rna9429, rna9429 (mRNA) Nannochloropsis gaditana

Overview
Namerna9429
Unique Namerna9429
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length984
Alignment locationKK037253.1:261344..263565 +

Link to JBrowse

Properties
Property NameValue
Products-formylglutathione hydrolase
Orig transcript idgnl|cribi|Naga_100331g4.6027.mrna
Orig protein idgnl|cribi|Naga_100331g4.6027
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:261344..263565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100331g4gene9150Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9429rna9429-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21276.1cds9399Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9429 ID=rna9429|Name=rna9429|organism=Nannochloropsis gaditana|type=mRNA|length=984bp
CAACTACCCCCAAAAGTGCACAGACACATAGAAGCCAGGCGTCATGGCCT
CTGGCATCAGCAGCAGTCGATTCCGGCAGGGTGCGGGTTTGGGCAGCCCC
CCTTCTCGCAGGCCGAAGCCCGGGGCTAAGGGCAAGGGCTTGGACGAGGA
AGAGCTGGAGGAAATCCGAGAGGCTTTTAACCTCTTCGACAGCGACGGGA
AAGGCACGATTGACGTCAGGGAATTGAAAGCCGCCTTCCGAGCCTTGGGA
TTCCAGGTCAAAAAAGCAGAGATCCGCACCTTTCTCCAAACCATTGACAA
AGAGATGGCGGCCACGGTCACCTACGATGAGTTCTTGGACATGGCTGCGC
CCAAGGTGGCTAACCGGGACGAACGGGAAGAGATTCAAAAGGTTTTTGCC
CTCTTTGACGACGATGGCACGGGCGCGATTTCCTTCCGGAACCTGAAACG
GGTGGCCACGGAGCTGGGAGAGAACTTGACGGACGAGGAACTGCAGGAAA
TGATTGACGAAGCAGACAGGGACCAAGACGGGGTGATCAACGAGGAGGAA
TTCTTCCGCGTTATGCGAAAACGAGGGAATGCGCCCTTGGATGACATTGA
CTCCGACGACGACTATTGAGGTGCAGGGAGGGTCGGTTTGGATGTGGAGG
TTAAGGATGGGCAATGGGCAAGAACACAGGAAGCAAGAGATATGAAGGCA
GTGGAAGTAGTGGAAGGAAGGTGGAATCAAAAGAAGAAAGTGGGGAAGGG
CGTGCAGGCGAGGCACAGGTCGGGACGGAGGGCAAGTGAGAGGGAGCGGC
GCATCACGCATTCAGAATATAACGACGGGACGGGGAGTCACGGTTTTAGA
TGAGCATAAAAAGAAGGATGCCCTTGAATTTGGCGCCAAACTCTCTTTAT
TTTGGAGCGCGAAGGGTTACAGTGAAGTGGCTACCTAAGGAGTTAAAAAA
AACCCAGAAAAAAACCAAGGCACTTTAAACCAGC
back to top

protein sequence of rna9429

>rna9429-protein ID=rna9429-protein|Name=rna9429|organism=Nannochloropsis gaditana|type=polypeptide|length=305bp
MSNVDASDSAAQGLTRLNRWKACGGFFEQYTHPSSSTNTAMRFTVYFPPQ
SAHKPVPVLYFLSGLTCTDENVVQKGFVQSQAAKRGLAVVCPDTSPRGAG
VDGEDESWDFGTGAGFYVDATASKWSRHYNMFTYVTQELPAILHRHFPTA
LLPDARSICGHSMGGHGALVCAMKTFLSQGGPPYKSVSAFAPIAHPTACP
WGQKAFGGYLEGDQGAGKAGEGWDATLLMEREGPFPFPLLVDQGTADTFL
EGQLMPEALEKACASKGQDATIRRQDGYDHSYFFISTFMADHIDFHANAL
GLPRE
back to top

