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Properties
| Property Name | Value |
|---|
| Product | protein phosphatase 1g |
| Orig transcript id | gnl|cribi|Naga_100608g2.5759.mrna |
| Orig protein id | gnl|cribi|Naga_100608g2.5759 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037253.1 | supercontig | KK037253.1:231708..235329 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9421 ID=rna9421|Name=rna9421|organism=Nannochloropsis gaditana|type=mRNA|length=318bp
ATGTGCCTTATGGGGCAGGAAGGAAGGGAGACGGAGGAGGGAGGGAGGGA
GGAGGAGGGAGGAGAGGGTGGAGGACCTTCTCGAGAAGGGAACAGGTTGG
GTGGGGACGGGGGGGAAGCCAAGGAGGAGGGATCCGTGAGCGCAAAAGGT
GGCGGAGGAGGCAAGGCAGGATCAGAAAGCGATCAGGAAGGAAACGTCGC
TTTGCAAGTGACGAGAGTTGACTGTAGTCTAGGAGCCGTGCCGGGCCTGG
GGAGGGAAGATGTTTACACGCTCAAATTTGCAGCTTTGCAATACATTGAG
CTTTTCAAATTGGTCTAA back to topprotein sequence of rna9421 >rna9421-protein ID=rna9421-protein|Name=rna9421|organism=Nannochloropsis gaditana|type=polypeptide|length=658bp
MSCCSSNLMSGQAWVAPGESLQLYEAVAFASCSCASPRLPCSLISSPRYL
TPMFPYSGENPRPNGLRFGVTAMQGWRVKMEDAHLARVCLEEEEEEEEEG
QVDGNGREEKGERVMKEGEKERKGPTALFGVFDGHGGSEVANYCAKHMEH
VLVTSQAWKGGKREEGKGGRDIQGALKEAFLRLDGMLAGKEGQEELQEML
REEREGGKRPEPEVSLEEVAVQTGLSVGSIRAYVKEAWRRGQAGDEEEGG
EEGGEGGREEEEGEQEGRGGEEEVDEEEEVEEGVVVVEEEEEGGVALSNE
EGMEEQGEEEKRASPAVGAAGRKKRRRGEEGGEVMEAGMCVEECASIGGS
KGGEEVFDLAGGMRSKKRAAEGSSGPPPETAKVANASVTASYGESSTSSS
SSLETAALLKEEEEEEEEEEEEEEEEEEEEEEEEEEGEMMLEEEAIRSIN
FHRMKDLVLRQRPGYDSGCTAVVVVYEEGKEGGRMGGRLVVANAGDSRCV
LSRQGRAVDLSCDHKPENAEEKARIEEAGGSVSEDGRVEGNLNLSRAIGD
LTYKQHAGLPAEKQMISADPDVRVESVRRGEDEFFVLACDGIWNVLSSQE
VVDMVRKGLREGGEEGRLSAVCEAVCDRCCDKEMGGDSDGVGCDNMTMMV
VLLPGWKG back to topmRNA from alignment at KK037253.1:231708..235329+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9421 ID=rna9421|Name=rna9421|organism=Nannochloropsis gaditana|type=mRNA|length=3622bp|location=Sequence derived from alignment at KK037253.1:231708..235329+ (Nannochloropsis gaditana)
CGCAATCATTCTTAATTTGCGTGCCCGCACGTAGCATTCAACTATGTCCC
GGGCATGAGATTGCTCCGACAGGCCATTTGTCACATTATTCTTGCAGCGG
CCCCCAAAGGAGACACCGCGGCCGACGGTCACTTTATTTTTGGTTTTTAA
TTTCATCTTCAAGTCCGAACTTGAAGCCAGCCTCAAGAGTCACCGATTGA
TTTTGAAGACGTTGCCGCACGCACAAAGGCAATTTGGACGGCGGAAACCT
CCGGACACGTTCAACCTGCACATAGGTAGTGTGCCGATGCAATTTAATCA
TCATATTTACCATGTGTTTTGTGCAGTGCCGGCTTTCGGCATGGATTTTA
GtgggtggcggagatggcTTGGCTGGCCTCTGTTGAAAGGAGCGGAAACc
aaggcaaaggaagagaagccTTGTCCCGGCCAGGATGACTGGCAGACATA
TCCCTTTTTCATCCCACGCTCACCGTGTTGCCTGGACGAATATGCTACAT
GCGCATGTGTGTGTGCGGCGGTGCGTCATGGAGTCTTTGTGGTAAAACGT
GCCTCTCATTCCGGCACCCATGGCAATCGCATGGACGTGCTAGGGGGGCG
CGGTGACGTTGACTTGTATGCTTCTAGACATCCTGGTAATAGTTTTTTTA
ACCACAGTCATAATTaactctctcctttctcatttTGGATCGATTTCAAG
