rna9442, rna9442 (mRNA) Nannochloropsis gaditana

Overview
Namerna9442
Unique Namerna9442
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1260
Alignment locationKK037253.1:299822..301111 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100750g1.5537.mrna
Orig protein idgnl|cribi|Naga_100750g1.5537
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:299822..301111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100750g1gene9163Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9442rna9442-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21261.1cds9412Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9442 ID=rna9442|Name=rna9442|organism=Nannochloropsis gaditana|type=mRNA|length=1260bp
AGCAACTCGACATCAGGAGGCCGCCCCCCAACGAACGCACTTTTAGAAGC
CCGGCAGTCGATTCGTACATTGAAGAACTCCTACCTCGGTTCAAAGACCC
GGACATCGCGGTCTTATTCGCCAATTGTCTGCCCAACACGCTGGACACGG
CGGTGTACCACGCCAACAGCACGGACACGTTTTTAGTGACGGGCGACATC
CCGGCCATGTGGCTCCGGGACAGCGCCTGGCAAGTCATGCCCTACATGCG
ATTCCTCAGAGAGGACCCGGGCTTGCAAACGCTGGTGCGGGGGGAAGAGG
GGAAAGGGCCGGGCGGTTCCCGAGCATGAAGGGAGGCACCTCCAAGTCCA
CATACCTCCGGGTCTCTTTTTTTTCCCTCACAAAATTAAAATTTCGGACC
CCCCAGGTCTGCGGGCTCGTCCGGCGGCATGCCTACTCCTTGCTCCACGT
CCACCCCTACGCCAACGCCTTCAACTTCAACGACAGTAACCTCTCCCACG
GCCACCACGATGACCAGGTCCATCCCCCCATGAGCGCCGGGGTCTGGGAG
GCCAAGTACGAGGTCGACTCCCTGGCAGCCTTCCTCCGCCTCTCACGTTC
TTACTACCAACACACGCACGACCTCGCCTGTTTTCAATACCCGGATTCTC
CCTCCCTTCCCCCTTCTGCCTCCTCCCCCCCTTCCTCCTCCCCTTCCTCC
TCCCTCTGGCTCGGCGCCGTCCGCCTCGTCCTCGACACCCTGCAGGCCCA
GCAAGCTGGCACCCTGGAGCACCTCCCCTCCGTTCCTCCCTCCTTCCCTC
CCTCCCTCCCTCCCTCCTTCCCGTACACGTTCCAACGTGAGACGCGCGTG
GCCAGCGAGACGCAATGGGGCGCGGCGGGAGAGGGAGGGGCTTCTCGCCG
GTGTGCTTTGGTCCGTTCGGCTTTCCGCCCCTCGGATGACGCCACCCTGC
TCCCCTTTCACCTCCCCGGCAATGCCATGCTCAGCGTCGAGTTGAAGGAG
GTGGGAAAGATGCTGGAAGAGGGCGGGGAAGAGGGCTGGGGGGAGGGCGG
GGGGGAGGTGGGGCGGCGGTGCCTGGCGATGGGGGAGGAGATCGGGCGGG
CCGTGGAGGAGGAGGGGGTGGTGTGGGTGAAGAGGAGGGAGGGAGGGAGG
GGAGGGAAAGAGGAGGCGGAGGGAGGGGGCTGCGGGATGGAGGGGATGGA
GTCGGTGTACGCGTATGAGGTACGAGGTCAGGGGGAGGGAGGGAGGGAGG
GAGGGAGGGA
back to top

protein sequence of rna9442

>rna9442-protein ID=rna9442-protein|Name=rna9442|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MPAMAKHTGSGPAFPAATDATTVSYQQAKEHTPLVIEAVPLADDRTPIIG
SALEMELERVLSNRPRRIFLASLAALALLILGSLFLVLASSRGGHEQVPP
VT
back to top

