rna9413, rna9413 (mRNA) Nannochloropsis gaditana

Overview
Namerna9413
Unique Namerna9413
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1332
Alignment locationKK037253.1:209480..210195 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101088g2.7164.mrna
Orig protein idgnl|cribi|Naga_101088g2.7164
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:209480..210195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101088g2gene9134Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9413rna9413-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21291.1cds9383Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9413 ID=rna9413|Name=rna9413|organism=Nannochloropsis gaditana|type=mRNA|length=1332bp
GGCTTTTGATCAACTAAGAGCAAGACTTAGGGAGAGAACGGCATCGTATC
GTTCCTTTTCGTGCAAATTGTCATCAATCTACCCCTCCGTACTCTCCATA
GGGAAAAGACGCCGCCACAGGACGGATCAAATAATCTGTATACCACAGGC
ATATGACCACAGAGGACGATGTCCCCGCCCCATTCACGGTAAAGTTGTCA
GCATTGCGCATTCGAGCCCTGGATGCAGTACTGCCTACAGGGCCTTCCGC
TCATTTCTACCTCTTTGCCCTCCCCTCCCCTCCCACCTTCCTGCGGCAGT
GCTCCTGCCCCACCGGACTTAAGCTTTTCCTTCCGAATTCTTTTCTCCCT
TTCCCTTCCCCCTACAGCCCCTTAACTCCGTCCGCGCGTCCACCGCCCGG
GTCGTGCGCCGAGCCCAGCACGTGCACATCGACTCAGCCGCCCTCGCTGC
CCTCACCCGCAGCCTGACCACGCGCGAAACCCAACCACTGGCGTGGCAAG
AGCTTGGATGGCACTACCACGCCGACGCCGAGACGGCCGGGCCGTTGACC
TGCCAATACGTCCTTGTCTTGGACGCCCTGAATTTTTGCTTCTGGCCGAC
CGCGGGCCTCGAGTACGAACACTTGGCCCGTGGCTTGAGGCGGGCGTTGG
AACGGGACCCAAACGCCTTCAACGCCCAGGCCTTGGCCTCGGTCGCCCCC
GCCACTGTCGCGGGCTGGGTGGATTTCCCTCCCCCTCCCTCGCCTTCCCC
TTCCTCCACCGGCCCGGGACCGGCGACCGGACCCCGGAGTACCTCCCCTC
CTTCCTCCCCCGCTTCCTCGCCCCCTTCTTCCTTCCTTCCCTGCCTCTCG
GAACGCGTCCGGAAAGTCCGGGAAGTGGGGCACGTCCTCCTTCAACACTT
CAACGGCCAGGCCGCGGACCTGGTCCGGGCCTCGGGGTTTTCCGCGGTGG
AACTCGTCCGTCTCCTCTCGGCCTTTTTCCCTTCCTTCCGGGACGAAGCC
CTCCACCAGGGCGAGCAGGTCTACTTCTACAAGCGGGCGCAGATCCTGGT
GGCGGACATATGGGCCGCCTACGGCTGTCGGACGGATCCTCCTTTCCCGT
ATGCCTTCAGGGACATGGGCGAGCTGACCATGTTCGCGGACTACCGGGTG
CCGCAGGTGAGGGGGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGA
AGAAGGGAGGAAGGAAGGAAGGAAGGGAGGAAGGGAGGGAGGGAGGGTTC
CACAGCTTTTCCCGCGAGGGTACTGGTCGGGCCGATGCTCAATTCCCCCC
CGCCTTCCTGTCCTCTTTCCCATGAAATTTAA
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protein sequence of rna9413

>rna9413-protein ID=rna9413-protein|Name=rna9413|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MTIFPSQCRFWFFLNSRPSSPVMFSVLELALARAMGGILKASITAFSFLF
LSFLLPFLLLVLLTSLGRARLPPRRPPHPPRYPRAKGSLSQKATPPSTCN
RAKQIQNLSPLRECWGRRCTTLSVWESMMTLVRRRKPQPSISCCLSSRIK
EGRR
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mRNA from alignment at KK037253.1:209480..210195+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9413 ID=rna9413|Name=rna9413|organism=Nannochloropsis gaditana|type=mRNA|length=716bp|location=Sequence derived from alignment at KK037253.1:209480..210195+ (Nannochloropsis gaditana)
CGTGCAGGATAATTACCTCCTCTCTACCAGCCCTCCGCCATATATCATCC
AAGCTCGCGCATGTTATAATTGTTCCCGTCTTGCTGACATGTAATGGAAG
GCTAATATGTAAGTCAGGATGACAATTTTTCCTTCGCAGTGTCGTTTTTG
gttttttttaaattccAGACCTTCCTCACCGGTCATGTTTTCCGTCTTAG
AGCTAGCTCTGGCACGAGCCATGGGAGGAATCCTGAAAGCATCTATTact
gccttttccttcctttttctgtccttcctcctgcccttcctcctgcttgt
cCTTCTCACATCCCTCGGCcgtgcccgccttcctccacgtcgtcctcctc
accctcctcgatACCCGCGGGCGAAAGGAAGCCTTTCCCAGAAGGCCACA
CCGCCCTCGACGTGCAATCGGGCCAAGCAAATTCAGAATTTATCACCGCT
TCGGGAATGTTGGGGGCGACGCTGTACCACGCTGTCCGTCTGGGAATCTA
TGATGACGTTGGTCCGCCGGAGAAAGCCACAGCCTAGTATCAGCTGTTGT
TTGAGTTCGCGCAttaaagagggaaggagatgaggaaAGAGCGAGGCAAA
GTGAAGCGGGGTGAGAGGGACGAAAGGGGGAAGTCAATGCCATgtaaaag
gaggaggaccataCGCAAAAGGAAAGACTAAGAGAAAAGATCGGGAAACA
GCCCCCTATGCCTTGC
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Coding sequence (CDS) from alignment at KK037253.1:209480..210195+

>rna9413 ID=rna9413|Name=rna9413|organism=Nannochloropsis gaditana|type=CDS|length=465bp|location=Sequence derived from alignment at KK037253.1:209480..210195+ (Nannochloropsis gaditana)
ATGACAATTTTTCCTTCGCAGTGTCGTTTTTGgttttttttaaattccAG
ACCTTCCTCACCGGTCATGTTTTCCGTCTTAGAGCTAGCTCTGGCACGAG
CCATGGGAGGAATCCTGAAAGCATCTATTactgccttttccttccttttt
ctgtccttcctcctgcccttcctcctgcttgtcCTTCTCACATCCCTCGG
CcgtgcccgccttcctccacgtcgtcctcctcaccctcctcgatACCCGC
GGGCGAAAGGAAGCCTTTCCCAGAAGGCCACACCGCCCTCGACGTGCAAT
CGGGCCAAGCAAATTCAGAATTTATCACCGCTTCGGGAATGTTGGGGGCG
ACGCTGTACCACGCTGTCCGTCTGGGAATCTATGATGACGTTGGTCCGCC
GGAGAAAGCCACAGCCTAGTATCAGCTGTTGTTTGAGTTCGCGCAttaaa
gagggaaggagatga
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Synonyms
Publications