rna9436, rna9436 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9436
Unique Name	rna9436
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2589
Alignment location	KK037253.1:284818..286953 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100618g6.815.mrna
Orig protein id	gnl\|cribi\|Naga_100618g6.815
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:284818..286953 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100618g6	gene9157	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21267.1	cds9406	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9436	rna9436-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:284818..286953-
coding sequence from alignment at KK037253.1:284818..286953-

mRNA sequence

>rna9436 ID=rna9436|Name=rna9436|organism=Nannochloropsis gaditana|type=mRNA|length=2589bp
CTAAACATTAAGGTATTTACATTGATATCATTCTCATCATCCCTTCAATT
GCGGCACATACGATAGTTAAAGCTAAAGGATAATACACACTTCGACAATG
CGTCTCTATGTTTCATTTGTGTTGCTGCTAGCGCCCATTGCCGTCTCAGC
ATCCGCTGGCTCCTCCATCGCCCGCCTTTTTGGCAGCGACTTGTCAATGC
CCCGAGATTGGTTGCGGGCATTGGATCACAGCTACGGCGGCAAAGATGCC
GGCCGCACCGTCGACGTCTCCTTCGACTGGCACCATTCGGAGTCGACCGA
CCCCATCCCGGAGCAGCCGATCGACGAAACGCCGTCCATGCCGATGGAGC
CGGCCGCGATGACGACCCCAGAGGCGCCGGAGGTTCCTACCCCAGAGACT
CCTGCGACGCTTGAGGTCCCGGAGATCCCCGCTATCCCCGAGATCCCTGA
AGTCCCGGCGGTGCCGGCGATCCCCGAGGTCCCGGCGGTGCCCGAATCGA
CCGAGGTGCCTGAGATCCCGATCGAGGAGACCCCCTCTATGCCGGAGACC
ATGACGACCACGGAGGATGTTGAAGTGCCCGAGGTCCCGGAGATCCCCGA
GATCCCGGAGATTCCGGAGATCCCCGAGATCCCCGAGATTCCGGCGATCC
CCGAGATCCCGGAGATCCCCGACATCCCGGCGATCCCCGAGGTCCCGGCG
GTGCCCGAATCGACCGAGGTGCCTGAGATCCCGATCGAGGAGACCCCCTC
TATGCCGGAGACCATGACGACCACGGAGGATGTTGAAGTGCCCGAGGTCC
CGGAGATCCCCGAGATCCCGGAGATTCCGGCGATCCCCGAGATCCCGGAG
ATCCCCGAGATCCCGGCGATCCCCGAGGTCCCGGCGGTGCCCGAATCGAC
