rna9420, rna9420 (mRNA) Nannochloropsis gaditana

Overview
Namerna9420
Unique Namerna9420
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2052
Alignment locationKK037253.1:231046..231363 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100608g1.5757.mrna
Orig protein idgnl|cribi|Naga_100608g1.5757
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:231046..231363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100608g1gene9142Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9420rna9420-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21281.1cds9390Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9420 ID=rna9420|Name=rna9420|organism=Nannochloropsis gaditana|type=mRNA|length=2052bp
TCTTGCATTGAGGGGCCTCCATCTCGTAGGAGGGATTGCAGCCTGCTGTT
CTATAAGGAGGACAGGAAACAGGGGGTACCTCTCCCGATCGAATCCTTGG
CCCAGAAGCAAGCTTTGTGTATGCCATTATCTCCCTCCCACGGCTCCGCA
ACCTACTTCATCTCAACGCCCACGAGCACGTCCTTGCAGGGAGGAAGGAC
AGGGAGAAGACGGGCCAAGGATAGCTTGTCACGCATTCAAAGGCGAGCAA
GACCGTCACCAGATTTGCATGAAGCAGTAGTACAACTCTCTTAATTCTTC
GCGAGGATCAATATGCTGTGAAGACACCCCCTCTCCATGACCTCCGTCAC
CCTCCCCCTTTCGTCCCCTCCTCGTTCCCCCCCTCCCTCCTCCACGCCCC
TCGCCCTCACCTACCGCACGCTGCGCCCCGAGGACCTGGCTGAGGTCAAG
GATTTACACGAGGAACTCTTTCCTGTCCGGTACTCAGACGCCTTCTACGA
CTGCGCGGTCCGTGGCTACTTGGTCGGGACTTGTCAGCCCCTGTTCACCC
TGGCTGCCGTGGAGGTGCTGCCGGAGGAGGGGGAGGAAAGGAGGGAAAGG
CAGGGCGGAAGGAAGATGCTGCAGAGTATCGAGGAGGAGCGAAATGGTGT
GATCCAGGGAGACGCAGGCAAGCGCCTTCTACTTCGGTCCCGGGGCCTCG
CGCCCCCTCCGTCCTTTCCCTCCTGCTTCAACTCTACCGGCCCATCCCCT
CCTCTTTCCCCCCCTCCTTCCTCATCACGAGAAGGCCGACTGCTCGGCAT
CATCCTCGCCCAGCTTCTCCCCTTCTCCGAGTGTGCGCCGGACGACGCCG
ACCTTCTCCTGCCTGCGCCCAGACTCGCCCATTCCCTCCTTCCCCCCCTA
CCTACCTGCCCCCTTCCCTCCCCATCCACCCATGCCCTCTACATCCTCAC
GCTTGGGACCCGCCCGGACGCGCGCCGTCAGGGCCTGGCCCGATCCCTCC
TCCTTCGCACGCTCTCCCAGGCCTCCCTCCCTCCCTCTCCCCCTCCTTCC
CCTCCTTCCACCCCTCCCTCCCTGCCTGCCCCCCACCTCGGCCTCGTCTA
CCTGCACGTCCTACCCCGCAATCAGTCCGCCATCGCCTTTTATGTCCAGC
AGGGCTTTCAATGTCGAGGTCGATTGCCCCGCTACTATGTGATCAACGGG
AAGGAGGAGGACGCCTATCTGTACGTGAGGTATGCAGGGCAGGGGGGGGG
GGAGGGGGGGCGGAAGACGGGGGCGATGGGCTGGGAAGAAGTGGGAGGTT
CAGGAGGAGGGTGGGGGGAGAGGAGGTGGCTGGGATGGGTGAGGAGCTGG
GAGGGGTGGGGTGAGAGAGTGTGGTCATGGGCGTCGTTGTTGGTGGGGTG
GGTGAAGGGAGGGGGAAAGGGAGGGAGGGAGGGAGCGAGGGAGGAGACAG
AGGGGCCGCGAGGGCCTTGCATGCTGGAGGAAGGGAGGGAGGGAGGAAGG
GAGGGAGGGGAGGAAGGGCGGACGTCTGGCGGTGTGAGTTCCGAAAACGG
GGCATGTCGTGTCTCCACAAAGTGTGTAGGGTGTACATGGGAGGTGGCCG
GTGATCGCCCACCCCGGTTAGGGTCAAGGGATGTAAACATTGAAGGGCAC
GGAACGAGCCTCGGCCAAGTAGTATCGTTGAGAACAAGGGATCCTCACGG
CCCCGTATATGTCCGACCTCCTCTTGCCACCCTTCATGCCGGTCCGGCAC
GGCCGGCCCGTCACGCTTTTCTTTCCCTTCTTTCCGGTGTCGTTGCCTCT
TTTTCCCCCCCGCCTTCCGTCCTACCCTCCCTCCCGCCCTCCCCGAGCCC
TACGGCCCGTCCCCCCCCACCTCCAATCCTTGCACTACTTGCTGGGCACA
GGCCTCGTACATGTCCACTAAGCTCCGGCACGACAACGCCGCTCCCTGGT
TCCCGCCCTCCCTCTTTTTTTCTCGGTAGCAAGCCACCATCTCCGCGGCT
TCCTCTTCGCATGCTACGGGTCGGGCCGGAGGGACGAATTTCCGGGCTTT
GA
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protein sequence of rna9420

