rna9443, rna9443 (mRNA) Nannochloropsis gaditana

Overview
Namerna9443
Unique Namerna9443
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1200
Alignment locationKK037253.1:304875..305963 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101302g1.7437.mrna
Orig protein idgnl|cribi|Naga_101302g1.7437
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:304875..305963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101302g1gene9164Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9443rna9443-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21260.1cds9413Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9443 ID=rna9443|Name=rna9443|organism=Nannochloropsis gaditana|type=mRNA|length=1200bp
AGAACTATGCCTTCTCCCACTGCGCGCTGTGACCGTGCATCTCTTAACGT
CCCTTGCACGAGTACAAAGTCGTCATAAGCCGTACAAATTTCATGGATTA
AGAAGGGAGGCAATTTAATTATTGTTTTTTTCATCCACCCCCGCCCCCGA
GACCTGTTGTCATGCTGCGGTGACAAGCAAAGGATCAAAATCTAACTTCT
TTCTCAGAACACTTGGCACGCCTCACCGCACCAGCCATGTCTCTTACATG
CTGCCTCTGCGGGTTAACTACAACACGTGCATCCCCTGTTGACCGAAGTA
AACCGGTGGGAACGCCTTTCTTTGCTTCGATGCTGCCGAGTGACCTTTCG
TTTACTCTATCAGGCCCCGTTTCCCACAACGGATGAACTTGTGCTAAAAA
TGACAGAGAAAACAAAAGTACCGGCTAAACAGGACGCATTATGTCCGTCC
TGCACACCAATTATGTCCATGTTATTTGTAAACTTCCTGGCCTGATCTGT
ACGCACCCCTCCGTCTTCCTCTGCTTTTTTCTCCACAATGCCAGCAATGG
CTAAGCATACAGGCAGCGGCCCGGCCTTCCCCGCAGCAACGGATGCGACG
ACTGTGTCGTACCAACAAGCCAAGGAGCACACGCCTTTGGTCATCGAAGC
AGTGCCACTTGCGGACGATAGAACGCCCATTATCGGGAGTGCGCTTGAAA
TGGAGCTGGAGAGAGTGTTGTCAAATCGTCCACGCCGCATTTTTCTGGCC
TCGCTGGCTGCTCTAGCCCTTCTTATCCTGGGATCACTATTCTTGGTGCT
AGCCTCAAGCCGCGGCGGCCACGAGCAAGTCCCACCCGTGACCTGAACCA
CAGACAACATCGGGCCTGCGAGGCTTCCTTGACAAGGATATACAAAGGAT
CCGAGGGATGCGTGCAGACAAGGGTGTGTGGGAGGGAAGAGAAGGGAGTT
AGCCGATCCATGCCCCTTTAAGGCTGTGTCGGTAATAGTCGTGATAGCGG
AACGGCGATGGCCGCTTGAGGTACGGATCATGAGGTGGAGGGATGGAATG
TAGAGAAAGCAAAGCAAAGGTGTACAAAGCAGCTCTGACGAAGGCATAAA
GGGAGGCCGGCAGGTCCGTGTACGCCGGAAAGGGTGGGGTAACAGGCATA
AGCCTCCCCGAATAAAACCCACAAAGAAGTAATTCACGTGCAAGACCCGA
back to top

protein sequence of rna9443

>rna9443-protein ID=rna9443-protein|Name=rna9443|organism=Nannochloropsis gaditana|type=polypeptide|length=209bp
MKPPRSSLYRFVFHVCLGLSLVPDCPAFLVSPPSFPLSFPSSSTALPAKK
PASKKGGATGPSTVKGFGSSKPSPSSSSSFPGLPHTLLRDQGHLSLIDWV
QQRGGEINHLGVASVQPQNIRGIVTLKPFKKGETIISIPYALAIDVTPTA
LSPSAAAPKLADPVPAALELLKQLDDPAFAAAYAPYLAMVPSPTAKEGEG
GYGMTTGED
back to top

