rna9469, rna9469 (mRNA) Nannochloropsis gaditana

Overview
Namerna9469
Unique Namerna9469
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length920
Alignment locationKK037253.1:360099..360529 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103678g1.2640.mrna
Orig protein idgnl|cribi|Naga_103678g1.2640
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:360099..360529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103678g1gene9190Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9469rna9469-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21235.1cds9438Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9469 ID=rna9469|Name=rna9469|organism=Nannochloropsis gaditana|type=mRNA|length=920bp
TGCATGGGAACCTCAGTTGAATCATTTTTTAACGCGACGCTGATATGTAA
CTTGCTGCGTTGGGCAGGATTTTTTAAACCCCAATTTTTCCTTTCAACAC
CGACGTCTCTCATTTTGTACGTTAGACAGAGGGATTGTGTGGAAGCTCCT
TGAGCGTACCATGCCTGAATTGATCGGGCCGGACGAAAAGCTTCCCTTCA
TGGAAGGCAGAGGGGATGTAGAAGAAAAAAAGGGGAAGATGACAAGGAGA
GTGGAGGAGGCCGAATCCTTGATAGGACCTCTTGGTGAAGGCAGACATCG
AACCCTCTCCGCGGGTCGCCCGTCGCGCCCATCGGCTCCAGCTCCTCCTG
CGCAATTGCCGGGGATATACCATCCGCTACACATGGAACCGGCGGGGCTC
TCACGGAAAAGTCAATTGCTACGGCAAGTATGGCCGTCGCTTCGCCAATA
CCTCTGCAGGCGACCGTCCCTGTCCCGCCTGGTGGTCTATTCCCTCATTA
CCACCGCGACTCTCATAGGGGGACTGCTGCTATCTCCATACTCCGCTTCC
TTCCGATCCATGCTGCCGTCCAACCCTTTTTTCCCTCCTTCTTCTGGGCC
CTCAGAGTCCTCTGGTGACCTGCCCCGTGTCTCCCTCTGGCCCCGCGGCC
ATGTTCCCTTGGCCTTGGGCGAAGAGCCGCCAGACACACCGTCCCTGATC
CCATTCTTCCCCGAGCCGGAGGACTGGCGCGGTACCTCGATGGTGGTGAT
GCCGGGGGGTGGGTACAAGTTCCTCTCATTGTTCAAGGAGGGGGTCCGGG
TGGCCAAGTGGCTCTCGGAAGAGGAGGGCATTGCGGCCTTTGTGCTCCAG
TACCGGCTGGGTCCCGATGGATACCACCACCCGGTTCAGCTTCTGGACGG
TCGTCGGAGCCTGAAAAAAG
back to top

protein sequence of rna9469

>rna9469-protein ID=rna9469-protein|Name=rna9469|organism=Nannochloropsis gaditana|type=polypeptide|length=107bp
GPWGDPCHSCRTTGPVSHLVSASLLSDRPARSLELTLTFLSVSRPGACSA
RPDFGVLLYPVISMDRKVTHHGSRVGREGGREGGREGGREGGREEVLVSS
LAERIGS
back to top

mRNA from alignment at KK037253.1:360099..360529+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9469 ID=rna9469|Name=rna9469|organism=Nannochloropsis gaditana|type=mRNA|length=431bp|location=Sequence derived from alignment at KK037253.1:360099..360529+ (Nannochloropsis gaditana)
GGGCCTTGGGGTGATCCTTGTCACAGTTGTCGGACCACGGGTCCGGTCTC
CCACTTGGTTTCCGCGTCTCTCTTGTCCGATCGCCCCGCTCGATCTCTTG
AACTTACCTTAACATTTCTCTCCGTGTCGCGCCCGGGGGCTTGCAGCGCT
CGACCGGACTTCGGGGTGCTTTTGTACCCTGTCATCTCCATGGACAGGAA
GGTTACTCACCACGGAAGCAGGGtagggcgagagggagggcgggagggag
ggagggagggagggagggagggagggagggaggaggtgctggtgaGCTCT
CTGGCTGAACGCATCGGGTCATAGTCCACCCCTGCtttgtctccctttct
cttcctccacgccttctTTGGGGGCAGCGTGTGTGtaccttttttctcct
tctccgctctCGTTCTCCCTTTGCTTTTCCC
back to top

Coding sequence (CDS) from alignment at KK037253.1:360099..360529+

>rna9469 ID=rna9469|Name=rna9469|organism=Nannochloropsis gaditana|type=CDS|length=324bp|location=Sequence derived from alignment at KK037253.1:360099..360529+ (Nannochloropsis gaditana)
GGGCCTTGGGGTGATCCTTGTCACAGTTGTCGGACCACGGGTCCGGTCTC
CCACTTGGTTTCCGCGTCTCTCTTGTCCGATCGCCCCGCTCGATCTCTTG
AACTTACCTTAACATTTCTCTCCGTGTCGCGCCCGGGGGCTTGCAGCGCT
CGACCGGACTTCGGGGTGCTTTTGTACCCTGTCATCTCCATGGACAGGAA
GGTTACTCACCACGGAAGCAGGGtagggcgagagggagggcgggagggag
ggagggagggagggagggagggagggagggaggaggtgctggtgaGCTCT
CTGGCTGAACGCATCGGGTCATAG
back to top
Synonyms
Publications