>rna9420-protein ID=rna9420-protein|Name=rna9420|organism=Nannochloropsis gaditana|type=polypeptide|length=105bp
MCLMGQEGRETEEGGREEEGGEGGGPSREGNRLGGDGGEAKEEGSVSAKG
GGGGKAGSESDQEGNVALQVTRVDCSLGAVPGLGREDVYTLKFAALQYIE
LFKLV
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mRNA from alignment at KK037253.1:231046..231363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9420 ID=rna9420|Name=rna9420|organism=Nannochloropsis gaditana|type=mRNA|length=318bp|location=Sequence derived from alignment at KK037253.1:231046..231363+ (Nannochloropsis gaditana)
ATGTGCCTtatggggcaggaaggaagggagacggaggagggagggaggga
ggaggagggaggagagggtggaggacctTCTCGAGAAGGGAACAGGTTgg
gtggggacgggggggaagccaaggaggagggatccGTGAGCGCAaaaggt
ggcggaggaggcaaggcaggATCAGAAAGCGATCAGGAAGGAAACGTCGC
TTTGCAAGTGACGAGAGTTGACTGTAGTCTAGGAGCCGTGccgggcctgg
ggagggaagatgttTACACGCTCAAATTTGCAGCTTTGCAATACATTGAG
CTTTTCAAATTGGTCTAA
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Coding sequence (CDS) from alignment at KK037253.1:231046..231363+

>rna9420 ID=rna9420|Name=rna9420|organism=Nannochloropsis gaditana|type=CDS|length=318bp|location=Sequence derived from alignment at KK037253.1:231046..231363+ (Nannochloropsis gaditana)
ATGTGCCTtatggggcaggaaggaagggagacggaggagggagggaggga
ggaggagggaggagagggtggaggacctTCTCGAGAAGGGAACAGGTTgg
gtggggacgggggggaagccaaggaggagggatccGTGAGCGCAaaaggt
ggcggaggaggcaaggcaggATCAGAAAGCGATCAGGAAGGAAACGTCGC
TTTGCAAGTGACGAGAGTTGACTGTAGTCTAGGAGCCGTGccgggcctgg
ggagggaagatgttTACACGCTCAAATTTGCAGCTTTGCAATACATTGAG
CTTTTCAAATTGGTCTAA
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Synonyms
Publications