CGAGGTGCCTGAGATCCCTATCGAGGAGACTCCGTCCATGCCGGAGACCA
TGACGACCACGGAGGTCCCTGCCCTTTCCACCCTCCCCTCGCCCCCCCAG
CGCAAGCTGGCTTTAGTGGGCGATGCCATCACGCCCCGCGATACCCGGGT
CGGAGAGGAACGTTCTTTCGTCGGCTCGTTCGATTGGAACATCCCCACCT
TGCCCCCTCCCCCCCCTCTCCCCACCATCCCTGCACCTTTGGATACCCTC
TTCCCCTCCCCTTTGTCGGATGCCGCCTGGCAAGTTCGCCTGGTCTTGTT
GGGCAGCGCTAAATTGGCGGAGGAAGACGCCAACCTGGTGGCGGAACGTT
TCCAAGCCCTGCTGGACAGCCGGTTGGAGGAGGTTGGAGAGACCTACCAA
GGGGAGGTGGCGGCGAAAATTGCCTCCCTGGGAGCGGGGAACCGCTTGCG
TGGGAAGGCCATCCCGGGCATGAAGGACCTGGAGGCTATTCCCCACCCGC
CTTCCTGCGTGACGGAGAGCCTGCCGTCCTTCATGGTGGTGGCGGGCAAT
GCGCCCGTTTCTTCGGAGACTTTGCGCGCTGCCTTGGACAGTGAGACCTT
CCCGTCCATCTTCGCGGCACCGACGGACTACTGTGGCGTCAAAGTGAGCG
AGATTGTCATGGCCTAAGGGGTGACGCCCCGTGGAGGAGGGGTGGACGCT
GGGGGGGGGAACTGCGTTGTCCGCTCCGGTCCACATGCTGAAGGAGAACG
GAGAAGAAATGAAGGATGACGGGAGAGGACCGCCGGCTAAAGGTGGGCGT
AGCACCCGGACGTTGGCGCGGGGATTTTATTTTGAATTTGTGCATTTGCA
GCCGTCTGTGACCAGCCGCGGGACTTTTGGCCGAAAAAACCAGGGCCGGA
GGTCGGGACTTTTCGGTCAGAGAGAATTCGAGGCGAGGGGAACACGATCG
GTGGTCGACCGGGGCGAGACAAAGAGGGAGGGATCCTGATCTGTCGACAA
GGCCGGGGTAAACAGCGTGTGGCGCCAGAACATAACAATGCGTAATCGTA
TCATTATACTCAAAGCATCCGGTGGGAGGTCGGACCTGGATTAAGAAAGA
AGAGGCCTCGAGCAGCCTAAAAACCTCGTGTCCTTGTCCTGTGGACGGAG
TGCCCGGACCCAGAGCTTGCTCTTGTTTGATTGTTTTTTCCCGCCTTCCG
TGGTGCTTTCTGACATTCTTGTCGACGGGAAACAATAGCCATGGTGAAAA
ATTGGTTTTAGGTTTTATCCGAAAGGTTGTTTTTGGTTCGGGTTTTGTGG
AAAAACGAGCTATCCCGCCAGGTGTGGGTGGGAAATCGAGGGGTCTAGCG
ACGTACCATCGGCCCAGCTCAGGCGTGGCCGTCCCCTGATACCGTGCTAG
ACGAAGCAGAACCCAATGCACCACCGTGGAGGCCCTCGCTATCCCTGTCG
TCACCCAGGCGATGCGTCGGCGGGGGACTCGGGGGGAAAGGGAGGAGAGG
AGGGGCACGGAGTAGAGCCACAAAATGGGAGGAAGGACGGTATAAGGAAA
CGAAAAGGGCGGAAACCATGGCGAAAGAAACATCGAGTGCCCGTGCGGGG
GAAGACTACGATGCAGGACCGGGCAGCATTGACGCTTCTTTTGAACCTTT
CCTTGCCTACGGCCATGCTGGCCCTCTCAAAGCCCCTCC

