rna9461, rna9461 (mRNA) Nannochloropsis gaditana

Overview
Namerna9461
Unique Namerna9461
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length513
Alignment locationKK037253.1:344632..345559 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100896g1.456.mrna
Orig protein idgnl|cribi|Naga_100896g1.456
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:344632..345559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100896g1gene9182Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9461rna9461-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21242.1cds9430Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9461 ID=rna9461|Name=rna9461|organism=Nannochloropsis gaditana|type=mRNA|length=513bp
ATGTGTACCTCCCCCTATCCGGCCACCCACGTCCCTCCCTATCCTTGGAA
GGGAGGGGGTAACAACCGACAGGGGAGGGGGAGCCCATGTCCTGTGCTCG
GTTTCCCCAGGGGCTTCTCGCCTTCTCTACCGTGCCTCTCTCCCCCTCCC
TCCCCTCTCCCTGTCTTTCCGTCTTCTCTTTCCTTTCTTGTGCGGTGTCG
GGCGTGCATGCGTGTTGTCCCCGGGGGAGGGGCAATGGCCGGGATGGACG
GCGGGAAGGGCGTCGGAGACAAGGGAGGGGACCTGCCTAGGAAAGGCGGG
CCCAGGAGGGAGAGGAAGCGAGGGAAGCGTGCTGTGTTCTTTCATGCGTT
CGAATCCTTGCCTGAGAAAAGAGGCGTGAGCCCTCTGTGTGCAAACGGTT
CCAGAATTCCCCCGTGGGGGGACTCGAACCTCGTTCCTCCCGTTGTCGTC
CCGGGCGTTCCCCCCTTTTCGGCCAGGGCGCGGCCCATGTCTCTCCTATC
AGGAGGGGAATGA
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protein sequence of rna9461

>rna9461-protein ID=rna9461-protein|Name=rna9461|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
MEEGVRSGWREAEKAWLDFVHVDRCSLRGWEGRAVMEGRRGRGRGVEGGE
AAWKGCVDIYSPKEMNGTRPKIRCPLTRRLCSQKTYNEVTEGQAGGAGVS
EPSLWHRKTRPSRLVSLAVPAANYMFTLCINHIIFFL
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mRNA from alignment at KK037253.1:344632..345559+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9461 ID=rna9461|Name=rna9461|organism=Nannochloropsis gaditana|type=mRNA|length=928bp|location=Sequence derived from alignment at KK037253.1:344632..345559+ (Nannochloropsis gaditana)
TGGTGGCGCAAAAATTTTTGGAGTCCCGCTCCGCCGCTGGCGTGGTTTTG
TgcgatcccctccctcccaatcccGCTGCCTGTATTCGGAGGTACCAAGA
GCAGGTCcaaacgagggagggagggagggagggagggagggaggaaggga
aggagggcaatcCCCGTCTACCCTGGCAAGCGTGGGAAGACGCCGAGCTG
CCAACGGCGGCGGTGAATCTGGAgtcgggggcggtggagtggctgctgct
cctgagTGGCCCGCCGGCAGACAAGAGgcaaggagcagggaggggtgggg
aaggaagggaaagaggggggttGCAGGGACGGGGAAGCCATCCCTTTTTG
ACagaggaggatctggaggcCTTGGTGCGGGTGCACgggatcgaggagga
aggggtggtggtcgtgggggagggcgggaaggagggagggggcatgCCTG
CGGCCTGGACGGAGGTCATGGCGCCGGTGGTGCATGCTTGGTACGACGCG
CGCTTTtgaggggcatggaggagggtgtcCGCAGTGGGTGGAGAGAGGCT
GAGAAGGCCTGGTTAGACTTTGTCCATGTTGATCGTTGTAGTCtcagggg
atgggaaggaagggcggtaatggagggaaggagagggaggggacgagggg
ttGAGGGTGGTGAAGCCGCTTGGAAAGGGTGTGTAGATATATATAGTCCA
AAAGAAATGAATGGCACGCGCCCGAAGATACGATGCCCTCTCACAAGGAG
GTTGTGCAGCCAAAAGACTTACAACGAGGTGACGGAAGGCCAAGCTGGTG
GCGCGGGGGTCTCTGAACCCTCCCTCTGGCACCGGAAGACTCGCCCCTCC
CGGCTCGTTTCCCTCGCCGTGCCCGCTGCAAACTACATGTTTACATTATG
TATAAATCACatcattttctttctttaA
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Coding sequence (CDS) from alignment at KK037253.1:344632..345559+

>rna9461 ID=rna9461|Name=rna9461|organism=Nannochloropsis gaditana|type=CDS|length=414bp|location=Sequence derived from alignment at KK037253.1:344632..345559+ (Nannochloropsis gaditana)
atggaggagggtgtcCGCAGTGGGTGGAGAGAGGCTGAGAAGGCCTGGTT
AGACTTTGTCCATGTTGATCGTTGTAGTCtcaggggatgggaaggaaggg
cggtaatggagggaaggagagggaggggacgaggggttGAGGGTGGTGAA
GCCGCTTGGAAAGGGTGTGTAGATATATATAGTCCAAAAGAAATGAATGG
CACGCGCCCGAAGATACGATGCCCTCTCACAAGGAGGTTGTGCAGCCAAA
AGACTTACAACGAGGTGACGGAAGGCCAAGCTGGTGGCGCGGGGGTCTCT
GAACCCTCCCTCTGGCACCGGAAGACTCGCCCCTCCCGGCTCGTTTCCCT
CGCCGTGCCCGCTGCAAACTACATGTTTACATTATGTATAAATCACatca
ttttctttctttaA
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Synonyms
Publications