GCTCCGTGCGCAGGCATTTGCATATTCAGACCTGCAACGGATGACATAAT
AAGCAGCTGGAGGACATTGGAACCGAGCGAAACGGCTTAATTTACGCATC
AAAAACAACTTCTTCGCACAAAAGCGGTGATCAAAGGTGACATTCTTCTG
GACATAGCATCAAGACTTGCGTCGCGCGCTTGGATTGAATGGGTGCTTAT
CTTTCGGCGCCCGTGACGGAAAAAGAGTCTCAAGACGGTgcgtgctcttc
ctcccagcccacGCAccattctctccctttctttgaTAACCTGGCTCGTT
CCGTGGAGAGAGTGTACCTCTCATGTCGTGTTGTTCTTCAAACCTTATGT
CGGGGCAAGCTTGGGTTGCACCGGGCGAAAGCCTGCAGCTTTATGAGGCA
GTAGCTTTTGCTAGTTGCTCGTGCGCGTCCCCTCGTTTACCATGCTCTCT
catttcttccccccgctaCTTGACACCAATGTTTCCGTACTCAGGGGAGA
ATCCGCGTCCCAATGGCTTGCGTTTCGGGGTTACGGCCATGCAAGGATGG
CGGGTGAAGATGGAAGATGCCCACCTGGCTCGAGTttgcctggaggagga
ggaggaagaggaggaggaggggcaagtggacgggaatgggagggaagaga
aaggggagcgggtgatgaaggagggggagaaggagaggaaaggcccGACG
GCCCTGTTTGGGGTCTTCGACGGGCATGGGGGGTCGGAGGTGGCGAATTA
TTGCGCGAAGCACATGGAGCACGTCTTAGTCACGTCCCAggcgtggaaag
gagggaagcgggaggaagggaagggagggagggacatcCAAGGGGCTTTG
AAGGAGGCTTTTTTACGGCTGGACGGCAtgctggcggggaaggaagggca
ggaggagctgcaggagatgttgcgggaggagcgggaaggggggaagaggc
cggaGCCGGAGGTGAGCCTAGAGGAGGTAGCGGTACAGACGGGATTGTCG
GTGGGGTCCATCCGGGCCTACGTCAaggaagcgtggaggaggggacaggc
gggggacgaagaggagggcggggaggaggggggggagggggggagggagg
aggaagaaggggagcaggaaggccggggcggggaggaggaggtagacgag
gaggaggaggtcgaagaaGGGGTGGTTGTagtcgaagaggaggaagaagg
gggggtggCCCTATCgaatgaggaggggatggaggagcagggagaggaag
agaagcgGGCATCGCccgcggtgggggcggcagggaggaaaaagcgtcgg
aggggggaagaaggaggggaagtcATGGAAGCAGGGATGTGTGTGGAGGA
ATGTGCGTCGATCGGGGGtagcaaggggggagaggaggtatTTGACCTGG
ctggagggatgaggagtaAGAAGCGAGCGGCAGAGGGGTcctcaggccct
ccccctgagACAGCCAAAGTGGCGAACGCCTCCGTCACGGCCTCATACGG
CGAAAGTAGCACgagtagcagcagcagtttAGAGACGGCGGCCCtgctga
aagaggaggaggaagaagaggaagaggaggaggaggaggaggaagaagag
gaagaggaggaggaggaggaggaggaggaaggggagatgatgctggagga
ggaagcgatccGCAGCATTAACTTTCACCGGATGAAAGATTTGGTACTTC
GACAACGTCCAGGTTATGATTCGGGCTGCAcggccgtggtggtggtctac
gaggaagggaaggagggcgggaggatgggcggGCGGTTGGTGGTGGCCAA
CGCGGGGGATTCCCGGTGCGTGTTGAGTCGCCAGGGGAGAGCCGTGGACC
TGTCTTGCGACCACAAGCCGGAAAATGCCGAGGAAAAGGCACGCAtcgaa
gaggcggggggaagcgtGTCGGAAGACGGgcgggtggaagggaatTTGAA
TTTGTCCCGGGCCATTGGGGACTTGACCTACAAACAACATGCaggcctcc
ccgccgagAAGCAAATGATCAGCGccgacccggatgtacgGGTTGAAAGC
GTgcgcaggggggaggacgaattTTTCGTGCTGGCATGCGATGGTATTTG
GAATGTGTTGAGCAgtcaggaggtggtggacatgGTGCGGAAGGGCCtcc
gggaaggcggggaagaggggcgacTCTCCGCCGTATGCGAGGCGGTTTGC
GACCGGTGTTGCGAcaaggagatgggcggggACAGCGACGGCGTGGGCTG
CGACAACATGACTATGATGGTGGTCTTGTTGCccgggtggaaggggtgaa
gggaagggaggagagggaggaggagaaggaagcggggtGGTGACGAGGTA
ATCAGCCGCTGGGCGGGCACGAAGTGGGCCAAAAGGGGCGCCGTGactga
ggggggaggagtgctgggatggggaagaaggatgggaTGGGAAGGCGGAG
TGAAGGCAGGTCGGgcgaaagaaaaagacgggGACGAGACGTGCAGGCGC
TGGGGGGGCATGCCGAAATTGAGGGGAGAGACCGTCTTGGGTTGGATATG
AATGCCTGAATACAGGAAAAAGCATGGTGAAAAATGCTCTGACAATGTTT
