rna9465, rna9465 (mRNA) Nannochloropsis gaditana

Overview
Namerna9465
Unique Namerna9465
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length432
Alignment locationKK037253.1:353528..354515 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101615g1.1318.mrna
Orig protein idgnl|cribi|Naga_101615g1.1318
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:353528..354515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101615g1gene9186Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9465rna9465-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21239.1cds9434Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9465 ID=rna9465|Name=rna9465|organism=Nannochloropsis gaditana|type=mRNA|length=432bp
ATGTCCACAGGGACAATCTGCTGCTTTTTGCCCTTGTATTACTTTCTCTT
GCACTTCGCCAGTCGTTCGAGTGCCTTTGTTCCCCCTGAGCGCGTGTGGA
GTTGTAGCACTTTTCCGCCACCCCGGCGCGTGCGGGGTCTGGAACGACGG
CATTCGACACTACCAAAAGTCAATAGACAGAGGGCGTCAGACATGGGCGA
TGTGACCGAGGGACCTTGGAAGGAAAATGATTCCACACATGGGGCCGTGG
AATTTTACAGTGGCATTGGTGGCTGGAGTGAGGCTTTAGAAGGAGCATTG
AGAAGGCTGGGGAGGGAGGGGGCTTTCCAGGTGAGGGCCGCGTATGAGAT
CAATCTGGTCGCCAACCAGGTCTATGCTGCTCAAGGTAGGAGGCCGCATG
ATTTGCGAGACGACAAGTTCATGGTAGCGTAG
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protein sequence of rna9465

>rna9465-protein ID=rna9465-protein|Name=rna9465|organism=Nannochloropsis gaditana|type=polypeptide|length=145bp
MSSEINDGEPAKDGLSEREGQEGKLERGGDGGGAAETQTNSPPQPANMKT
KEAEMLIKQAFATQNADLSREMHKARASISSPSSAVAGAPLPLNGMGLST
SGFGGSMPAEGGHIWRETDISAYLITGAVGGADEGMQREGGREGG
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mRNA from alignment at KK037253.1:353528..354515+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9465 ID=rna9465|Name=rna9465|organism=Nannochloropsis gaditana|type=mRNA|length=988bp|location=Sequence derived from alignment at KK037253.1:353528..354515+ (Nannochloropsis gaditana)
CCCAAGTCCTCACAGGGTCTCAGTATACAAGAAAACGGGCACTGAGGGCC
AGGTTGCTGTAATGTCTTCCGAAATTAATGACGGGGAGCCCGCCAAGGAT
GGTCTatcggaaagggaggggcaggagggcaagctggaaagaggggggga
cggagggggggctgCCGAGACGCAAACAAACTCACCACCACAGCCAGCAA
ACATGAAAACTAAGGAGGCAGAAATGCTTATTAAGCAGGCAAGATAGAGG
TTGTCGAGTCTGTGTCAAGGGAAGGCTTGTGTCAGTGCCCAGGACTGTCT
AgattcctccgcctgcaagcTTGCTGTGAAAAGCAAAGCAGTGCATAATG
TAGTCGATTTGGGCATATACGGGGCACATGAGATAAATTATATTTTAGGG
TACCCGTGTTTGTCGTTTGAGCTCATCCTCgatgctttcctttccccgac
tccacctcccgctttcccccctcccccccccttcccttcccctcttcacA
GGCATTCGCCACCCAGAACGCGGACCTGTCCAGGGAGATGCACAAGGCCA
GAGCGTCCATAAGTTCACCGTCgaggtaaggaaggaggaaaagcggggcg
gaggaagagagggaagaagggttgGAAGTCACGGCGCCCTGGCAGTGACG
GTGAATCGGACAAGCGCTGATGAAGACGAAAGCAGAGAATGAGCGAATGC
ATGCGTTCCTGGCCCTCCTTAAACCCTTCGGGCACGACCAACGCCtcgac
cctcctctcctttcctcccctccttttccctcccctcccctccttcctgc
cagTGCGGTGGCCGgagctcccctccctctcaacGGCATGGGGCTCTCCA
CCTCGGGCTTTGGAGGCTCGATGCCCGCCGAGGGGGGACACATATGGCGA
GAGACCGACATTTCTGCCTACCTGATcacgggggcggtgggaggtgCGGA
CGAGGGgatgcagagggagggagggagggagggaggga
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Coding sequence (CDS) from alignment at KK037253.1:353528..354515+

>rna9465 ID=rna9465|Name=rna9465|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at KK037253.1:353528..354515+ (Nannochloropsis gaditana)
ATGTCTTCCGAAATTAATGACGGGGAGCCCGCCAAGGATGGTCTatcgga
aagggaggggcaggagggcaagctggaaagagggggggacggaggggggg
ctgCCGAGACGCAAACAAACTCACCACCACAGCCAGCAAACATGAAAACT
AAGGAGGCAGAAATGCTTATTAAGCAGGCATTCGCCACCCAGAACGCGGA
CCTGTCCAGGGAGATGCACAAGGCCAGAGCGTCCATAAGTTCACCGTCga
gTGCGGTGGCCGgagctcccctccctctcaacGGCATGGGGCTCTCCACC
TCGGGCTTTGGAGGCTCGATGCCCGCCGAGGGGGGACACATATGGCGAGA
GACCGACATTTCTGCCTACCTGATcacgggggcggtgggaggtgCGGACG
AGGGgatgcagagggagggagggagggagggagggaATGTCTTCCGAAAT
TAATGACGGGGAGCCCGCCAAGGATGGTCTatcggaaagggaggggcagg
agggcaagctggaaagagggggggacggagggggggctgCCGAGACGCAA
ACAAACTCACCACCACAGCCAGCAAACATGAAAACTAAGGAGGCAGAAAT
GCTTATTAAGCAGGCATTCGCCACCCAGAACGCGGACCTGTCCAGGGAGA
TGCACAAGGCCAGAGCGTCCATAAGTTCACCGTCgagTGCGGTGGCCGga
gctcccctccctctcaacGGCATGGGGCTCTCCACCTCGGGCTTTGGAGG
CTCGATGCCCGCCGAGGGGGGACACATATGGCGAGAGACCGACATTTCTG
CCTACCTGATcacgggggcggtgggaggtgCGGACGAGGGgatgcagagg
gagggagggagggagggagggaATGTCTTCCGAAATTAATGACGGGGAGC
CCGCCAAGGATGGTCTatcggaaagggaggggcaggagggcaagctggaa
agagggggggacggagggggggctgCCGAGACGCAAACAAACTCACCACC
ACAGCCAGCAAACATGAAAACTAAGGAGGCAGAAATGCTTATTAAGCAGG
CATTCGCCACCCAGAACGCGGACCTGTCCAGGGAGATGCACAAGGCCAGA
GCGTCCATAAGTTCACCGTCgagTGCGGTGGCCGgagctcccctccctct
caacGGCATGGGGCTCTCCACCTCGGGCTTTGGAGGCTCGATGCCCGCCG
AGGGGGGACACATATGGCGAGAGACCGACATTTCTGCCTACCTGATcacg
ggggcggtgggaggtgCGGACGAGGGgatgcagagggagggagggaggga
gggaggga
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Synonyms
Publications