rna9425, rna9425 (mRNA) Nannochloropsis gaditana

Overview
Namerna9425
Unique Namerna9425
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length318
Alignment locationKK037253.1:240234..240992 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100364g2.2611.mrna
Orig protein idgnl|cribi|Naga_100364g2.2611
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:240234..240992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100364g2gene9146Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9425rna9425-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21279.1cds9395Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9425 ID=rna9425|Name=rna9425|organism=Nannochloropsis gaditana|type=mRNA|length=318bp
ATGGTGTACCCCGGAGGTACCCCAGTCGGGGCTCCTGAAAGCATAAAACG
CAGCAAGATTTCACAGTGCTTTCAAGACACGATCGTGACAAGCCGACAAG
TGAATCAGGTTATTCATGTCTGTGTAGCAGACGCATTCCTTGAACGGTTC
GAGGGGCATGGTGACAGGATCGTAAGGAATGTAGGGACAGGCAGGGACTT
GTGCGGGCGAGGAGACGAGCTGAAGCGTGATATTATGAGCTGGATTGTGT
CAGGAACGCTCTCAAGCGCCGTTCAAGGGGGCATCGAAAGAAATCTAAAA
AGAAAGTACACATCTTGA
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protein sequence of rna9425

>rna9425-protein ID=rna9425-protein|Name=rna9425|organism=Nannochloropsis gaditana|type=polypeptide|length=152bp
MKPSHRVSLDGVGPVASADRTSCSINCTRLPLLRHWVDFYILTHKKKSLM
LLQDIYPQVSLVERMTSRGRCSEQLQHQHWKSARLEYKRKYLQEKIPAPN
LEKYTKTKFWYLQGILVIVGREQFQQNPNSEQGAGLEYTFLLLVITTTSG
YK
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mRNA from alignment at KK037253.1:240234..240992-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9425 ID=rna9425|Name=rna9425|organism=Nannochloropsis gaditana|type=mRNA|length=759bp|location=Sequence derived from alignment at KK037253.1:240234..240992- (Nannochloropsis gaditana)
ATGAAGCCCTCCCACCGGGTGTCCCTGGACGGTGTTGGCCCCGTGGCGTC
AGCCGACAGGACTTCGTGTTCTATCAATTGGTGGGGCAGAGCAAGTGGAT
GCTGGCGGAACTGACGGTGTATGTGAAGGCAGTGGTCTCTCAAAATTCCT
CGATCGATAAGTCGTCCGTGTGTGGAGGCGGCACTAAACCCGCCTACATG
CGCTCCGCACACGCCTTCACGTGCACCGCCGCTTCCGCAGCACCCGCTTG
CCCTTGCTCCGTCATTGGGTCGATTTTTACATTCTGACACACAAAAAAAA
GTCACTTATGCTTTTGCAAGACATTTACCCGCAAGTCAGTCTGGTAGAAA
GAATGACTTCCAGAGGCCGGTGTGAGGCGAAAGGATGCAAGAGCTAGGTA
ATTAACTCTGATTACATTCCCTGATAGCTGCTCGGAGCAATTACAGCACC
AACATTGGAAAAGTGCACGCTTAGAATATAAAAGAAAGTATTTACAGGAA
AAAATACCAGCACCAAACTTGGAGAAATACACAAAAACTAAGTTCTGGTA
CCTACAGGGAATTCTTGGTAAGAAATGAGCTTCTAGACGAGCGTTAAAAC
TCACTTATAGAAGGTACTGAGCAGTACCTCCTGGTACTACCATTAGTAGT
TATAGTAGGTAGAGAGCAATTTCAGCAGAATCCGAACAGCGAACAAGGAG
CAGGTCTTGAGTACACCTTTTTGCTACTCGTAATTACTACTACTAGTGGC
TACAAATGA
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Coding sequence (CDS) from alignment at KK037253.1:240234..240992-