GTATGATAAATAAATTGGACAAGACGGAGGCTTGATCGTACGAGTAGTTC
GTGTACGCCATGTGTAAAGGCCCGGGGAGCATGGGTCCGTGATGAAAAGT
CTTGGAATGGACAGAAAAGCAAACGCAAGAGAAAAATATGGACTGTGTAC
CGGCATTCCCATAAAAGAATATATGAATGGACAGGAAAGCAAACGCAACA
GAAAGATATGGACTGTATCCCTGATTCCCAAGTCAGAATGTACCCACAGT
CCTCCTTTCAAGTTGTATTGGGTAGCTGTGATGCGCCTTTGCCATCCACT
CGTTGAAATACAGATTATTTCC back to topCoding sequence (CDS) from alignment at KK037253.1:231708..235329+ >rna9421 ID=rna9421|Name=rna9421|organism=Nannochloropsis gaditana|type=CDS|length=1977bp|location=Sequence derived from alignment at KK037253.1:231708..235329+ (Nannochloropsis gaditana)
ATGTCGTGTTGTTCTTCAAACCTTATGTCGGGGCAAGCTTGGGTTGCACC
GGGCGAAAGCCTGCAGCTTTATGAGGCAGTAGCTTTTGCTAGTTGCTCGT
GCGCGTCCCCTCGTTTACCATGCTCTCTcatttcttccccccgctaCTTG
ACACCAATGTTTCCGTACTCAGGGGAGAATCCGCGTCCCAATGGCTTGCG
TTTCGGGGTTACGGCCATGCAAGGATGGCGGGTGAAGATGGAAGATGCCC
ACCTGGCTCGAGTttgcctggaggaggaggaggaagaggaggaggagggg
caagtggacgggaatgggagggaagagaaaggggagcgggtgatgaagga
gggggagaaggagaggaaaggcccGACGGCCCTGTTTGGGGTCTTCGACG
GGCATGGGGGGTCGGAGGTGGCGAATTATTGCGCGAAGCACATGGAGCAC
GTCTTAGTCACGTCCCAggcgtggaaaggagggaagcgggaggaagggaa
gggagggagggacatcCAAGGGGCTTTGAAGGAGGCTTTTTTACGGCTGG
ACGGCAtgctggcggggaaggaagggcaggaggagctgcaggagatgttg
cgggaggagcgggaaggggggaagaggccggaGCCGGAGGTGAGCCTAGA
GGAGGTAGCGGTACAGACGGGATTGTCGGTGGGGTCCATCCGGGCCTACG
TCAaggaagcgtggaggaggggacaggcgggggacgaagaggagggcggg
gaggaggggggggagggggggagggaggaggaagaaggggagcaggaagg
ccggggcggggaggaggaggtagacgaggaggaggaggtcgaagaaGGGG
TGGTTGTagtcgaagaggaggaagaagggggggtggCCCTATCgaatgag
gaggggatggaggagcagggagaggaagagaagcgGGCATCGCccgcggt
gggggcggcagggaggaaaaagcgtcggaggggggaagaaggaggggaag
tcATGGAAGCAGGGATGTGTGTGGAGGAATGTGCGTCGATCGGGGGtagc
aaggggggagaggaggtatTTGACCTGGctggagggatgaggagtaAGAA
GCGAGCGGCAGAGGGGTcctcaggccctccccctgagACAGCCAAAGTGG
CGAACGCCTCCGTCACGGCCTCATACGGCGAAAGTAGCACgagtagcagc
agcagtttAGAGACGGCGGCCCtgctgaaagaggaggaggaagaagagga
agaggaggaggaggaggaggaagaagaggaagaggaggaggaggaggagg
aggaggaaggggagatgatgctggaggaggaagcgatccGCAGCATTAAC
TTTCACCGGATGAAAGATTTGGTACTTCGACAACGTCCAGGTTATGATTC
GGGCTGCAcggccgtggtggtggtctacgaggaagggaaggagggcggga
ggatgggcggGCGGTTGGTGGTGGCCAACGCGGGGGATTCCCGGTGCGTG
TTGAGTCGCCAGGGGAGAGCCGTGGACCTGTCTTGCGACCACAAGCCGGA
AAATGCCGAGGAAAAGGCACGCAtcgaagaggcggggggaagcgtGTCGG
AAGACGGgcgggtggaagggaatTTGAATTTGTCCCGGGCCATTGGGGAC
TTGACCTACAAACAACATGCaggcctccccgccgagAAGCAAATGATCAG
CGccgacccggatgtacgGGTTGAAAGCGTgcgcaggggggaggacgaat
tTTTCGTGCTGGCATGCGATGGTATTTGGAATGTGTTGAGCAgtcaggag
gtggtggacatgGTGCGGAAGGGCCtccgggaaggcggggaagaggggcg
acTCTCCGCCGTATGCGAGGCGGTTTGCGACCGGTGTTGCGAcaaggaga
tgggcggggACAGCGACGGCGTGGGCTGCGACAACATGACTATGATGGTG
GTCTTGTTGCccgggtggaaggggtga back to top
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