mRNA from alignment at KK037253.1:299822..301111+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9442 ID=rna9442|Name=rna9442|organism=Nannochloropsis gaditana|type=mRNA|length=1290bp|location=Sequence derived from alignment at KK037253.1:299822..301111+ (Nannochloropsis gaditana)
AGAACTATGCCTTCTCCCACTGCGCGCTGTGACCGTGCATCTCTTAACGT
CCCTTGCACGAGTACAAAGTCGTCATAAGCCGTACAAATTTCATGGATTA
AGAAGGGAGGCAATTTAATTATTGTTTTTTTcatccacccccgcccccga
gACCTGTTGTCATGCTGCGGTGACAAGCAAAGGATCAAAATCTAACTTCT
TTCTCAGAACACTTGGCACGCCTCACCGCACCAGCCATGTCTCTTACATG
CTGCCTCTGCGGGTTAACTACAACACGTGCATCCCCTGTTGACCGAAGTA
AACCGGTGGGAACGCCTTTCTTTGCTTCGATGCTGCCGAGTGACCTTTCG
TTTACTCTATCAGGCCCCGTTTCCCACAACGGATGAACTTGTGCTAAAAA
TGACAGAGAAAACAAAAGTACCGGCTAAACAGGACGCATTATGTCCGTCC
TGCACACCAATTATGTCCATGTTATTTGTAAACTTCCTGGCCTGATCTGT
ACGcacccctccgtcttcctctgctttTTTCTCCACAATGCCAGCAATGG
CTAAGCATACAGGCAGCGGCCCGGCCTTCCCCGCAGCAACGGATGCGACG
ACTGTGTCGTACCAACAAGCCAAGGAGCACACGCCTTTGGTCATCGAAGC
AGTGCCACTTGCGGACGATAGAACGCCCATTATCGGGAGTGCGCTTGAAA
TGGAGCTGGAGAGAGGTAAAAATATGGAAATCAAGGACTTGACACGTCGT
GTGCTACGAACGGTGACACAAACATGCCCGACATCCCTCCTGCACCCGTC
CACAGTGTTGTCAAATCGTCCACGCCGCATTTTTCTGGCCTCGCTGGCTG
CTCTAGCCCTTCTTATCCTGGGATCACTATTCTTGGTGCTAGCCTCAAGC
CGCGGCGGCCACGAGCAAGTCCCACCCGTGACCTGAACCACAGACAACAT
CGGGCCTGCGAGGCTTCCTTGACAAGGATATACAAAGGATCCGAGGGATG
CGTGCAGACAAGGgtgtgtgggagggaagagaagggagttAGCCGATCCA
TGCCCCTTTAAGGCTGTGTCGGTAATAGTCGTGATAGCGGAACGGCGATG
GCCGCTTGAGGTACGGATCATgaggtggagggatggaatgTAGAGAAAGC
AAAGCAAAGGTGTACAAAGCAGCTCTGACGAAGGCATAAAGGGAGGCCGG
CAGGTCCGTGTACGCCGGAAAGGGTGGGGTAACAGGCATAAGCCTCCCCG
AATAAAACCCACAAAGAAGTAATTCACGTGCAAGACCCGA
back to top

Coding sequence (CDS) from alignment at KK037253.1:299822..301111+

>rna9442 ID=rna9442|Name=rna9442|organism=Nannochloropsis gaditana|type=CDS|length=618bp|location=Sequence derived from alignment at KK037253.1:299822..301111+ (Nannochloropsis gaditana)
ATGCCAGCAATGGCTAAGCATACAGGCAGCGGCCCGGCCTTCCCCGCAGC
AACGGATGCGACGACTGTGTCGTACCAACAAGCCAAGGAGCACACGCCTT
TGGTCATCGAAGCAGTGCCACTTGCGGACGATAGAACGCCCATTATCGGG
AGTGCGCTTGAAATGGAGCTGGAGAGAGTGTTGTCAAATCGTCCACGCCG
CATTTTTCTGGCCTCGCTGGCTGCTCTAGCCCTTCTTATCCTGGGATCAC
TATTCTTGGTGCTAGCCTCAAGCCGCGGCGGCCACGAGCAAGTCCCACCC
GTGACCTGAATGCCAGCAATGGCTAAGCATACAGGCAGCGGCCCGGCCTT
CCCCGCAGCAACGGATGCGACGACTGTGTCGTACCAACAAGCCAAGGAGC
ACACGCCTTTGGTCATCGAAGCAGTGCCACTTGCGGACGATAGAACGCCC
ATTATCGGGAGTGCGCTTGAAATGGAGCTGGAGAGAGTGTTGTCAAATCG
TCCACGCCGCATTTTTCTGGCCTCGCTGGCTGCTCTAGCCCTTCTTATCC
TGGGATCACTATTCTTGGTGCTAGCCTCAAGCCGCGGCGGCCACGAGCAA
GTCCCACCCGTGACCTGA
back to top
Synonyms
Publications