protein sequence of rna9436

>rna9436-protein ID=rna9436-protein|Name=rna9436|organism=Nannochloropsis gaditana|type=polypeptide|length=346bp
GRRFKGSDKEGRRGFVRAFLQENIIQRPPLLLGAGSTTSPLHIPICTPTL
NLPSLPPSLPLSVAPGRPPFLRLLLPDAARTCLRALWDPATSHPRVFGGG
HFSLLRGVRGLHPGLHRPEQLQVQTPRLQPDGPVHRGGRVGARRRGGAPG
LPVLGPQATGHERGRRGVERVLPPLLRPDRRHGGHPRAPHPDLPPDLPPA
LPPGLSHGLDRGRLSSSSSPPARPTCGLRGDGGGCGGKGDERGRGKVRGG
GGWRGGRGPGGGLCASRWIARAACGEEGGGGGGGGGGGGDGDGGGGGGGE
GSGEGGGEGRCCALARAPRDLGREGGRGEGREGGKEGKQPVGREVG

mRNA from alignment at KK037253.1:284818..286953-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9436 ID=rna9436|Name=rna9436|organism=Nannochloropsis gaditana|type=mRNA|length=2136bp|location=Sequence derived from alignment at KK037253.1:284818..286953- (Nannochloropsis gaditana)
GGGAGGAGGTTCAAAGGTAGTGATAAGGAGGGAAGGAGAGGATTTGTGCG
TGCTTTTCTTCAAGAAAATATAATCCAGAGGCCCCCTCTCCTTCTCGGAG
CTGGTTCCACGACCTCCCCCCTGCATATTCCGATCTGCACACCAACCTTG
AACCTTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCAGTTGCACCGGGCCG
ACCCCCGTTCCTTCGTCTCCTCCTACCGGATGCGGCACGGACGTGCCTGC
GAGCGCTGTGGGATCCTGCGACGAGCCACCCACGGGTATTTGGGGGAGGG
CATTTCTCGCTTTTGCGGGGAGTGCGCGGGCTCCACCCGGGGCTGCATCG
ACCTGAACAACTTCAAGTGCAAACTCCAAGATTGCAACCGGATGGCCCGG
TACATCGGGGAGGAAGGGTCGGGGCCCGAAGGCGGGGCGGGGCGCCTGGT
CTTCCGGTGCTGGGCCCACAAGCAACCGGACATGAAAGAGGCCGGCGAGG
GGTGGAAAGAGTTCTACCGCCTCTTCTGCGTCCGGACAGGCGCCACGGGG
GTCATCCCCGTGCCCCCCATCCCGACCTCCCTCCCGACCTCCCTCCCGCC
CTCCCTCCCGGCCTCTCCCACGGCCTTGACCGGGGGCGCCTTTCCTCATC
CTCCTCCCCTCCTGCCCGTCCCACCTGCGGCCTACGCGGGGATGGGGGGG
GATGCGGAGGGAAGGGTGATGAGCGGGGAAGGGGGAAGGTTCGGGGAGGA
GGAGGATGGAGGGGAGGGCGGGGGCCGGGGGGCGGTCTTTGTGCCTCCCG
GTGGATTGCCAGGGCCGCGTGTGGAGAAGAAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGATGGTGATGGAGGAGGAGGAGGAGGGGGAGAG
GGCAGCGGGGAAGGTGGAGGAGAAGGGAGGTGTTGCGCCCTTGCTCGTGC
ACCGCGAGATTTAGGGAGGGAGGGAGGGAGAGGAGAAGGGAGGGAGGGAG
GGAAGGAGGGTAAGCAACCTGTGGGAAGGGAGGTCGGATGAAGGAGGGAA
GAGGGGAGGGAGGGGGAGTGAGGGGGAGGGAGGGAGGGAGGCATGCCCCA
GGAAAAGGTCGGTGGGAGGTTGGGAGGGAAGGAGGAAGGGACGCGGGGGG
AGGAGATGCTGGATAAAGGAGCCATTAACGTGGTTCATGCACCCTGGGAG
CTCGGGCGAAAGGGGGGGGGGGAGGCGGGAAATGCGGCGGCAGGACCTAA
GGTCGTGAAAGGAGGGAGCGGGGCGAGGAAGGGGGTACGAGGAGGCAAGG
AGGGTGGGAGAAGGACCAGAAACGAATGATGGGGAGGGAGGAAAACCCGC
AGCCTGGGGGAGAAGGGGTGGGGCGGGGAGGCAAGGCTAGGACGAGCAGA
GACGGCGTCGGGGACCGGAAGGCTTTCCTCCCTCGGACCGGGCCCCCCGT
GGGAGGTGACGAGCCGTTACAAACCGTTGCATGAAAAACGGGTCGTAACG
GGCGGATGGAGTGAGGATTGGGTGGAAGAAGGAGGGTTGGGACCCCGCGG
AAGACACTAGTAACGGCATCCCAGGGCAGCTTTTGCTGTTGCTTTCTAGA
AGGTTCGATGAAGCAGATAGCGGCGACCTGGATACATCCGGGTAGTATGC
TCCCAGTCGCGGGGGACTCACGGGCGAGATGAAGTTGTGAAGGTGCCCCT
CCGTTGACAAGCAGGAGGGATGGAAGCGAGGAGTAAGGAGGGGAGGTGAC
GGGAAGGAAAGCGAATGAGAAAACGTATAAGATCCCAAAAAAGAAGACCA
GGAATGATAAGATGACCCGAGAAGAAAAGGCAAATTGGAAGGAAAACGAG
GCAGGACACTCGCGTGCAAGCAAGGGGAGCATGGGAGAGGAATGGACGAG
GGCCCAACCCCGCTCTGCTTGTTGCGCTCTGGCACGGTCGATACGGAAAC
GACGGCTGTGTCGGTGGATAAGCTCACAAGAGAGAAAGGGCCCAAGAAGA
GTGTGCCGTCTACATCTAGGCAGGGCGGCTTAACCGTGCGTGGCTTGGAT
CGCGCGAGTGGGAGGGGCTTTGAGAGGGCCAGCATGGCCGTAGGCAAGGA
AAGGTTCAAAAGAAGCGTCAATGCTGCCCGGTCCTG