mRNA from alignment at KK037253.1:261344..263565+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9429 ID=rna9429|Name=rna9429|organism=Nannochloropsis gaditana|type=mRNA|length=2222bp|location=Sequence derived from alignment at KK037253.1:261344..263565+ (Nannochloropsis gaditana)
CGCCCGAAAGCAACACAAGGGAGGCAACGAAACCCACTATATGTACCGAA
GATCACGCCTGACTTGAGCGTTCCCCTTCCAAAAGCGCGTGTCAAAATTT
AAACCTCCATCGGTCACGGTCTCGGACTCAGTCTTGGAGTGTGGTTGGCG
TTCATCACTATTTTCAGAAGGTCATTCATGAGAATCTGAAGGATACATAG
GAAAGACAAGTCCTCAACTACAAATAAAGCACCCAGGAGTCCATCAATAC
CCTCTGACGTAATGTTTTGTCCTCATAGTGCTCCAACTTTCCCTATAGCC
CACCCTGTTTATTATTTCGATGCTTAGTAGGTATTCGACGCGTGGCGTGG
GTAGGGTGAAAGGTAGAGCGACTGTCTCCAGAAAAATGACACACAGGGCT
TTGAGGTACACAATTCACGTCATGCACATACTTACTAGATAAATCAACGT
GTAGGTTGCGCTCTCATGTCCAATGTGGACGCCTCCGACTCGGCGGCGCA
GGGTCTTACACGCCTGAACCGGTGGAAAGCATGCGGCGGGTTTTTTGAGC
AATATACCCATCCGAGCTCCAGCACCAACACCGCGATGCGGTTTACCGtt
tactttcctcctcagtcTGCCCATAAACCTGTGCCTGTCCTCTATTTCCT
ATCCGGCCTGACGTGTACGGATGAGAACGTGGTGCAGAAAGGATTTGTCC
AGTCCCAAGCCGCGAAAAGGGGTTTGGCGGTGGTGTGTCCGGATACCTCC
CCCAGAGGCGCCGGTGTggatggcgaggacgagAGCTGGGATTTCGGCAC
AGGGGCAGGATTCTACGTGGATGCGACGGCGAGTAAATGGTCTCGGTACG
TGGCATATTCGCGGTCCTGGAGGTCATGGGATCTGACTCCGTGCGCAGAA
CCCGACGACGTTTGGTTACAGGGGGACACCCACGTAATGGGATGTACGAT
GATCTTTGTTTCCAGTTCGGtacggagggagaaaaaaatgtttCTTCCAA
ACAGCGTCCCTCGCGCAGCCCCCACATGCCCGtagcctccctgccctgac
tcctccccgctctccgctccctccaggcATTACAACATGTTCACGTACGT
CACACAGGAGCTTCCGGccatcctccaccgtcatttccccaccgccctcc
ttcctgacgCCCGGTCCATCTGCGGGCATTCCATGGGAGGACACGGTGCC
TTGGTCTGTGCCATGAAAACCTTCCTCTCGCAGGGCGGTCCCCCCTACAA
atccgtctccgccttcgcccccATTGCGCATCCCACCGCCTGCCCGTGGG
GCCAGAAAGCTTTCGGTGGATATTTGGAGGGGGACCAGGGGGCTGGCAAA
GCCGGGGAAGGCTGGGACGCGACCTTGCTcatggaaagagaggggccctt
tcccttccccctcctggtcGACCAGGGTACGGCGGACACGTTTTTGGAGG
GACAATTGATGCCAGAGGCCTTGGAAAAGGCCTGTGCGAGCAAAGGACAG
GACGCGACGATTCGTCGGCAAGACGGCTACGACCACTCCTATTTCTTCAT
CAGTACATTCATGGCCGATCACATCGATTTCCACGCCAACGCCTTGGGTC
TCCCTAGGGAGTGAGCTTGTCCTCGGTGGTCATgaagggggcggaaaggg
gcaATGCTTGCGTCTTCAGATAGGACCGACGTCACCGGGCCACGCGTGTG
GGGTAGTCCATCGGCTCGGTGTGGATGGAATTTGCCGCGCGGTCTGTCCG
TGACGTGAAGAAGACGCCACGACCGAGAAAAGTGTAGAGGAGCGCTGTCC
TCTGATTGTAGGTGGTGCCGTGCCTGGGAGCGAAAAGCGATCTCTCTGCG
ATTGCAAGGTGGCTACGGGCATGGGCTGGCTTTGATCCGATTGCGACGCC
CGGAGTGGAGTGGGAGGACAGGATGTGCCAATTAAGTTCCGTGTTCGGCC
TGTCACAGTAAATGAGGAGGGGATCCGCCACCAGCGTGTAAGAGGGGAGA
TGGATAGTAAGTGTTATGACAGGAAAGGAGCATAGAAAGGTTCGTGCAAG
AAAAAATCATCTCCCACGAAGTAGGGGTGCCAGAGATTTCCCTTGAGATC
CGTGGTTGTAaatttttatttttcttcctttgtTGATTGTACCTTCACGT
ACACTCCTGTTTTGTCATCGAATCTGATGATCCTCCGATTAAGCGATGAA
AAATAAAATTTACCATAATTAA
back to top