>rna9425 ID=rna9425|Name=rna9425|organism=Nannochloropsis gaditana|type=CDS|length=1836bp|location=Sequence derived from alignment at KK037253.1:240234..240992- (Nannochloropsis gaditana)
TTATAGTAGGTAGAGAGCAATTTCAGCAGAATCCGAACAGCGAACAAGGA
GCAGGTCTTGAGTACACCTTTTTGCTACTCGTAATTACTACTACTAGTGG
CTACAAATGACTGCTCGGAGCAATTACAGCACCAACATTGGAAAAGTGCA
CGCTTAGAATATAAAAGAAAGTATTTACAGGAAAAAATACCAGCACCAAA
CTTGGAGAAATACACAAAAACTAAGTTCTGGTACCTACAGGGAATTCTTG
CACCCGCTTGCCCTTGCTCCGTCATTGGGTCGATTTTTACATTCTGACAC
ACAAAAAAAAGTCACTTATGCTTTTGCAAGACATTTACCCGCAAGTCAGT
CTGGTAGAAAGAATGACTTCCAGAGGCCGATGAAGCCCTCCCACCGGGTG
TCCCTGGACGGTGTTGGCCCCGTGGCGTCAGCCGACAGGACTTCGTGTTC
TATCAATTGTTATAGTAGGTAGAGAGCAATTTCAGCAGAATCCGAACAGC
GAACAAGGAGCAGGTCTTGAGTACACCTTTTTGCTACTCGTAATTACTAC
TACTAGTGGCTACAAATGACTGCTCGGAGCAATTACAGCACCAACATTGG
AAAAGTGCACGCTTAGAATATAAAAGAAAGTATTTACAGGAAAAAATACC
AGCACCAAACTTGGAGAAATACACAAAAACTAAGTTCTGGTACCTACAGG
GAATTCTTGCACCCGCTTGCCCTTGCTCCGTCATTGGGTCGATTTTTACA
TTCTGACACACAAAAAAAAGTCACTTATGCTTTTGCAAGACATTTACCCG
CAAGTCAGTCTGGTAGAAAGAATGACTTCCAGAGGCCGATGAAGCCCTCC
CACCGGGTGTCCCTGGACGGTGTTGGCCCCGTGGCGTCAGCCGACAGGAC
TTCGTGTTCTATCAATTGTTATAGTAGGTAGAGAGCAATTTCAGCAGAAT
CCGAACAGCGAACAAGGAGCAGGTCTTGAGTACACCTTTTTGCTACTCGT
AATTACTACTACTAGTGGCTACAAATGACTGCTCGGAGCAATTACAGCAC
CAACATTGGAAAAGTGCACGCTTAGAATATAAAAGAAAGTATTTACAGGA
AAAAATACCAGCACCAAACTTGGAGAAATACACAAAAACTAAGTTCTGGT
ACCTACAGGGAATTCTTGCACCCGCTTGCCCTTGCTCCGTCATTGGGTCG
ATTTTTACATTCTGACACACAAAAAAAAGTCACTTATGCTTTTGCAAGAC
ATTTACCCGCAAGTCAGTCTGGTAGAAAGAATGACTTCCAGAGGCCGATG
AAGCCCTCCCACCGGGTGTCCCTGGACGGTGTTGGCCCCGTGGCGTCAGC
CGACAGGACTTCGTGTTCTATCAATTGTTATAGTAGGTAGAGAGCAATTT
CAGCAGAATCCGAACAGCGAACAAGGAGCAGGTCTTGAGTACACCTTTTT
GCTACTCGTAATTACTACTACTAGTGGCTACAAATGACTGCTCGGAGCAA
TTACAGCACCAACATTGGAAAAGTGCACGCTTAGAATATAAAAGAAAGTA
TTTACAGGAAAAAATACCAGCACCAAACTTGGAGAAATACACAAAAACTA
AGTTCTGGTACCTACAGGGAATTCTTGCACCCGCTTGCCCTTGCTCCGTC
ATTGGGTCGATTTTTACATTCTGACACACAAAAAAAAGTCACTTATGCTT
TTGCAAGACATTTACCCGCAAGTCAGTCTGGTAGAAAGAATGACTTCCAG
AGGCCGATGAAGCCCTCCCACCGGGTGTCCCTGGACGGTGTTGGCCCCGT
GGCGTCAGCCGACAGGACTTCGTGTTCTATCAATTG
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Synonyms
Publications