mRNA from alignment at KK037253.1:304875..305963+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9443 ID=rna9443|Name=rna9443|organism=Nannochloropsis gaditana|type=mRNA|length=1089bp|location=Sequence derived from alignment at KK037253.1:304875..305963+ (Nannochloropsis gaditana)
ATAATCCACGGCACAAGAATGGAGAAATTCGACCCTGGCAATCCGTCACT
CATGATAAATCTTCTGCCAAGGACTTGGGAATTGCATGTCCACGAAAGGC
TTCTCAATTTCATGTCAAAATACCCCAGGGCGAGGGGTTATCAGGCAAAA
GTCTGCCATGCAAGGATGTTTCTCCCAAAAATCCCAGGGCAAGGGCGCAA
ATAAAGTGTAAAAGGCATTACTCTACAATGCCACGCGCCCTCCAAGCTGT
TATTCTAGACGCGCACACATATGTGCGTTCCTGACCGTGGTCGTGGATTC
CGTATGGTCGTCTTCAGCCCGGGTAATCAATAAAGAGTACTTAGTTGAaa
gcaacctcctcctccctctgaaCCACTTCCCATCCCCTAACCATAAGGAC
TGCTCACCGAGAGAAATCTTCCCTCTCCGATCGCCCCTATTCAAAGCAGG
GACTGATGAAGCCACCACGGTCATCTTTGTACCGCTTTGTTTTCCACGTC
TGCCTGGGTCTTTCCCTCGTCCCAGATTGCCCTGCTTTCCTTgtatcccc
tccctccttccctctctccttcccttcttcctccaccgccctgcCCGCCA
AGAAACCCGCCTCCAAAAAAGGTGGCGCCACAGGCCCCAGCACTGTCAAA
GGCTTTGGGAGCTCGAaaccttctccctcgtcgtcctcgtccttccccgg
ccttccccacaccctcctccgagaccaGGGGCATTTAAGCCTCATAGATT
GGGTGCaacaacgaggaggagagatcAATCACCTGGGGGTTGCCTCTGTT
CAGCCCCAGAACATCCGAGGCATCGTTACCCTCAAACCCTTCAAAAAAGG
GGAGACAATCATCAGCATCCCGTACGCCCTCGCCATCGACGTCACCCCTa
cggccctctccccctccgccgcggcTCCCAAGCTGGCAGACCCAGTGCCC
GCCGCCCTGGAGCTCTTGAAACAACTGGATGATCCGGCATTCGCCGCAGC
ATATGCCCCGTACTTGGCCATGGTACCTTCCCCTAccgccaaggagggcg
aaggaggataCGGGATGACCACAGGTGAggactgaggga
back to top

Coding sequence (CDS) from alignment at KK037253.1:304875..305963+

>rna9443 ID=rna9443|Name=rna9443|organism=Nannochloropsis gaditana|type=CDS|length=630bp|location=Sequence derived from alignment at KK037253.1:304875..305963+ (Nannochloropsis gaditana)
ATGAAGCCACCACGGTCATCTTTGTACCGCTTTGTTTTCCACGTCTGCCT
GGGTCTTTCCCTCGTCCCAGATTGCCCTGCTTTCCTTgtatcccctccct
ccttccctctctccttcccttcttcctccaccgccctgcCCGCCAAGAAA
CCCGCCTCCAAAAAAGGTGGCGCCACAGGCCCCAGCACTGTCAAAGGCTT
TGGGAGCTCGAaaccttctccctcgtcgtcctcgtccttccccggccttc
cccacaccctcctccgagaccaGGGGCATTTAAGCCTCATAGATTGGGTG
CaacaacgaggaggagagatcAATCACCTGGGGGTTGCCTCTGTTCAGCC
CCAGAACATCCGAGGCATCGTTACCCTCAAACCCTTCAAAAAAGGGGAGA
CAATCATCAGCATCCCGTACGCCCTCGCCATCGACGTCACCCCTacggcc
ctctccccctccgccgcggcTCCCAAGCTGGCAGACCCAGTGCCCGCCGC
CCTGGAGCTCTTGAAACAACTGGATGATCCGGCATTCGCCGCAGCATATG
CCCCGTACTTGGCCATGGTACCTTCCCCTAccgccaaggagggcgaagga
ggataCGGGATGACCACAGGTGAggactga
back to top
Synonyms
Publications