Coding sequence (CDS) from alignment at KK037253.1:284818..286953-

>rna9436 ID=rna9436|Name=rna9436|organism=Nannochloropsis gaditana|type=CDS|length=1041bp|location=Sequence derived from alignment at KK037253.1:284818..286953- (Nannochloropsis gaditana)
GGGAGGAGGTTCAAAGGTAGTGATAAGGAGGGAAGGAGAGGATTTGTGCG
TGCTTTTCTTCAAGAAAATATAATCCAGAGGCCCCCTCTCCTTCTCGGAG
CTGGTTCCACGACCTCCCCCCTGCATATTCCGATCTGCACACCAACCTTG
AACCTTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCAGTTGCACCGGGCCG
ACCCCCGTTCCTTCGTCTCCTCCTACCGGATGCGGCACGGACGTGCCTGC
GAGCGCTGTGGGATCCTGCGACGAGCCACCCACGGGTATTTGGGGGAGGG
CATTTCTCGCTTTTGCGGGGAGTGCGCGGGCTCCACCCGGGGCTGCATCG
ACCTGAACAACTTCAAGTGCAAACTCCAAGATTGCAACCGGATGGCCCGG
TACATCGGGGAGGAAGGGTCGGGGCCCGAAGGCGGGGCGGGGCGCCTGGT
CTTCCGGTGCTGGGCCCACAAGCAACCGGACATGAAAGAGGCCGGCGAGG
GGTGGAAAGAGTTCTACCGCCTCTTCTGCGTCCGGACAGGCGCCACGGGG
GTCATCCCCGTGCCCCCCATCCCGACCTCCCTCCCGACCTCCCTCCCGCC
CTCCCTCCCGGCCTCTCCCACGGCCTTGACCGGGGGCGCCTTTCCTCATC
CTCCTCCCCTCCTGCCCGTCCCACCTGCGGCCTACGCGGGGATGGGGGGG
GATGCGGAGGGAAGGGTGATGAGCGGGGAAGGGGGAAGGTTCGGGGAGGA
GGAGGATGGAGGGGAGGGCGGGGGCCGGGGGGCGGTCTTTGTGCCTCCCG
GTGGATTGCCAGGGCCGCGTGTGGAGAAGAAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGATGGTGATGGAGGAGGAGGAGGAGGGGGAGAG
GGCAGCGGGGAAGGTGGAGGAGAAGGGAGGTGTTGCGCCCTTGCTCGTGC
ACCGCGAGATTTAGGGAGGGAGGGAGGGAGAGGAGAAGGGAGGGAGGGAG
GGAAGGAGGGTAAGCAACCTGTGGGAAGGGAGGTCGGATGA

Synonyms

Publications