCATGGCTAGGACGGTTTCGCCGTCCCTCTCGCCCTGCCCGAGGAGAAG
GACGCCCGATCGACTTGAAATTTGCGGCCCGCGACTGGACCTATCGTTCG
ATCGACGCCTTCAAACGGAGAAAGGAGAGGGTGTCCCTCGGGTGGGAGAG
TTTTCCTGGGGGGGGGGGCATGAGCACGAATTTTTGGGTCTCTCCCGCCG
ACAAGACGGTGGTGGTGGCCATGGTGCAGATCATACCCTACACGCAAG
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Synonyms
Publications