Coding sequence (CDS) from alignment at KK037253.1:261344..263565+

>rna9429 ID=rna9429|Name=rna9429|organism=Nannochloropsis gaditana|type=CDS|length=1836bp|location=Sequence derived from alignment at KK037253.1:261344..263565+ (Nannochloropsis gaditana)
ATGTCCAATGTGGACGCCTCCGACTCGGCGGCGCAGGGTCTTACACGCCT
GAACCGGTGGAAAGCATGCGGCGGGTTTTTTGAGCAATATACCCATCCGA
GCTCCAGCACCAACACCGCGATGCGGTTTACCGtttactttcctcctcag
tcTGCCCATAAACCTGTGCCTGTCCTCTATTTCCTATCCGGCCTGACGTG
TACGGATGAGAACGTGGTGCAGAAAGGATTTGTCCAGTCCCAAGCCGCGA
AAAGGGGTTTGGCGGTGGTGTGTCCGGATACCTCCCCCAGAGGCGCCGGT
GTggatggcgaggacgagAGCTGGGATTTCGGCACAGGGGCAGGATTCTA
CGTGGATGCGACGGCGAGTAAATGGTCTCGgcATTACAACATGTTCACGT
ACGTCACACAGGAGCTTCCGGccatcctccaccgtcatttccccaccgcc
ctccttcctgacgCCCGGTCCATCTGCGGGCATTCCATGGGAGGACACGG
TGCCTTGGTCTGTGCCATGAAAACCTTCCTCTCGCAGGGCGGTCCCCCCT
ACAAatccgtctccgccttcgcccccATTGCGCATCCCACCGCCTGCCCG
TGGGGCCAGAAAGCTTTCGGTGGATATTTGGAGGGGGACCAGGGGGCTGG
CAAAGCCGGGGAAGGCTGGGACGCGACCTTGCTcatggaaagagaggggc
cctttcccttccccctcctggtcGACCAGGGTACGGCGGACACGTTTTTG
GAGGGACAATTGATGCCAGAGGCCTTGGAAAAGGCCTGTGCGAGCAAAGG
ACAGGACGCGACGATTCGTCGGCAAGACGGCTACGACCACTCCTATTTCT
TCATCAGTACATTCATGGCCGATCACATCGATTTCCACGCCAACGCCTTG
GGTCTCCCTAGGGAGTGAATGTCCAATGTGGACGCCTCCGACTCGGCGGC
GCAGGGTCTTACACGCCTGAACCGGTGGAAAGCATGCGGCGGGTTTTTTG
AGCAATATACCCATCCGAGCTCCAGCACCAACACCGCGATGCGGTTTACC
GtttactttcctcctcagtcTGCCCATAAACCTGTGCCTGTCCTCTATTT
CCTATCCGGCCTGACGTGTACGGATGAGAACGTGGTGCAGAAAGGATTTG
TCCAGTCCCAAGCCGCGAAAAGGGGTTTGGCGGTGGTGTGTCCGGATACC
TCCCCCAGAGGCGCCGGTGTggatggcgaggacgagAGCTGGGATTTCGG
CACAGGGGCAGGATTCTACGTGGATGCGACGGCGAGTAAATGGTCTCGgc
ATTACAACATGTTCACGTACGTCACACAGGAGCTTCCGGccatcctccac
cgtcatttccccaccgccctccttcctgacgCCCGGTCCATCTGCGGGCA
TTCCATGGGAGGACACGGTGCCTTGGTCTGTGCCATGAAAACCTTCCTCT
CGCAGGGCGGTCCCCCCTACAAatccgtctccgccttcgcccccATTGCG
CATCCCACCGCCTGCCCGTGGGGCCAGAAAGCTTTCGGTGGATATTTGGA
GGGGGACCAGGGGGCTGGCAAAGCCGGGGAAGGCTGGGACGCGACCTTGC
TcatggaaagagaggggccctttcccttccccctcctggtcGACCAGGGT
ACGGCGGACACGTTTTTGGAGGGACAATTGATGCCAGAGGCCTTGGAAAA
GGCCTGTGCGAGCAAAGGACAGGACGCGACGATTCGTCGGCAAGACGGCT
ACGACCACTCCTATTTCTTCATCAGTACATTCATGGCCGATCACATCGAT
TTCCACGCCAACGCCTTGGGTCTCCCTAGGGAGTGA
back to top
Synonyms
Publications